AT1G60760

Invertase pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018750
Physical Location & Seq
Forward (+)
22365799 .. 22366598
800 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60760.1

Sequence Viewer

Length: 492 bp
ATGGCGAGTCGCAACACAATCCAGATGTACCTCACGACTGTTGTCGCAATCGTGATCCTCCTGGCGGCAAGCCAAGCCACGGAAGCTCGTTTCACGAGCCTATGCGCTCAAACCGCATACCCAACCTTGTGTCGACCGCTGGTGAAAGGGCCAAACCCGAGACGAGCCACACACAGCACGATCCGAGCCTTGGAGGCTAAGACGAAATTGGCAATTACAGACTCTGCGAGATTCAAGAGCGGAAATCCAACTGTTGCAATTTGCTATGCGACTCTTGTGGATGCATCCTTCAATCTTAGGAGGGCAAGGACTAGCATTAGGAAAAGAAATGTTATGATGCTAAAAATGTTTTTGACCGCGGCTGTGTCAGATTATGGTGTTTGTGTCAACGGGTTCATAGATTCACATCAAGTCAACACTCTTCAGAACGATGTAGATGAGCTCAGGAAGATGGGAACTAACTGCTTGTTGCTTGCTACATTGATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

163

Amino Acids

17.94

Weight (kDa)

10.11

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 32 - 157 2.9e-08 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10770 AT1G23350 AT1G60760 AT1G70540
prunus_persica Prupe.1G249100_v2.0.a1
rosa_multiflora Rmu_sc0004275.1_g000005
rosa_samantha Rh4BG328900 Rh4CG344200 Rh4DG325600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 133
AccII CGCG 1 cut(s) 359
AciI CCGC 6 cut(s) 65, 114, 137, 240, 357, 359
AclWI GGATC 2 cut(s) 49, 175
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 3 cut(s) 64, 79, 190
AgsI TTSAA 2 cut(s) 235, 292
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 86, 442
AluI AGCT 2 cut(s) 86, 442
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 2 cut(s) 49, 175
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 157
BanII GRGCYC 1 cut(s) 444
BauI CACGAG 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 444
BccI CCATC 1 cut(s) 445
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 2 cut(s) 66, 360
BlsI GCNGC 2 cut(s) 67, 361
Bme1390I CCNGG 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 3 cut(s) 271, 293, 327
BoxI GACNNNNGTC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 78, 189, 357
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 79, 190
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 78, 189, 357
BseGI GGATG 2 cut(s) 284, 286
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 3 cut(s) 64, 79, 190
BseMII CTCAG 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 359
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 157
BslI CCNNNNNNNGG 3 cut(s) 64, 79, 190
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 54, 180
BspACI CCGC 6 cut(s) 65, 114, 137, 240, 357, 359
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 1 cut(s) 359
BspPI GGATC 2 cut(s) 49, 175
BsrBI CCGCTC 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 78, 189, 357
BssMI GATC 2 cut(s) 54, 180
BssSI CACGAG 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 40, 253
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 70, 474
BstDEI CTNAG 3 cut(s) 198, 296, 443
BstDSI CCRYGG 2 cut(s) 78, 357
BstF5I GGATG 2 cut(s) 284, 286
BstFNI CGCG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 57, 183
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 54, 180
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 4 cut(s) 74, 83, 113, 194
BstNI CCWGG 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 359
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 2 cut(s) 78, 357
BtsCI GGATG 2 cut(s) 284, 286
Cac8I GCNNGC 2 cut(s) 70, 474
CaiI CAGNNNCTG 1 cut(s) 224
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 360
Csp6I GTAC 1 cut(s) 28
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 198, 296, 443
DpnI GATC 2 cut(s) 56, 182
DpnII GATC 2 cut(s) 54, 180
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 6 cut(s) 103, 118, 267, 335, 375, 398
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 66, 360
FokI GGATG 2 cut(s) 271, 293
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 66, 360
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 66, 360
HaeIII GGCC 1 cut(s) 151
HhaI GCGC 1 cut(s) 107
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 3 cut(s) 134, 388, 415
HindII GTYRAC 3 cut(s) 134, 388, 415
HinfI GANTC 5 cut(s) 7, 221, 231, 271, 401
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 134, 388, 415
Hpy188I TCNGA 3 cut(s) 185, 370, 426
Hpy188III TCNNGA 6 cut(s) 22, 34, 52, 94, 235, 445
Hpy8I GTNNAC 3 cut(s) 134, 388, 415
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 40, 253
HpyCH4V TGCA 2 cut(s) 257, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 83, 113, 194
HpyF3I CTNAG 3 cut(s) 198, 296, 443
HspAI GCGC 1 cut(s) 105
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 2 cut(s) 54, 180
LpnPI CCDG 5 cut(s) 35, 47, 74, 125, 430
LweI GCATC 3 cut(s) 271, 293, 327
MaeI CTAG 1 cut(s) 312
MalI GATC 2 cut(s) 56, 182
MbiI CCGCTC 1 cut(s) 240
MboI GATC 2 cut(s) 54, 180
MboII GAAGA 2 cut(s) 413, 460
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 3 cut(s) 206, 213, 258
MlyI GAGTC 3 cut(s) 16, 215, 265
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 4 cut(s) 41, 68, 187, 294
Mph1103I ATGCAT 1 cut(s) 286
MspA1I CMGCKG 2 cut(s) 139, 359
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 74, 83, 113, 194
NdeII GATC 2 cut(s) 54, 180
NsiI ATGCAT 1 cut(s) 286
PfeI GAWTC 2 cut(s) 231, 401
PkrI GCNGC 2 cut(s) 67, 361
PleI GAGTC 3 cut(s) 15, 215, 265
PpsI GAGTC 3 cut(s) 15, 215, 265
PshAI GACNNNNGTC 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SacI GAGCTC 1 cut(s) 444
SacII CCGCGG 1 cut(s) 360
SalI GTCGAC 1 cut(s) 132
SatI GCNGC 2 cut(s) 66, 360
Sau3AI GATC 2 cut(s) 54, 180
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 3 cut(s) 16, 215, 265
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 444
SetI ASST 4 cut(s) 33, 88, 128, 444
SfaNI GCATC 3 cut(s) 271, 293, 327
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
Sse9I AATT 3 cut(s) 206, 213, 258
SsiI CCGC 6 cut(s) 65, 114, 137, 240, 357, 359
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 40, 253
TaqI TCGA 1 cut(s) 133
TasI AATT 3 cut(s) 206, 213, 258
TauI GCSGC 2 cut(s) 68, 362
TfiI GAWTC 2 cut(s) 231, 401
TspDTI ATGAA 1 cut(s) 385
TspGWI ACGGA 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.