Prupe.6G169400_v2.0.a1

Iron-sulfur assembly protein IscA

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
17489787 .. 17493174
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G169400.1

Sequence Viewer

Length: 522 bp
ATGGCGTTCTCTGCAATTACTACGCACTGCCCCTCTCTTCTTCGTCCGCCGACGAACCTCCCTGTAACCTTTTCACCTCCTAATTCAATTTCGTTTCGATTTTCAAAGAATAATCTCAGCCGTAGAAAACCCCTTTCAATTCGATCAACTTCAACTTCGGCTGCACCGAAAACTGAGGGGCTTGCACCTGCAATTTCACTTACGGATAACGCATTGAAGCACTTCAATAAGATGAGATCTGAACGCGGTGAAGACTTATGCTTGAGAATTGGTGTCAAACAGGGTGGGTGCTCTGGCATGTCGTATACAATGGACTTTGAGAGTAGGGCCAACGCAAGGCCAGATGATTCCGTCATTGAATATAATGGTTTTGTTATGGTTTGTGATCCGAAGAGCCTCCTCTTCTTGTATGGCATGCAATTGGATTACAGTGACGCTCTTATCGGTGGAGGCTTTTCTTTCAAGAACCCCAATGCCACACAAACATGTGGTTGCGGTAAATCTTTTGCGGCGGAGATGTAG

Protein Analysis

174

Amino Acids

18.79

Weight (kDa)

8.97

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10500
fragaria_vesca FvH4_1g22881
malus_domestica MD15G1331200.v1.1
prunus_persica Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis pycom15g29400
rosa_chinensis RchiOBHm_Chr2g0117221
rosa_laevigata RLG00000018336
rosa_roxburghii Rroxscaffold_2G00126630
rosa_rugosa Rorug02G0211400
rosa_wichuraiana Rw2G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 305
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 47, 246, 495, 509, 512
AclWI GGATC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 336
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 8 cut(s) 87, 105, 138, 153, 217, 226, 359, 463
Alw21I GWGCWC 1 cut(s) 293
AlwI GGATC 1 cut(s) 380
AoxI GGCC 2 cut(s) 327, 338
ApeKI GCWGC 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 2 cut(s) 66, 260
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 196
BglII AGATCT 1 cut(s) 236
BisI GCNGC 2 cut(s) 162, 510
BlsI GCNGC 2 cut(s) 163, 511
BmgT120I GGNCC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 130, 165
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 329, 340
BsiHKAI GWGCWC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 336
BsnI GGCC 2 cut(s) 329, 340
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 143, 236, 385
BspACI CCGC 5 cut(s) 47, 246, 495, 509, 512
BspANI GGCC 2 cut(s) 329, 340
BspCNI CTCAG 2 cut(s) 129, 166
BspFNI CGCG 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 1 cut(s) 380
BspQI GCTCTTC 1 cut(s) 386
BssMI GATC 3 cut(s) 143, 236, 385
BssNAI GTATAC 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 3 cut(s) 42, 386, 407
BstC8I GCNNGC 2 cut(s) 183, 416
BstDEI CTNAG 2 cut(s) 116, 174
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 3 cut(s) 146, 239, 388
BstMBI GATC 3 cut(s) 143, 236, 385
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 3 cut(s) 301, 418, 489
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BstZ17I GTATAC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 329, 340
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 436
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 183, 416
Cfr13I GGNCC 1 cut(s) 327
CseI GACGC 1 cut(s) 443
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 3 cut(s) 298, 415, 486
CviJI RGCY 7 cut(s) 120, 161, 181, 329, 340, 396, 453
CviKI_1 RGCY 7 cut(s) 120, 161, 181, 329, 340, 396, 453
DdeI CTNAG 2 cut(s) 116, 174
DpnI GATC 3 cut(s) 145, 238, 387
DpnII GATC 3 cut(s) 143, 236, 385
Eam1104I CTCTTC 3 cut(s) 42, 386, 407
EarI CTCTTC 3 cut(s) 42, 386, 407
EciI GGCGGA 1 cut(s) 36
FaeI CATG 3 cut(s) 301, 418, 489
FaiI YATR 8 cut(s) 259, 299, 306, 363, 377, 411, 416, 487
FatI CATG 3 cut(s) 297, 414, 485
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 162, 510
Fsp4HI GCNGC 2 cut(s) 162, 510
GluI GCNGC 2 cut(s) 162, 510
HaeIII GGCC 2 cut(s) 329, 340
HgaI GACGC 1 cut(s) 443
Hin1II CATG 3 cut(s) 301, 418, 489
HinfI GANTC 1 cut(s) 347
HphI GGTGA 2 cut(s) 66, 260
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 2 cut(s) 241, 390
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 5 cut(s) 14, 164, 185, 191, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 116, 174
Hsp92II CATG 3 cut(s) 301, 418, 489
Kzo9I GATC 3 cut(s) 143, 236, 385
LguI GCTCTTC 1 cut(s) 386
LpnPI CCDG 5 cut(s) 75, 201, 266, 279, 354
Lsp1109I GCAGC 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 64, 431
MalI GATC 3 cut(s) 145, 238, 387
MboI GATC 3 cut(s) 143, 236, 385
MboII GAAGA 5 cut(s) 29, 32, 263, 394, 403
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 7 cut(s) 15, 82, 87, 138, 192, 267, 419
MnlI CCTC 7 cut(s) 43, 68, 87, 169, 407, 410, 443
MroXI GAANNNNTTC 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 484
MunI CAATTG 1 cut(s) 419
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 143, 236, 385
NlaIII CATG 3 cut(s) 301, 418, 489
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 3 cut(s) 301, 418, 489
PaeI GCATGC 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 196
PciI ACATGT 1 cut(s) 485
PciSI GCTCTTC 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 163, 511
PscI ACATGT 1 cut(s) 485
PspPI GGNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 386
SatI GCNGC 2 cut(s) 162, 510
Sau3AI GATC 3 cut(s) 143, 236, 385
Sau96I GGNCC 1 cut(s) 327
SduI GDGCHC 1 cut(s) 293
SetI ASST 4 cut(s) 60, 71, 79, 190
SmiMI CAYNNNNRTG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 418
Sse9I AATT 7 cut(s) 15, 82, 87, 138, 192, 267, 419
SsiI CCGC 5 cut(s) 47, 246, 495, 509, 512
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 2 cut(s) 97, 142
TasI AATT 7 cut(s) 15, 82, 87, 138, 192, 267, 419
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 1 cut(s) 347
TscAI CASTG 2 cut(s) 32, 436
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 431
TspGWI ACGGA 2 cut(s) 218, 340
TspRI CASTG 2 cut(s) 32, 436
XceI RCATGY 3 cut(s) 301, 418, 489
XmiI GTMKAC 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.