Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017952

Physical Location & Seq

Genomic Coordinates Forward (+)

14814712 .. 14817479

Gene Structure 2768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATGGCGTTCTCTGCAATAACAACGCACTGCCCCTCCTCTCTTCTTCGTCTGCCGGCGACGAGCCCGTCGGCATCGTCGTCGTCTTCAGCTCGGAATTCAGTCTCTTTCCGATTCTCATCCACAAGTCTCAGCCGTGGAAGACGCATCTCAATTCGATCCGTTTCCACTTCCGCTGCACCGAAATCCGAGGGCATTGCACCTGCAATTTCGGTTACGGAGAATGCATTGAAGCACTTTAATAAGATGAGGGCCGAGCGTAATGAGGATTTGTGCTTGAGAATTGGTGTTAAACAGGGTGGATGCTCTGGCATGTCGTACACGATGGACTTTGAGAGCAAAGAGAACGCTAGACCAGACGATTCCATTATTGAGTATAATGGTTTCGAGATAGTTTGCGATCCAAAGAGCCTCCTCTTCTTGTATGGCATGCAATTGGACTACAGTGATGCTCTTATTGGTGGAGGCTTTTCTTTCAAGAATCCAAATGCCACACAAACATGTGGTTGCGGTAAATCTTTTGCCGCAGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

179

Amino Acids

19.13

Weight (kDa)

8.56

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	70 - 172	4.2e-22	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10500
fragaria_vesca	FvH4_1g22881
malus_domestica	MD15G1331200.v1.1
prunus_persica	Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis	pycom15g29400
rosa_chinensis	RchiOBHm_Chr2g0117221
rosa_laevigata	RLG00000018336
rosa_roxburghii	Rroxscaffold_2G00126630
rosa_rugosa	Rorug02G0211400
rosa_wichuraiana	Rw2G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
AasI	GACNNNNNNGTC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	211
AciI	CCGC	3 cut(s)	174, 510, 525
AclWI	GGATC	2 cut(s)	153, 395
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	232, 478
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	109, 134
AlwI	GGATC	2 cut(s)	153, 395
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	68
BbsI	GAAGAC	2 cut(s)	78, 148
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	4 cut(s)	63, 97, 179, 213
BcoDI	GTCTC	2 cut(s)	109, 134
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	177, 525
BlsI	GCNGC	2 cut(s)	178, 526
BmgT120I	GGNCC	1 cut(s)	252
BmsI	GCATC	4 cut(s)	83, 156, 293, 439
BpiI	GAAGAC	2 cut(s)	78, 148
BpuEI	CTTGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	136, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse118I	RCCGGY	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	136, 189
BseGI	GGATG	2 cut(s)	119, 308
BseJI	GATNNNNATC	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	28, 404
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	109, 134
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	158, 400
BspACI	CCGC	3 cut(s)	174, 510, 525
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	153, 395
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	136, 189
BssMI	GATC	2 cut(s)	158, 400
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	2 cut(s)	48, 422
BstC8I	GCNNGC	2 cut(s)	57, 431
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	119, 308
BstKTI	GATC	2 cut(s)	161, 403
BstMAI	GTCTC	2 cut(s)	109, 134
BstMBI	GATC	2 cut(s)	158, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNSI	RCATGY	3 cut(s)	316, 433, 504
BstSFI	CTRYAG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	2 cut(s)	78, 148
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	119, 308
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 451
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	57, 431
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	3 cut(s)	313, 430, 501
CviJI	RGCY	6 cut(s)	66, 92, 135, 254, 411, 468
CviKI_1	RGCY	6 cut(s)	66, 92, 135, 254, 411, 468
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	160, 402
DpnII	GATC	2 cut(s)	158, 400
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	48, 422
EarI	CTCTTC	2 cut(s)	48, 422
Eco24I	GRGCYC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	3 cut(s)	316, 433, 504
FaiI	YATR	5 cut(s)	314, 378, 426, 431, 502
FatI	CATG	3 cut(s)	312, 429, 500
Fnu4HI	GCNGC	2 cut(s)	177, 525
FokI	GGATG	2 cut(s)	106, 315
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	177, 525
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	2 cut(s)	177, 525
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	316, 433, 504
HinfI	GANTC	3 cut(s)	114, 362, 481
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	96, 113, 190
Hpy188III	TCNNGA	2 cut(s)	388, 478
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	4 cut(s)	64, 73, 82, 85
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	6 cut(s)	17, 179, 200, 206, 227, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	316, 433, 504
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	158, 400
LpnPI	CCDG	5 cut(s)	69, 216, 281, 294, 369
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	4 cut(s)	83, 156, 293, 439
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	160, 402
MboI	GATC	2 cut(s)	158, 400
MboII	GAAGA	5 cut(s)	35, 38, 78, 153, 409
MfeI	CAATTG	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	5 cut(s)	97, 153, 207, 282, 434
MnlI	CCTC	8 cut(s)	46, 49, 184, 243, 259, 422, 425, 458
Mph1103I	ATGCAT	1 cut(s)	229
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	2 cut(s)	240, 291
MslI	CAYNNNNRTG	1 cut(s)	499
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	14
NaeI	GCCGGC	1 cut(s)	57
NdeII	GATC	2 cut(s)	158, 400
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	316, 433, 504
NmeAIII	GCCGAG	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	3 cut(s)	316, 433, 504
PaeI	GCATGC	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	211
PciI	ACATGT	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	114, 362, 481
PkrI	GCNGC	2 cut(s)	178, 526
PscI	ACATGT	1 cut(s)	500
PspPI	GGNCC	1 cut(s)	252
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	240, 291
SatI	GCNGC	2 cut(s)	177, 525
Sau3AI	GATC	2 cut(s)	158, 400
Sau96I	GGNCC	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	2 cut(s)	94, 205
SfaNI	GCATC	4 cut(s)	83, 156, 293, 439
SfcI	CTRYAG	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SphI	GCATGC	1 cut(s)	433
Sse9I	AATT	5 cut(s)	97, 153, 207, 282, 434
SsiI	CCGC	3 cut(s)	174, 510, 525
SspMI	CTAG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	157, 387
TasI	AATT	5 cut(s)	97, 153, 207, 282, 434
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	114, 362, 481
Tru1I	TTAA	2 cut(s)	240, 291
Tru9I	TTAA	2 cut(s)	240, 291
TscAI	CASTG	2 cut(s)	35, 451
TseI	GCWGC	1 cut(s)	176
TspGWI	ACGGA	2 cut(s)	151, 233
TspRI	CASTG	2 cut(s)	35, 451
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	3 cut(s)	316, 433, 504
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.