Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017952

Physical Location & Seq

Genomic Coordinates Reverse (-)

61983981 .. 61987037

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCACCTGTCATTTTGCAGAGTTGCAGAAAAAAAAAAAAAAATTAATGGCGTTCTCTGCAATAACAACGCACTCCCCTCCTCTCTTCTTCGTCCGCCGGCGACGAACCCGTCGGTATCGTCTTCAGCTCGGAATTCAATTTCCTTCAGATTTTCATCCACAAGTCTCAGCCGTGGAAGAAGACCCATTTCAATTCGATCCGTTTCAACTTCGGCTGCGCCGAAATCCGAGGGCATTGCACCGGCGATTTCACTTACGGAGAATGCGTTGAAGCATTTCAATAAGATGAGAGCCGAACGTAATGAGAATTTATGCTTGAGAATTGGTGTTAAACAGGGTGGATGCTCTGGCATGTCGTATACGATGGACTTCGAGAGCAAAGAAAATGCAAGGCCAGATGATTCCATCATGGAATATAATGGTTTTGAGATAGTTTGTGATCCAAAGAGTCTCCTCTTCTTGTATGGCATGCAATTGGACTACAGTGATGCTCTTATTGGCGGAGGCTTTTCTTTCAAGAACCCTAATGCCACACAAACATGTGGTTGCGGTAAATCTTTTGCCGCAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

191

Amino Acids

20.75

Weight (kDa)

9.26

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	83 - 185	6.9e-22	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10500
fragaria_vesca	FvH4_1g22881
malus_domestica	MD15G1331200.v1.1
prunus_persica	Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis	pycom15g29400
rosa_chinensis	RchiOBHm_Chr2g0117221
rosa_laevigata	RLG00000018336
rosa_roxburghii	Rroxscaffold_2G00126630
rosa_rugosa	Rorug02G0211400
rosa_wichuraiana	Rw2G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	359
AciI	CCGC	4 cut(s)	95, 501, 549, 564
AclWI	GGATC	2 cut(s)	192, 434
AcsI	RAATTY	2 cut(s)	133, 307
AcuI	CTGAAG	2 cut(s)	108, 130
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	6 cut(s)	138, 192, 207, 271, 280, 517
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	170, 455
AlwI	GGATC	2 cut(s)	192, 434
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	133, 307
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	114, 187
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	358, 413
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BcoDI	GTCTC	2 cut(s)	170, 455
BfmI	CTRYAG	1 cut(s)	481
BisI	GCNGC	2 cut(s)	216, 564
BlsI	GCNGC	2 cut(s)	217, 565
BmsI	GCATC	2 cut(s)	332, 478
BpiI	GAAGAC	2 cut(s)	114, 187
BpuEI	CTTGAG	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	172, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse118I	RCCGGY	2 cut(s)	97, 241
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	172, 228
BseGI	GGATG	2 cut(s)	155, 347
BseJI	GATNNNNATC	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	70, 443
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	98, 242
BsmAI	GTCTC	2 cut(s)	170, 455
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	197, 439
BspACI	CCGC	4 cut(s)	95, 501, 549, 564
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	192, 434
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	97, 241
BssAI	RCCGGY	2 cut(s)	97, 241
BssECI	CCNNGG	2 cut(s)	172, 228
BssMI	GATC	2 cut(s)	197, 439
BssNAI	GTATAC	1 cut(s)	360
Bst1107I	GTATAC	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	90, 461
BstC8I	GCNNGC	2 cut(s)	99, 470
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	155, 347
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	200, 442
BstMAI	GTCTC	2 cut(s)	170, 455
BstMBI	GATC	2 cut(s)	197, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNSI	RCATGY	3 cut(s)	355, 472, 543
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	2 cut(s)	114, 187
BstZ17I	GTATAC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	155, 347
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	99, 470
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	2 cut(s)	97, 241
CviAII	CATG	4 cut(s)	352, 409, 469, 540
CviJI	RGCY	6 cut(s)	128, 171, 215, 293, 394, 507
CviKI_1	RGCY	6 cut(s)	128, 171, 215, 293, 394, 507
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	199, 441
DpnII	GATC	2 cut(s)	197, 439
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	90, 461
EarI	CTCTTC	2 cut(s)	90, 461
EciI	GGCGGA	2 cut(s)	84, 516
Eco57I	CTGAAG	2 cut(s)	108, 130
EcoRI	GAATTC	1 cut(s)	133
FaeI	CATG	4 cut(s)	355, 412, 472, 543
FaiI	YATR	8 cut(s)	313, 353, 360, 410, 417, 465, 470, 541
FatI	CATG	4 cut(s)	351, 408, 468, 539
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	216, 564
FokI	GGATG	2 cut(s)	142, 354
Fsp4HI	GCNGC	2 cut(s)	216, 564
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	216, 564
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	98, 242
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	355, 412, 472, 543
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	2 cut(s)	401, 448
HpaII	CCGG	2 cut(s)	98, 242
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	3 cut(s)	132, 149, 229
Hpy188III	TCNNGA	2 cut(s)	373, 517
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	2 cut(s)	106, 115
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	7 cut(s)	4, 18, 26, 60, 239, 389, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	4 cut(s)	355, 412, 472, 543
HspAI	GCGC	1 cut(s)	218
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	197, 439
LpnPI	CCDG	6 cut(s)	20, 111, 255, 320, 333, 408
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	332, 478
MaeII	ACGT	1 cut(s)	298
MalI	GATC	2 cut(s)	199, 441
MboI	GATC	2 cut(s)	197, 439
MboII	GAAGA	6 cut(s)	77, 80, 114, 189, 192, 448
MfeI	CAATTG	1 cut(s)	473
MluCI	AATT	7 cut(s)	42, 133, 138, 192, 307, 321, 473
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	5 cut(s)	88, 91, 223, 464, 497
MreI	CGCCGGCG	1 cut(s)	97
MroNI	GCCGGC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	2 cut(s)	45, 330
MslI	CAYNNNNRTG	1 cut(s)	538
MspI	CCGG	2 cut(s)	98, 242
MunI	CAATTG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	57
NaeI	GCCGGC	1 cut(s)	99
NdeII	GATC	2 cut(s)	197, 439
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	355, 412, 472, 543
NspI	RCATGY	3 cut(s)	355, 472, 543
PaeI	GCATGC	1 cut(s)	472
PciI	ACATGT	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	2 cut(s)	218, 263
PctI	GAATGC	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	217, 565
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
PscI	ACATGT	1 cut(s)	539
PshBI	ATTAAT	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	45, 330
SatI	GCNGC	2 cut(s)	216, 564
Sau3AI	GATC	2 cut(s)	197, 439
SchI	GAGTC	1 cut(s)	457
SetI	ASST	3 cut(s)	9, 130, 301
SfaNI	GCATC	2 cut(s)	332, 478
SfcI	CTRYAG	1 cut(s)	481
SgrAI	CRCCGGYG	2 cut(s)	97, 241
SmiMI	CAYNNNNRTG	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SphI	GCATGC	1 cut(s)	472
Sse9I	AATT	7 cut(s)	42, 133, 138, 192, 307, 321, 473
SsiI	CCGC	4 cut(s)	95, 501, 549, 564
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	196, 372
TasI	AATT	7 cut(s)	42, 133, 138, 192, 307, 321, 473
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	45, 330
Tru9I	TTAA	2 cut(s)	45, 330
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	2 cut(s)	190, 272
TspRI	CASTG	1 cut(s)	490
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	2 cut(s)	133, 307
XceI	RCATGY	3 cut(s)	355, 472, 543
XmiI	GTMKAC	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.