Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017952

Physical Location & Seq

Genomic Coordinates Forward (+)

19878070 .. 19882426

Gene Structure 4357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0211400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACAGAGGTTGATGAAGATCTGGTGGAGAACATCCTGTCAACTCTGCATCCCAAGGCTTTGGTGCGATTGAAATGCGCCTCTAAAGGGTGGTATGCACTGATCAACAATCCCAGGTTCGTAGCTAAGCACCTCTCCGATTACAATTCCAATTCCAACCGTCTGCTCCGTATGAAGAAGCGCTTAGTCTCCAAGAACATCAAGGACACTGCTGATGAGACTGCAGAAGAAGAAGAAGAAGAGCTAGTGTTTTCGTTGCTTAATTTATGCAATAATGATGATGATATTGATAATGGTGAGGACATCATTACTGTCTCTAGTGTCGAGGATATCAAGATTCCTCTTTCAATTCCGGAATTCAAGCTTCTTCCTCCCTTTCCATACCTTGCAGATGTTGATTGGGATGAAGATGTGTGGTCCAAGGCAAGCATTATTCCTGCAACTGTGTTAACCATTCTGGCTGGAAGGTTCAAAGACAAGAGGGTTGGCCTATTGAAGTGCATAAATTGCAGTAAAGGAACAAGCGCAATAAGGTGTGCATACTTTGCAATTAATGATGGGCATGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

190

Amino Acids

21.36

Weight (kDa)

4.89

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 40	2e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10500
fragaria_vesca	FvH4_1g22881
malus_domestica	MD15G1331200.v1.1
prunus_persica	Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis	pycom15g29400
rosa_chinensis	RchiOBHm_Chr2g0117221
rosa_laevigata	RLG00000018336
rosa_roxburghii	Rroxscaffold_2G00126630
rosa_rugosa	Rorug02G0211400
rosa_wichuraiana	Rw2G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	356
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	5 cut(s)	73, 348, 361, 472, 496
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	125, 244, 364
AluI	AGCT	3 cut(s)	125, 244, 364
Alw26I	GTCTC	3 cut(s)	193, 212, 319
Aor13HI	TCCGGA	1 cut(s)	352
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	487
ApoI	RAATTY	1 cut(s)	356
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	3 cut(s)	80, 183, 527
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	417
BccI	CCATC	1 cut(s)	551
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	115
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	193, 212, 319
BfaI	CTAG	2 cut(s)	245, 318
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	184
BglII	AGATCT	1 cut(s)	19
BlpI	GCTNAGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	54, 113, 420
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	3 cut(s)	54, 113, 420
BseGI	GGATG	3 cut(s)	33, 49, 409
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	193, 212, 319
BsnI	GGCC	1 cut(s)	489
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	19, 102
Bsp1720I	GCTNAGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	489
BspEI	TCCGGA	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	54, 113, 420
BssMI	GATC	2 cut(s)	19, 102
BssT1I	CCWWGG	2 cut(s)	54, 420
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	3 cut(s)	161, 313, 445
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	2 cut(s)	507, 545
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	126, 184
BstF5I	GGATG	3 cut(s)	33, 49, 409
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	3 cut(s)	80, 183, 527
BstKTI	GATC	2 cut(s)	22, 105
BstMAI	GTCTC	3 cut(s)	193, 212, 319
BstMBI	GATC	2 cut(s)	19, 102
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 545
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	33, 49, 409
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	98, 207
Cac8I	GCNNGC	1 cut(s)	427
CfoI	GCGC	3 cut(s)	80, 183, 527
Cfr13I	GGNCC	1 cut(s)	417
CviAII	CATG	1 cut(s)	563
CviJI	RGCY	6 cut(s)	59, 125, 244, 364, 461, 489
CviKI_1	RGCY	6 cut(s)	59, 125, 244, 364, 461, 489
DdeI	CTNAG	2 cut(s)	126, 184
DpnI	GATC	2 cut(s)	21, 104
DpnII	GATC	2 cut(s)	19, 102
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	54, 420
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	417
Eco47III	AGCGCT	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	54, 420
ErhI	CCWWGG	2 cut(s)	54, 420
FaeI	CATG	1 cut(s)	566
FaiI	YATR	7 cut(s)	96, 173, 268, 382, 503, 541, 564
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	102
FokI	GGATG	3 cut(s)	20, 36, 416
FspBI	CTAG	2 cut(s)	245, 318
GlaI	GCGC	3 cut(s)	79, 182, 526
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	489
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	3 cut(s)	80, 183, 527
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	3 cut(s)	78, 181, 525
HinP1I	GCGC	3 cut(s)	78, 181, 525
HincII	GTYRAC	2 cut(s)	42, 450
HindII	GTYRAC	2 cut(s)	42, 450
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	1 cut(s)	337
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	42, 450
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	334, 353
Hpy8I	GTNNAC	2 cut(s)	42, 450
HpyAV	CCTTC	2 cut(s)	459, 560
HpyCH4III	ACNGT	3 cut(s)	161, 313, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 545
HpyF3I	CTNAG	2 cut(s)	126, 184
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	3 cut(s)	78, 181, 525
Kpn2I	TCCGGA	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	102
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	19, 102
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	8 cut(s)	8, 50, 100, 127, 366, 443, 447, 450
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	245, 318
MalI	GATC	2 cut(s)	21, 104
MboI	GATC	2 cut(s)	19, 102
MboII	GAAGA	9 cut(s)	29, 187, 239, 242, 245, 248, 251, 359, 419
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	7 cut(s)	145, 151, 262, 348, 356, 505, 549
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	91, 143, 292, 319, 351, 381, 474
MroI	TCCGGA	1 cut(s)	352
MseI	TTAA	3 cut(s)	261, 449, 552
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	507, 545
NdeII	GATC	2 cut(s)	19, 102
NlaIII	CATG	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	261, 449, 552
Sau3AI	GATC	2 cut(s)	19, 102
Sau96I	GGNCC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	115
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	417
Sse9I	AATT	7 cut(s)	145, 151, 262, 348, 356, 505, 549
SspMI	CTAG	2 cut(s)	245, 318
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	2 cut(s)	54, 420
TaaI	ACNGT	3 cut(s)	161, 313, 445
TaqI	TCGA	1 cut(s)	324
TasI	AATT	7 cut(s)	145, 151, 262, 348, 356, 505, 549
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	3 cut(s)	261, 449, 552
Tru9I	TTAA	3 cut(s)	261, 449, 552
TscAI	CASTG	2 cut(s)	105, 214
TspDTI	ATGAA	3 cut(s)	30, 188, 420
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	105, 214
VpaK11BI	GGWCC	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	1 cut(s)	356
XspI	CTAG	2 cut(s)	245, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.