Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017952

Physical Location & Seq

Genomic Coordinates Reverse (-)

3460000 .. 3461485

Gene Structure 1486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTTCGCTACTGGAATCACGACGTCTTCAAATCCAACTTTTCTTGGTCTAAAGATCTCCAACACAAGTCTACGTTCTGTGGTTTCATGTAATTCGATTTCGTTTCCTTCTTTGTCATATGTGAATCTCAACCTCAATCGGAGAAACCGCCTTTCTGTTCGATCCGCTTCGGTTCCAGCTGCACCTGCAATGGAGGGACTGAAGCCGGCGATATCTCTGTCAGAAAATGCACTTAAGCATCTGAGTAAGATGAGATCAGAACGTGGGGAAGATTTGTGCTTGAGAATTGGAGTCAAACAAGGAGGATGCTCGGGTATGTCCTACACGATGGACTTTGAAAACAGAGCAAATGCAAGACCAGATGATTCCACTATCGAATACCAGGGATTCACTATAGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTTGGAATGCAGCTTGATTACAGCGATGCTTTGATTGGTGGAGGCTTCTCTTTCTCGAACCCTAACGCTACACAAACCTGTGGATGTGGGAAGTCTTTTGCTGCCGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

180

Amino Acids

19.34

Weight (kDa)

8.57

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	72 - 174	5.6e-21	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10500
fragaria_vesca	FvH4_1g22881
malus_domestica	MD15G1331200.v1.1
prunus_persica	Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis	pycom15g29400
rosa_chinensis	RchiOBHm_Chr2g0117221
rosa_laevigata	RLG00000018336
rosa_roxburghii	Rroxscaffold_2G00126630
rosa_rugosa	Rorug02G0211400
rosa_wichuraiana	Rw2G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	196
AatII	GACGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	2 cut(s)	151, 168
AclWI	GGATC	2 cut(s)	159, 401
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	33, 341
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	2 cut(s)	182, 442
AluI	AGCT	2 cut(s)	182, 442
AlwI	GGATC	2 cut(s)	159, 401
Ama87I	CYCGRG	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	182, 439, 530
AvaI	CYCGRG	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	169, 451, 517
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	3 cut(s)	183, 440, 531
BlsI	GCNGC	3 cut(s)	184, 441, 532
Bme1390I	CCNGG	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	250, 299, 445
BpiI	GAAGAC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	314, 518
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	169, 451, 517
BsgI	GTGCAG	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	441
BsoBI	CYCGRG	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	57, 164, 257, 406
BspACI	CCGC	2 cut(s)	151, 168
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	159, 401
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	57, 164, 257, 406
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	210, 419
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	314, 518
BstKTI	GATC	4 cut(s)	60, 167, 260, 409
BstMBI	GATC	4 cut(s)	57, 164, 257, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	169, 451, 517
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	314, 518
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	210, 419
Cfr10I	RCCGGY	1 cut(s)	208
CviAII	CATG	2 cut(s)	90, 418
CviJI	RGCY	5 cut(s)	5, 182, 208, 442, 474
CviKI_1	RGCY	5 cut(s)	5, 182, 208, 442, 474
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	4 cut(s)	59, 166, 259, 408
DpnII	GATC	4 cut(s)	57, 164, 257, 406
Eco32I	GATATC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	216
FaeI	CATG	2 cut(s)	93, 421
FaiI	YATR	6 cut(s)	91, 121, 123, 320, 398, 419
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	89, 417
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	183, 440, 531
FokI	GGATG	2 cut(s)	321, 525
Fsp4HI	GCNGC	3 cut(s)	183, 440, 531
GluI	GCNGC	3 cut(s)	183, 440, 531
HapII	CCGG	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	93, 421
HinfI	GANTC	5 cut(s)	18, 127, 294, 368, 390
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	4 cut(s)	144, 226, 246, 262
Hpy188III	TCNNGA	2 cut(s)	22, 484
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	120
HpyCH4IV	ACGT	3 cut(s)	26, 76, 265
HpyCH4V	TGCA	5 cut(s)	185, 191, 233, 356, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	245
HpySE526I	ACGT	3 cut(s)	26, 76, 265
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	93, 421
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	57, 164, 257, 406
LpnPI	CCDG	7 cut(s)	192, 201, 222, 371, 375, 398, 520
Lsp1109I	GCAGC	3 cut(s)	169, 451, 517
LweI	GCATC	3 cut(s)	250, 299, 445
MaeII	ACGT	3 cut(s)	26, 76, 265
MalI	GATC	4 cut(s)	59, 166, 259, 408
MboI	GATC	4 cut(s)	57, 164, 257, 406
MboII	GAAGA	2 cut(s)	21, 284
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	2 cut(s)	94, 288
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	62, 87
MnlI	CCTC	4 cut(s)	146, 190, 299, 464
MroNI	GCCGGC	1 cut(s)	208
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	188
NaeI	GCCGGC	1 cut(s)	210
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	4 cut(s)	57, 164, 257, 406
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	93, 421
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	441
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	18, 127, 368, 390
PkrI	GCNGC	3 cut(s)	184, 441, 532
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	183, 440, 531
Sau3AI	GATC	4 cut(s)	57, 164, 257, 406
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	8 cut(s)	29, 79, 138, 184, 190, 268, 444, 509
SfaNI	GCATC	3 cut(s)	250, 299, 445
SfcI	CTRYAG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	236, 283
SmoI	CTYRAG	2 cut(s)	236, 283
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	2 cut(s)	94, 288
SsiI	CCGC	2 cut(s)	151, 168
StyD4I	CCNGG	1 cut(s)	384
TaiI	ACGT	3 cut(s)	29, 79, 268
TaqI	TCGA	4 cut(s)	98, 163, 378, 485
TasI	AATT	2 cut(s)	94, 288
TfiI	GAWTC	4 cut(s)	18, 127, 368, 390
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseI	GCWGC	3 cut(s)	182, 439, 530
TspDTI	ATGAA	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	236
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	73
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.