Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017952

Physical Location & Seq

Genomic Coordinates Forward (+)

28947410 .. 28950051

Gene Structure 2642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGTTCTCCGCAATAACAACGCACTCCCCTCCTCTCTTCTTCGTCCGCCGGCGACGAACCCGTCGGTATCGTCTTCAGCTCGGAATTCAATTTCCTTCAGATTTTCCTGCGCCGAAATCCGAGGGCATTGCACCGGCGATTTCACTTACGGAGAATGCGTTGAAGCATTTCAATAAGATGAGAGCCGAACGTAATGAGGATTTATGCTTGAGAATTGGTGTTAAACAGGGTGGATGCTCTGGCATGTCGTATACGATGGACTTCGAGAGCAAAGAAAATGCAAGGCCAGATGATTCCATCATGGAATATAATGGTTTTGAGATAGTTTGTGATCCAAAGAGTCTCCTCTTCTTGTATGGCATGCAATTGGACTACAGTGATGCTCTTATTGGCGGAGGCTTTTCTTTCAAGAACCCTAATGCCACACAAACATGTGGTTGCGGTAAATCTTTTGCCGCAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

8.29

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	48 - 150	4.1e-22	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10500
fragaria_vesca	FvH4_1g22881
malus_domestica	MD15G1331200.v1.1
prunus_persica	Prupe.6G169400_v2.0.a1 Prupe.6G169400_v2.0.a1
pyrus_communis	pycom15g29400
rosa_chinensis	RchiOBHm_Chr2g0117221
rosa_laevigata	RLG00000018336
rosa_roxburghii	Rroxscaffold_2G00126630
rosa_rugosa	Rorug02G0211400
rosa_wichuraiana	Rw2G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	5 cut(s)	12, 49, 396, 444, 459
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	2 cut(s)	62, 84
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	92, 166, 175, 412
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	68
BccI	CCATC	2 cut(s)	253, 308
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmsI	GCATC	2 cut(s)	227, 373
BpiI	GAAGAC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	2 cut(s)	51, 136
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	129
BseRI	GAGGAG	2 cut(s)	24, 338
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	52, 137
BsmAI	GTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	5 cut(s)	12, 49, 396, 444, 459
BspANI	GGCC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	51, 136
BssAI	RCCGGY	2 cut(s)	51, 136
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	334
BssNAI	GTATAC	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	44, 356
BstC8I	GCNNGC	2 cut(s)	53, 365
BstF5I	GGATG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	3 cut(s)	250, 367, 438
BstSFI	CTRYAG	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	68
BstZ17I	GTATAC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	53, 365
CfoI	GCGC	1 cut(s)	115
Cfr10I	RCCGGY	2 cut(s)	51, 136
CviAII	CATG	4 cut(s)	247, 304, 364, 435
CviJI	RGCY	4 cut(s)	82, 188, 289, 402
CviKI_1	RGCY	4 cut(s)	82, 188, 289, 402
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	44, 356
EarI	CTCTTC	2 cut(s)	44, 356
EciI	GGCGGA	2 cut(s)	38, 411
Eco57I	CTGAAG	2 cut(s)	62, 84
EcoRI	GAATTC	1 cut(s)	87
FaeI	CATG	4 cut(s)	250, 307, 367, 438
FaiI	YATR	8 cut(s)	208, 248, 255, 305, 312, 360, 365, 436
FatI	CATG	4 cut(s)	246, 303, 363, 434
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	52, 137
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	250, 307, 367, 438
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	296, 343
HpaII	CCGG	2 cut(s)	52, 137
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	86, 103, 124
Hpy188III	TCNNGA	2 cut(s)	268, 412
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	2 cut(s)	60, 69
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	134, 284, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	4 cut(s)	250, 307, 367, 438
HspAI	GCGC	1 cut(s)	113
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	65, 123, 150, 215, 228, 303
LweI	GCATC	2 cut(s)	227, 373
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	4 cut(s)	31, 34, 68, 343
MfeI	CAATTG	1 cut(s)	368
MluCI	AATT	4 cut(s)	87, 92, 216, 368
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	6 cut(s)	42, 45, 118, 193, 359, 392
MreI	CGCCGGCG	1 cut(s)	51
MroNI	GCCGGC	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	433
MspI	CCGG	2 cut(s)	52, 137
MunI	CAATTG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	4 cut(s)	250, 307, 367, 438
NspI	RCATGY	3 cut(s)	250, 367, 438
PaeI	GCATGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PscI	ACATGT	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	1 cut(s)	334
SchI	GAGTC	1 cut(s)	352
SetI	ASST	2 cut(s)	84, 196
SfaNI	GCATC	2 cut(s)	227, 373
SfcI	CTRYAG	1 cut(s)	376
SgrAI	CRCCGGYG	2 cut(s)	51, 136
SmiMI	CAYNNNNRTG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	4 cut(s)	87, 92, 216, 368
SsiI	CCGC	5 cut(s)	12, 49, 396, 444, 459
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	267
TasI	AATT	4 cut(s)	87, 92, 216, 368
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	385
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	3 cut(s)	250, 367, 438
XmiI	GTMKAC	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.