Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Reverse (-)

71800830 .. 71808681

Gene Structure 7852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0528900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGGGTATGGGTGTGATGGGTTGCTGCACTTTCTCGTCGGACGACATTGTAATAAAGTCTCCTAATGATAAACGACTCTACAGAGTGATTAAGCTTGAGAATGGCCTTACTGCATTGCTCATTCACGATCCTCAGGTTTACCCACAAGGACCACCCCACCACTCCTCCGACCTTGAACAACAACAACAAGATAGTGAAGCTGTAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGATAGTGAAGCTGTAGAAGAAGAAAAGGAAGAGGAAGGTGAAGTTAAAAGGAAGGAAGAGGGAGGTGCTTCTGAGACTAAGAAGGCAGCAGCAGCAATGTGTGTCGGAATAGGCAGCTTCTCTGACCCTCTCGAGGCTCAGGGGCTTGCACATTTTCTAGAACACATGCTGTTCATGGGGAGTACAAAGTTCCCAGATGAAAATGAGTATGCTAGTTACTTGTCCAAGCATGGAGGGTCGTCAAATGCATATACAGGAGCAGAACATACTTGCTACTACTTTAATGTGAAACAAGAATTTCTTAAGGGTGCCTTGAAAAGATTTTCTCAGTTCTTTGTTTCACCTCTAATGAAAAGTGAAGCCATGGAGAGAGAGGTACAGGCTATAGATTCAGAGTTTAAAACGGTTCTGCAAAACGATTTCTGCCGCCTTCGACAACTTCAGGGCCATACATCCTCACCTGGTCACCCATTTAATAAATTCTCTTGGGGAAATAAGAAGAGCTTGGATGATGCAAAGGAAAAAGGGATCAACTTGCAGGAACGAATACTAAAATTGTACAGAGACTATTACCACGGTGGATTAATGAAGCTAGTTGTCATTGGTGGAGAATCTCTTGATGTACTTGAGCACTGGGTTTTGGAATTGTTTGGAGATGTCAAAAAAGGTCCCCAAGTAAATCTGGAGTTCAAGGCAGAAGGTCCTATTTGGAAAGCTGGAAAACTTTACAGGCTAGAGGCTGTTGACGATGTTCATATACTCCACCTAGCATGGACACTTCCATGTCTTCAAGAACACTATTTGAAGAAACCAGAAGATTACTTGAGTCATCTGCTTGGGCATGAGGGCAGGGGAAGTTTGCATTTCTACCTGAAAGCTAGAGGGTGGGTAACATCTTTAGATACTTGTTTGAGCGGGATGGACTGCTCTTCTGTGGCTTATATCTTTTGCATGGTCATATACCTCACTGACTCTGGATTGGAGAAGATTTTTGAAATAATTGGGTTCGTGTATCAATACATTGAGTTATTGCGTCAAATGTCGCCACAAGAATGGATATTTCGGGAACTTCAGGATATTGGGAACATGGACTTTAGATTTGCAGAGGAGCAGGATCAGGATGATTATGCTTCACAACTTGCAGAAAATTTACTATATTATGCAACAGAGCATGTTATTTATGGGGACTATGTGAACGAGAGTTGGGACAAGGAATTGATAGAATATGTTCTTGGTTTCTTCAGACCAGAAAACATGAGGATTGATGTGATATCAAAGTCCTTGTTTAAGTCGGAAGATTTCCAGTGTGAGCCTTGGTTTGGATCACATTATATTGAGGAAGATATGTCTCCATCTTTAATAAATTTATGGAAGAATCCTCAAGAAATTAGTGTTTCATTGCATCTGCCGGCAAAGAATGATTTCATTCCTCGTGATTTCTCCATCCGTTCTGATGTTTTGTGCATTGATACTTCAACGACATCTTGTCCGAGATGTATACTTGATGAACCATTGATGAAGTTTTGGTACAAGCTCGACAGTACATTTAAACTTCCACATGTAAATACATACTTCCTCATCAATCTGAAGGGTGCATGTGATGATGTGAAGAGTTGTGTTTTGACTAGCTTATACCTTGACCTTCTCACAGATCAGCTGAATGAGATCCTGTATGAGGCCTGTGTTGCCAGCCTGGGAACTTCTTTTTCTCTGTCTCTGGACAAACTGCAGTTAGAGGTATACGGTTTCAATGATAAGCTTCCAGCTCTGTTGTCAAACATTTTGGAAACAGTAAAAAGTTTCTTGCCAACTGATGATCGTTTTGAGGTTTTTAAAGAAGACATGGAGCGAGCATATACGAACACCAATATGGATCCTTGGAGTTACTCAACATACTTGAGAGATCAAGTTCTGTTGAAGAAATTCTATACCGTAGATGAGCAGTTGCAAGTTTTGAAGGGATTGTCTGTTTCTGATCTGAAGTCTTTCATTCCTGATATTTTTTCCCAGCTATACATTGAGGGCCTTTTGCATGGCAACTTGTCAGAAGAAGAAGCTATTAGTCTTGCAAAATTATTTCAAACAAATTTTACTGTACCGCCACTTCCTAGCGAGTTGGTGTATAGAGACAATTGTATCTGTCTTCCTCCAAATGCTAACCTCATTAGAGATGCTACTGTGAAGAACAAGTCAGAAACAAACTCTGTGACTGAGCTGTATTTTCAAATTGAGCAGGCAGTGAAGATTGAGTCCATCAGACTAAAAGTATTGATTGATCTTTTTCATGAAATTGTACAGGAACCACTTTTTAATCAACTAAGGACAAAGGAGCAGCTTGGGTATGTTGTTCTCTGTGGCCGGAATCATACATGCAATGTTTTTGGCTTCTATTTCTGTGTTCAGTCGTCCGAGTACAACCCGATCCACCTTCAAGGCAGACTGGACAACTTTATCGATGGTCTGGAAGAGTTGTTGGAAGGGCTGGAAGATGATTCCTTTGAGAATTATAAAGGTGGACTAATGGCAAAGATTCTGGAGAAAGATGCATCCCTCACATGTGAAACCAATCGATTGTGGACTCAGATTCTTGCTAAATGGTACAAGTTTGACTATTCGAAAAAGGCTGCAGAACAACTCAGAAGCATTCAGAAGGAGGATGTTACCAAATTTTACAAGACCTATTTGCAACAATCATCTCCAAAGCGTCGAAGACTTGCAACTCGTGTTTGGGGTTGCAACACAGACTTGAAAGAAGCGCGACCGGAGTCTGTGCAAGTCATTGAAGACCTTGCAGCCTTTAAGATGTCGTCCAAGTTTTATGATCGTAAACGATGTGAAAAAGTTACTCCTCTAAATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

1033

Amino Acids

118.97

Weight (kDa)

4.92

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	105 - 232	2.2e-33	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	261 - 438	8.4e-18	Peptidase M16 inactive domain
Peptidase_M16_M	PF16187	445 - 730	1e-83	Middle or third domain of peptidase_M16
Peptidase_M16_C	PF05193	735 - 918	1.1e-16	Peptidase M16 inactive domain
PqqF-like_C_4	PF22456	840 - 939	1.2e-23	PQQ synthase PqqF-like, C-terminal lobe domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2748
AccB1I	GGYRCC	1 cut(s)	548
AccBSI	CCGCTC	1 cut(s)	1155
AccI	GTMKAC	2 cut(s)	1738, 1980
AccII	CGCG	1 cut(s)	2998
AciI	CCGC	3 cut(s)	667, 1155, 2339
AclWI	GGATC	8 cut(s)	122, 776, 1362, 1570, 1900, 2108, 2121, 2656
AcoI	YGGCCR	1 cut(s)	2596
AcsI	RAATTY	7 cut(s)	536, 719, 1387, 1603, 2162, 2326, 2906
AcuI	CTGAAG	5 cut(s)	665, 1295, 1465, 1847, 2240
AfiI	CCNNNNNNNGG	3 cut(s)	373, 1559, 1915
AflII	CTTAAG	1 cut(s)	542
AflIII	ACRYGT	2 cut(s)	1798, 2795
AhdI	GACNNNNNGTC	1 cut(s)	1725
AjnI	CCWGG	2 cut(s)	700, 1932
AjuI	GAANNNNNNNTTGG	2 cut(s)	1455, 1487
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	6 cut(s)	63, 308, 798, 1593, 1959, 2361
AlwI	GGATC	8 cut(s)	122, 776, 1362, 1570, 1900, 2108, 2121, 2656
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	5 cut(s)	103, 685, 1917, 2263, 2596
ApeKI	GCWGC	8 cut(s)	24, 326, 329, 332, 354, 2572, 2864, 3032
ApoI	RAATTY	7 cut(s)	536, 719, 1387, 1603, 2162, 2326, 2906
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
AseI	ATTAAT	1 cut(s)	824
Asp700I	GAANNNNTTC	4 cut(s)	1467, 1661, 2162, 2225
AspLEI	GCGC	1 cut(s)	2998
AspS9I	GGNCC	5 cut(s)	149, 685, 908, 941, 2263
AsuHPI	GGTGA	4 cut(s)	290, 573, 690, 698
AsuII	TTCGAA	1 cut(s)	2855
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	3 cut(s)	149, 908, 941
AxyI	CCTNAGG	1 cut(s)	132
BaeI	ACNNNNGTAYC	2 cut(s)	2359, 2392
BamHI	GGATCC	1 cut(s)	2113
BanI	GGYRCC	1 cut(s)	548
BarI	GAAGNNNNNNTAC	4 cut(s)	1751, 1783, 2328, 2360
BauI	CACGAG	2 cut(s)	1671, 2961
BbsI	GAAGAC	5 cut(s)	1019, 2085, 2375, 2956, 3030
Bbv12I	GWGCWC	1 cut(s)	873
BbvI	GCAGC	8 cut(s)	11, 338, 341, 344, 366, 2584, 2851, 3044
BccI	CCATC	6 cut(s)	10, 1153, 1600, 1691, 2501, 2690
BciT130I	CCWGG	2 cut(s)	702, 1934
BcoDI	GTCTC	6 cut(s)	63, 308, 798, 1593, 1959, 2361
BfaI	CTAG	8 cut(s)	398, 453, 833, 974, 1007, 1119, 1866, 2349
BfmI	CTRYAG	6 cut(s)	79, 201, 252, 624, 1967, 2865
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	9 cut(s)	25, 327, 330, 333, 355, 667, 2573, 2865, 3033
BlsI	GCNGC	9 cut(s)	26, 328, 331, 334, 356, 668, 2574, 2866, 3034
Bme1390I	CCNGG	2 cut(s)	702, 1934
Bme18I	GGWCC	3 cut(s)	149, 908, 941
BmeRI	GACNNNNNGTC	1 cut(s)	1725
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	5 cut(s)	149, 685, 908, 941, 2263
BmiI	GGNNCC	4 cut(s)	550, 910, 2115, 2541
BmrFI	CCNGG	2 cut(s)	702, 1934
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	5 cut(s)	742, 1651, 2401, 2773, 2795
BmuI	ACTGGG	1 cut(s)	883
BoxI	GACNNNNGTC	1 cut(s)	3004
BpiI	GAAGAC	5 cut(s)	1019, 2085, 2375, 2956, 3030
BpmI	CTGGAG	2 cut(s)	944, 2795
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	2855
BpuEI	CTTGAG	5 cut(s)	116, 887, 1084, 1605, 2158
Bsa29I	ATCGAT	2 cut(s)	2694, 2809
BsaJI	CCNNGG	5 cut(s)	603, 814, 1553, 1933, 2117
BsaWI	WCCGGW	1 cut(s)	3001
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 1559, 1915
Bse118I	RCCGGY	1 cut(s)	1648
Bse1I	ACTGG	3 cut(s)	878, 1543, 2685
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	4 cut(s)	113, 342, 1637, 2620
BseBI	CCWGG	2 cut(s)	702, 1934
BseCI	ATCGAT	2 cut(s)	2694, 2809
BseDI	CCNNGG	5 cut(s)	603, 814, 1553, 1933, 2117
BseGI	GGATG	7 cut(s)	692, 754, 1164, 1366, 1683, 2786, 2902
BseLI	CCNNNNNNNGG	3 cut(s)	373, 1559, 1915
BseMI	GCAATG	4 cut(s)	113, 342, 1637, 2620
BseMII	CTCAG	7 cut(s)	146, 303, 392, 581, 2442, 2834, 2890
BseNI	ACTGG	3 cut(s)	878, 1543, 2685
BseRI	GAGGAG	3 cut(s)	154, 1361, 3078
BseXI	GCAGC	8 cut(s)	11, 338, 341, 344, 366, 2584, 2851, 3044
BseYI	CCCAGC	1 cut(s)	2247
BsgI	GTGCAG	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	2998
Bsh1285I	CGRYCG	1 cut(s)	3002
BshFI	GGCC	5 cut(s)	105, 687, 1919, 2265, 2598
BshNI	GGYRCC	1 cut(s)	548
BshVI	ATCGAT	2 cut(s)	2694, 2809
BsiEI	CGRYCG	1 cut(s)	3002
BsiHKAI	GWGCWC	1 cut(s)	873
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	1649, 2599, 3002
BslFI	GGGAC	3 cut(s)	894, 1439, 1460
BslI	CCNNNNNNNGG	3 cut(s)	373, 1559, 1915
BsmAI	GTCTC	6 cut(s)	63, 308, 798, 1593, 1959, 2361
BsmFI	GGGAC	3 cut(s)	894, 1439, 1460
BsmI	GAATGC	1 cut(s)	2883
BsnI	GGCC	5 cut(s)	105, 687, 1919, 2265, 2598
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	2855
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp1407I	TGTACA	2 cut(s)	798, 2533
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	3 cut(s)	667, 1155, 2339
BspANI	GGCC	5 cut(s)	105, 687, 1919, 2265, 2598
BspCNI	CTCAG	7 cut(s)	145, 304, 391, 580, 2443, 2833, 2889
BspDI	ATCGAT	2 cut(s)	2694, 2809
BspFNI	CGCG	1 cut(s)	2998
BspHI	TCATGA	1 cut(s)	2524
BspLI	GGNNCC	4 cut(s)	550, 910, 2115, 2541
BspMAI	CTGCAG	2 cut(s)	1971, 2869
BspPI	GGATC	8 cut(s)	122, 776, 1362, 1570, 1900, 2108, 2121, 2656
BspQI	GCTCTTC	2 cut(s)	734, 1174
BspT104I	TTCGAA	1 cut(s)	2855
BspT107I	GGYRCC	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	542
BsrBI	CCGCTC	1 cut(s)	1155
BsrDI	GCAATG	4 cut(s)	113, 342, 1637, 2620
BsrFI	RCCGGY	1 cut(s)	1648
BsrGI	TGTACA	2 cut(s)	798, 2533
BsrI	ACTGG	3 cut(s)	878, 1543, 2685
BssAI	RCCGGY	1 cut(s)	1648
BssECI	CCNNGG	5 cut(s)	603, 814, 1553, 1933, 2117
BssNAI	GTATAC	2 cut(s)	1739, 1981
BssSI	CACGAG	2 cut(s)	1671, 2961
BssT1I	CCWWGG	3 cut(s)	603, 1553, 2117
Bst1107I	GTATAC	2 cut(s)	1739, 1981
Bst2BI	CACGAG	2 cut(s)	1671, 2961
Bst2UI	CCWGG	2 cut(s)	702, 1934
Bst4CI	ACNGT	8 cut(s)	646, 818, 1781, 1985, 2032, 2173, 2335, 2419
Bst6I	CTCTTC	8 cut(s)	213, 219, 264, 291, 734, 1174, 1844, 2700
BstAFI	CTTAAG	1 cut(s)	542
BstAUI	TGTACA	2 cut(s)	798, 2533
BstBI	TTCGAA	1 cut(s)	2855
BstC8I	GCNNGC	5 cut(s)	387, 1650, 1930, 2091, 2475
BstDEI	CTNAG	9 cut(s)	132, 312, 318, 378, 567, 2451, 2558, 2820, 2876
BstDSI	CCRYGG	2 cut(s)	603, 814
BstEII	GGTNACC	1 cut(s)	704
BstENI	CCTNNNNNAGG	1 cut(s)	1913
BstF5I	GGATG	7 cut(s)	692, 754, 1164, 1366, 1683, 2786, 2902
BstFNI	CGCG	1 cut(s)	2998
BstHHI	GCGC	1 cut(s)	2998
BstMAI	GTCTC	6 cut(s)	63, 308, 798, 1593, 1959, 2361
BstMCI	CGRYCG	1 cut(s)	3002
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 1925
BstNI	CCWGG	2 cut(s)	702, 1934
BstNSI	RCATGY	6 cut(s)	409, 1415, 1802, 1839, 2613, 2799
BstPAI	GACNNNNGTC	1 cut(s)	3004
BstPI	GGTNACC	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	700, 1932
BstSFI	CTRYAG	6 cut(s)	79, 201, 252, 624, 1967, 2865
BstUI	CGCG	1 cut(s)	2998
BstV1I	GCAGC	8 cut(s)	11, 338, 341, 344, 366, 2584, 2851, 3044
BstV2I	GAAGAC	5 cut(s)	1019, 2085, 2375, 2956, 3030
BstX2I	RGATCY	2 cut(s)	1905, 2113
BstXI	CCANNNNNNTGG	1 cut(s)	1293
BstYI	RGATCY	2 cut(s)	1905, 2113
BstZ17I	GTATAC	2 cut(s)	1739, 1981
Bsu15I	ATCGAT	2 cut(s)	2694, 2809
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	105, 687, 1919, 2265, 2598
BsuTUI	ATCGAT	2 cut(s)	2694, 2809
BtgI	CCRYGG	2 cut(s)	603, 814
BtsCI	GGATG	7 cut(s)	692, 754, 1164, 1366, 1683, 2786, 2902
BtsI	GCAGTG	1 cut(s)	2484
BtsIMutI	CAGTG	4 cut(s)	871, 1206, 1550, 2484
Cac8I	GCNNGC	5 cut(s)	387, 1650, 1930, 2091, 2475
CciI	TCATGA	1 cut(s)	2524
CfoI	GCGC	1 cut(s)	2998
Cfr10I	RCCGGY	1 cut(s)	1648
Cfr13I	GGNCC	5 cut(s)	149, 685, 908, 941, 2263
ClaI	ATCGAT	2 cut(s)	2694, 2809
CseI	GACGC	2 cut(s)	1262, 2933
CsiI	ACCWGGT	1 cut(s)	700
DdeI	CTNAG	9 cut(s)	132, 312, 318, 378, 567, 2451, 2558, 2820, 2876
DraI	TTTAAA	3 cut(s)	640, 1789, 2074
DriI	GACNNNNNGTC	1 cut(s)	1725
EaeI	YGGCCR	1 cut(s)	2596
Eam1104I	CTCTTC	8 cut(s)	213, 219, 264, 291, 734, 1174, 1844, 2700
Eam1105I	GACNNNNNGTC	1 cut(s)	1725
EarI	CTCTTC	8 cut(s)	213, 219, 264, 291, 734, 1174, 1844, 2700
Eco130I	CCWWGG	3 cut(s)	603, 1553, 2117
Eco147I	AGGCCT	1 cut(s)	1919
Eco32I	GATATC	1 cut(s)	1512
Eco47I	GGWCC	3 cut(s)	149, 908, 941
Eco57I	CTGAAG	5 cut(s)	665, 1295, 1465, 1847, 2240
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	704
EcoNI	CCTNNNNNAGG	1 cut(s)	1913
EcoO109I	RGGNCCY	3 cut(s)	908, 941, 2263
EcoO65I	GGTNACC	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	700, 1932
EcoRV	GATATC	1 cut(s)	1512
EcoT14I	CCWWGG	3 cut(s)	603, 1553, 2117
EcoT22I	ATGCAT	2 cut(s)	490, 2788
ErhI	CCWWGG	3 cut(s)	603, 1553, 2117
FalI	AAGNNNNNCTT	6 cut(s)	525, 557, 536, 568, 728, 760
FaqI	GGGAC	3 cut(s)	894, 1439, 1460
FauI	CCCGC	1 cut(s)	1148
FblI	GTMKAC	2 cut(s)	1738, 1980
Fnu4HI	GCNGC	9 cut(s)	25, 327, 330, 333, 355, 667, 2573, 2865, 3033
FokI	GGATG	7 cut(s)	679, 761, 1171, 1373, 1670, 2773, 2909
Fsp4HI	GCNGC	9 cut(s)	25, 327, 330, 333, 355, 667, 2573, 2865, 3033
FspBI	CTAG	8 cut(s)	398, 453, 833, 974, 1007, 1119, 1866, 2349
GlaI	GCGC	1 cut(s)	2997
GluI	GCNGC	9 cut(s)	25, 327, 330, 333, 355, 667, 2573, 2865, 3033
GsaI	CCCAGC	1 cut(s)	2251
GsuI	CTGGAG	2 cut(s)	944, 2795
HaeIII	GGCC	5 cut(s)	105, 687, 1919, 2265, 2598
HapII	CCGG	3 cut(s)	1649, 2599, 3002
HgaI	GACGC	2 cut(s)	1262, 2933
HhaI	GCGC	1 cut(s)	2998
Hin6I	GCGC	1 cut(s)	2996
HinP1I	GCGC	1 cut(s)	2996
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HindIII	AAGCTT	2 cut(s)	92, 1997
HpaII	CCGG	3 cut(s)	1649, 2599, 3002
HphI	GGTGA	4 cut(s)	290, 573, 690, 698
Hpy166II	GTNNAC	8 cut(s)	139, 985, 1435, 1739, 1981, 2756, 2817, 3068
Hpy8I	GTNNAC	8 cut(s)	139, 985, 1435, 1739, 1981, 2756, 2817, 3068
Hpy99I	CGWCG	2 cut(s)	40, 2949
HpyCH4III	ACNGT	8 cut(s)	646, 818, 1781, 1985, 2032, 2173, 2335, 2419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 1925
HpyF3I	CTNAG	9 cut(s)	132, 312, 318, 378, 567, 2451, 2558, 2820, 2876
HspAI	GCGC	1 cut(s)	2996
KroI	GCCGGC	1 cut(s)	1648
KroNI	GCCGGC	1 cut(s)	1650
LguI	GCTCTTC	2 cut(s)	734, 1174
LmnI	GCTCC	4 cut(s)	497, 1348, 2086, 2569
Lsp1109I	GCAGC	8 cut(s)	11, 338, 341, 344, 366, 2584, 2851, 3044
LweI	GCATC	5 cut(s)	742, 1651, 2401, 2773, 2795
MabI	ACCWGGT	1 cut(s)	700
MaeI	CTAG	8 cut(s)	398, 453, 833, 974, 1007, 1119, 1866, 2349
MaeIII	GTNAC	7 cut(s)	455, 704, 1129, 2123, 2446, 2899, 3082
MbiI	CCGCTC	1 cut(s)	1155
MfeI	CAATTG	1 cut(s)	2371
MflI	RGATCY	2 cut(s)	1905, 2113
MhlI	GDGCHC	1 cut(s)	873
MlyI	GAGTC	6 cut(s)	69, 1075, 1205, 2498, 2812, 3014
MmeI	TCCRAC	5 cut(s)	18, 192, 325, 1512, 2694
Mph1103I	ATGCAT	2 cut(s)	490, 2788
MroNI	GCCGGC	1 cut(s)	1648
MroXI	GAANNNNTTC	4 cut(s)	1467, 1661, 2162, 2225
MslI	CAYNNNNRTG	3 cut(s)	1021, 1291, 2108
MspA1I	CMGCKG	1 cut(s)	1897
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	3 cut(s)	1649, 2599, 3002
MspR9I	CCNGG	2 cut(s)	702, 1934
MunI	CAATTG	1 cut(s)	2371
Mva1269I	GAATGC	1 cut(s)	2883
MvaI	CCWGG	2 cut(s)	702, 1934
MvnI	CGCG	1 cut(s)	2998
MwoI	GCNNNNNNNGC	2 cut(s)	332, 1925
NaeI	GCCGGC	1 cut(s)	1650
NcoI	CCATGG	1 cut(s)	603
NgoMIV	GCCGGC	1 cut(s)	1648
NlaIV	GGNNCC	4 cut(s)	550, 910, 2115, 2541
NmuCI	GTSAC	2 cut(s)	704, 2446
NsiI	ATGCAT	2 cut(s)	490, 2788
NspI	RCATGY	6 cut(s)	409, 1415, 1802, 1839, 2613, 2799
NspV	TTCGAA	1 cut(s)	2855
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	2524
PceI	AGGCCT	1 cut(s)	1919
PciI	ACATGT	2 cut(s)	1798, 2795
PciSI	GCTCTTC	2 cut(s)	734, 1174
PctI	GAATGC	1 cut(s)	2883
PdiI	GCCGGC	1 cut(s)	1650
PdmI	GAANNNNTTC	4 cut(s)	1467, 1661, 2162, 2225
PfeI	GAWTC	7 cut(s)	629, 851, 1615, 2602, 2732, 2770, 2824
PkrI	GCNGC	9 cut(s)	26, 328, 331, 334, 356, 668, 2574, 2866, 3034
PleI	GAGTC	6 cut(s)	69, 1074, 1205, 2497, 2812, 3013
PpsI	GAGTC	6 cut(s)	69, 1074, 1205, 2497, 2812, 3013
PpuMI	RGGWCCY	2 cut(s)	908, 941
PscI	ACATGT	2 cut(s)	1798, 2795
PshAI	GACNNNNGTC	1 cut(s)	3004
PshBI	ATTAAT	1 cut(s)	824
PsiI	TTATAA	1 cut(s)	2748
Psp5II	RGGWCCY	2 cut(s)	908, 941
Psp6I	CCWGG	2 cut(s)	700, 1932
PspEI	GGTNACC	1 cut(s)	704
PspFI	CCCAGC	1 cut(s)	2247
PspGI	CCWGG	2 cut(s)	700, 1932
PspN4I	GGNNCC	4 cut(s)	550, 910, 2115, 2541
PspPI	GGNCC	5 cut(s)	149, 685, 908, 941, 2263
PspPPI	RGGWCCY	2 cut(s)	908, 941
PstI	CTGCAG	2 cut(s)	1971, 2869
PsuI	RGATCY	2 cut(s)	1905, 2113
PvuII	CAGCTG	1 cut(s)	1897
RseI	CAYNNNNRTG	3 cut(s)	1021, 1291, 2108
SapI	GCTCTTC	2 cut(s)	734, 1174
SatI	GCNGC	9 cut(s)	25, 327, 330, 333, 355, 667, 2573, 2865, 3033
Sau96I	GGNCC	5 cut(s)	149, 685, 908, 941, 2263
SchI	GAGTC	6 cut(s)	69, 1075, 1205, 2498, 2812, 3014
ScrFI	CCNGG	2 cut(s)	702, 1934
SduI	GDGCHC	1 cut(s)	873
SexAI	ACCWGGT	1 cut(s)	700
SfaNI	GCATC	5 cut(s)	742, 1651, 2401, 2773, 2795
SfcI	CTRYAG	6 cut(s)	79, 201, 252, 624, 1967, 2865
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	2855
SinI	GGWCC	3 cut(s)	149, 908, 941
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	3 cut(s)	1021, 1291, 2108
SmlI	CTYRAG	7 cut(s)	95, 371, 542, 866, 1063, 1620, 2137
SmoI	CTYRAG	7 cut(s)	95, 371, 542, 866, 1063, 1620, 2137
SseBI	AGGCCT	1 cut(s)	1919
SsiI	CCGC	3 cut(s)	667, 1155, 2339
SspMI	CTAG	8 cut(s)	398, 453, 833, 974, 1007, 1119, 1866, 2349
StuI	AGGCCT	1 cut(s)	1919
StyD4I	CCNGG	2 cut(s)	700, 1932
StyI	CCWWGG	3 cut(s)	603, 1553, 2117
TaaI	ACNGT	8 cut(s)	646, 818, 1781, 1985, 2032, 2173, 2335, 2419
TaqI	TCGA	7 cut(s)	372, 673, 1776, 2694, 2809, 2855, 2947
TatI	WGTACW	6 cut(s)	422, 798, 862, 1781, 2533, 2652
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	7 cut(s)	629, 851, 1615, 2602, 2732, 2770, 2824
TscAI	CASTG	4 cut(s)	878, 1213, 1550, 2484
TseFI	GTSAC	2 cut(s)	704, 2446
TseI	GCWGC	8 cut(s)	24, 326, 329, 332, 354, 2572, 2864, 3032
Tsp45I	GTSAC	2 cut(s)	704, 2446
TspGWI	ACGGA	1 cut(s)	1676
TspRI	CASTG	4 cut(s)	878, 1213, 1550, 2484
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	3 cut(s)	149, 908, 941
VspI	ATTAAT	1 cut(s)	824
XagI	CCTNNNNNAGG	1 cut(s)	1913
XapI	RAATTY	7 cut(s)	536, 719, 1387, 1603, 2162, 2326, 2906
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	6 cut(s)	409, 1415, 1802, 1839, 2613, 2799
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	1738, 1980
XmnI	GAANNNNTTC	4 cut(s)	1467, 1661, 2162, 2225
XspI	CTAG	8 cut(s)	398, 453, 833, 974, 1007, 1119, 1866, 2349
Zsp2I	ATGCAT	2 cut(s)	490, 2788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.