AT1G10770

Invertase pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018750
Physical Location & Seq
Reverse (-)
3591633 .. 3592580
948 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10770.1

Sequence Viewer

Length: 504 bp
ATGGCGGGCCGCGACACATTCCAGCTGCGTTTTGCAGCAGTCGCGGCATCCGCCGCCGTATTGATCTTTCTCATGGCTGGTCAAGTCGCGGAGTCGCGTATGATCAATATCTGCTCTCACACCGCGTATCCATCTTTGTGCCGACCTCTGGTGAAACGTGTCACGAGCCCTAGAAAAGCCACGCACCGAACCATCCAAGCTTTGGAGGCTAAGACGAAACTAGCTCTAGCCGAAACAGCTAGGTTCAAAAACGGTAACCAAGCGGTCAGCACGTGTTACGAGACATTGGGCGACGCGGTTTACAATTTGGCAAGCGCGAGAAAGAGCATAAGGAAACGTGATGTGCCGGCGATGAACACGTATCTAACTGCGGCTGTGTCTGATTACGGTGCATGTGTGGACGGGTTCATTGAAACACAACAGGTTAATGCGATCCAAAATGCAGTGGTTGACTTGAGAAAAATTAGCAGCAATTGCTTGGCGTTGTCTACATTGATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

167

Amino Acids

18.1

Weight (kDa)

9.75

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 36 - 162 2e-16 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10770 AT1G23350 AT1G60760 AT1G70540
prunus_persica Prupe.1G249100_v2.0.a1
rosa_multiflora Rmu_sc0004275.1_g000005
rosa_samantha Rh4BG328900 Rh4CG344200 Rh4DG325600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AccI GTMKAC 1 cut(s) 488
AccII CGCG 7 cut(s) 12, 44, 89, 97, 125, 296, 317
AclWI GGATC 1 cut(s) 427
AcvI CACGTG 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 148, 202
AflIII ACRYGT 3 cut(s) 157, 272, 357
AgsI TTSAA 2 cut(s) 247, 413
AluBI AGCT 4 cut(s) 25, 200, 224, 239
AluI AGCT 4 cut(s) 25, 200, 224, 239
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 427
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 3 cut(s) 25, 35, 468
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 163
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 273
BbvI GCAGC 3 cut(s) 12, 47, 480
BccI CCATC 2 cut(s) 139, 200
BceAI ACGGC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 138
BclI TGATCA 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 4 cut(s) 171, 221, 227, 240
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 7 cut(s) 10, 26, 36, 45, 54, 372, 469
BlsI GCNGC 7 cut(s) 11, 27, 37, 46, 55, 373, 470
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 475
BsaAI YACGTR 2 cut(s) 273, 360
BsaBI GATNNNNATC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 202
Bse118I RCCGGY 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 107
BseGI GGATG 2 cut(s) 47, 192
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 148, 202
BseXI GCAGC 3 cut(s) 12, 47, 480
Bsh1236I CGCG 7 cut(s) 12, 44, 89, 97, 125, 296, 317
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 148, 202
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 63, 102, 432
BspANI GGCC 1 cut(s) 9
BspFNI CGCG 7 cut(s) 12, 44, 89, 97, 125, 296, 317
BspPI GGATC 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssMI GATC 3 cut(s) 63, 102, 432
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 254, 389
BstAPI GCANNNNNTGC 1 cut(s) 474
BstBAI YACGTR 2 cut(s) 273, 360
BstC8I GCNNGC 3 cut(s) 7, 313, 348
BstDEI CTNAG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 254
BstF5I GGATG 2 cut(s) 47, 192
BstFNI CGCG 7 cut(s) 12, 44, 89, 97, 125, 296, 317
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 3 cut(s) 66, 105, 435
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 3 cut(s) 63, 102, 432
BstMWI GCNNNNNNNGC 7 cut(s) 41, 44, 50, 53, 206, 236, 474
BstNSI RCATGY 1 cut(s) 396
BstPI GGTNACC 1 cut(s) 254
BstUI CGCG 7 cut(s) 12, 44, 89, 97, 125, 296, 317
BstV1I GCAGC 3 cut(s) 12, 47, 480
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 47, 192
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 7, 313, 348
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 302
CviAII CATG 2 cut(s) 73, 393
DdeI CTNAG 1 cut(s) 210
DpnI GATC 3 cut(s) 65, 104, 434
DpnII GATC 3 cut(s) 63, 102, 432
EciI GGCGGA 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 170
Eco72I CACGTG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 170
FaeI CATG 2 cut(s) 76, 396
FaiI YATR 4 cut(s) 74, 101, 329, 394
FatI CATG 2 cut(s) 72, 392
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 7 cut(s) 10, 26, 36, 45, 54, 372, 469
FokI GGATG 2 cut(s) 34, 179
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 7 cut(s) 10, 26, 36, 45, 54, 372, 469
FspBI CTAG 4 cut(s) 171, 221, 227, 240
GlaI GCGC 1 cut(s) 316
GluI GCNGC 7 cut(s) 10, 26, 36, 45, 54, 372, 469
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 317
Hin1II CATG 2 cut(s) 76, 396
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 4 cut(s) 301, 400, 451, 489
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 4 cut(s) 301, 400, 451, 489
Hpy99I CGWCG 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 254, 389
HpyCH4IV ACGT 4 cut(s) 157, 272, 337, 359
HpyCH4V TGCA 3 cut(s) 35, 392, 443
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 44, 50, 53, 206, 236, 474
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 4 cut(s) 157, 272, 337, 359
Hsp92II CATG 2 cut(s) 76, 396
HspAI GCGC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 63, 102, 432
LpnPI CCDG 5 cut(s) 35, 63, 134, 360, 407
Lsp1109I GCAGC 3 cut(s) 12, 47, 480
LweI GCATC 1 cut(s) 56
MaeI CTAG 4 cut(s) 171, 221, 227, 240
MaeII ACGT 4 cut(s) 157, 272, 337, 359
MaeIII GTNAC 3 cut(s) 160, 254, 275
MalI GATC 3 cut(s) 65, 104, 434
MboI GATC 3 cut(s) 63, 102, 432
MfeI CAATTG 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 3 cut(s) 304, 462, 472
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 156, 199
MroNI GCCGGC 1 cut(s) 346
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 472
MvnI CGCG 7 cut(s) 12, 44, 89, 97, 125, 296, 317
MwoI GCNNNNNNNGC 7 cut(s) 41, 44, 50, 53, 206, 236, 474
NaeI GCCGGC 1 cut(s) 348
NdeII GATC 3 cut(s) 63, 102, 432
NgoMIV GCCGGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 76, 396
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 396
PdiI GCCGGC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 7 cut(s) 11, 27, 37, 46, 55, 373, 470
PleI GAGTC 1 cut(s) 100
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 2 cut(s) 273, 360
PspCI CACGTG 1 cut(s) 273
PspEI GGTNACC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 7 cut(s) 10, 26, 36, 45, 54, 372, 469
Sau3AI GATC 3 cut(s) 63, 102, 432
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 3 cut(s) 304, 462, 472
SspMI CTAG 4 cut(s) 171, 221, 227, 240
TaaI ACNGT 2 cut(s) 254, 389
TaiI ACGT 4 cut(s) 160, 275, 340, 362
TasI AATT 3 cut(s) 304, 462, 472
TauI GCSGC 4 cut(s) 12, 47, 56, 374
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 25, 35, 468
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 368, 397
TspRI CASTG 1 cut(s) 450
Van91I CCANNNNNTGG 1 cut(s) 202
XceI RCATGY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 4 cut(s) 171, 221, 227, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.