AT1G70540

Invertase pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018750
Physical Location & Seq
Forward (+)
26593930 .. 26594770
841 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70540.1

Sequence Viewer

Length: 504 bp
ATGTCTACAAATCTCCACCTTGCCACCGCGGTGATCCTCCTCCTCCTGACCGCGAGCCAAAGCGGTGTAGCAATGGCTCAGAGGGTTATGGGAGGCGGACGCGATCCATGCTCCGTGTCAGATTTCAAAGTGTTGTGCAGATCAGTGGTTAAGGGCCAAAAGAATGTTAACGCAGCGACGGAGGTTTCCATAAGAGAGCTGATGAAAAGAACGATCAAGGCCAAAGAAGCCGCCAAGATTAGCCGGAAAAGTGGAGGAGGGCTCAAAACTTGCTACTCAAACTATGATAGTGCACTCGAAAATCTACAAAAGGCGTTGAAAAACATCAAACAAAATGATGGGTTTAGTCTTAACATCAATCTTAGTGCCTCCTTGACGGACTTTGATACGTGCAATGACGCCATGGGTGGTGGTACGGCTTCGAATGTCTTCGCCAAATCCACAAGCACGTTGCATGAAATGGCTGATAATTGCTTGGCTCTCTCTACCCTTGTCAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

167

Amino Acids

17.71

Weight (kDa)

9.3

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 37 - 161 7.4e-15 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10770 AT1G23350 AT1G60760 AT1G70540
prunus_persica Prupe.1G249100_v2.0.a1
rosa_multiflora Rmu_sc0004275.1_g000005
rosa_samantha Rh4BG328900 Rh4CG344200 Rh4DG325600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 3 cut(s) 29, 53, 102
AciI CCGC 6 cut(s) 27, 29, 51, 63, 96, 231
AclWI GGATC 2 cut(s) 28, 98
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 1 cut(s) 415
AgsI TTSAA 2 cut(s) 127, 319
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 295
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 2 cut(s) 28, 98
AoxI GGCC 2 cut(s) 154, 219
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 432
BisI GCNGC 2 cut(s) 174, 231
BlsI GCNGC 2 cut(s) 175, 232
BmgT120I GGNCC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 421
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bpu14I TTCGAA 1 cut(s) 422
BsaAI YACGTR 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 27, 402
Bse3DI GCAATG 2 cut(s) 78, 400
BseDI CCNNGG 2 cut(s) 27, 402
BseMI GCAATG 2 cut(s) 78, 400
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 3 cut(s) 29, 32, 270
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 3 cut(s) 29, 53, 102
BshFI GGCC 2 cut(s) 156, 221
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 244
BsnI GGCC 2 cut(s) 156, 221
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 264, 295
Bsp143I GATC 4 cut(s) 33, 103, 140, 213
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 6 cut(s) 27, 29, 51, 63, 96, 231
BspANI GGCC 2 cut(s) 156, 221
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 3 cut(s) 29, 53, 102
BspPI GGATC 2 cut(s) 28, 98
BspT104I TTCGAA 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 78, 400
BssECI CCNNGG 2 cut(s) 27, 402
BssMI GATC 4 cut(s) 33, 103, 140, 213
BssNI GRCGYC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 78, 362
BstDSI CCRYGG 2 cut(s) 27, 402
BstFNI CGCG 3 cut(s) 29, 53, 102
BstKTI GATC 4 cut(s) 36, 106, 143, 216
BstMBI GATC 4 cut(s) 33, 103, 140, 213
BstMWI GCNNNNNNNGC 2 cut(s) 108, 227
BstSLI GKGCMC 1 cut(s) 295
BstUI CGCG 3 cut(s) 29, 53, 102
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 156, 221
BtgI CCRYGG 2 cut(s) 27, 402
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 154
Cfr42I CCGCGG 1 cut(s) 30
CseI GACGC 2 cut(s) 108, 407
Csp6I GTAC 1 cut(s) 414
CviAII CATG 3 cut(s) 108, 403, 455
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 78, 362
DpnI GATC 4 cut(s) 35, 105, 142, 215
DpnII GATC 4 cut(s) 33, 103, 140, 213
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 3 cut(s) 111, 406, 458
FaiI YATR 6 cut(s) 89, 109, 191, 285, 404, 456
FatI CATG 3 cut(s) 107, 402, 454
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 174, 231
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 174, 231
GluI GCNGC 2 cut(s) 174, 231
HaeIII GGCC 2 cut(s) 156, 221
HapII CCGG 1 cut(s) 244
HgaI GACGC 2 cut(s) 108, 407
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 3 cut(s) 111, 406, 458
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 6, 169, 293
Hpy188I TCNGA 2 cut(s) 81, 121
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 3 cut(s) 6, 169, 293
Hpy99I CGWCG 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 389, 449
HpyCH4V TGCA 4 cut(s) 138, 293, 393, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 227
HpyF3I CTNAG 2 cut(s) 78, 362
HpySE526I ACGT 2 cut(s) 389, 449
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 3 cut(s) 111, 406, 458
KspAI GTTAAC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 4 cut(s) 33, 103, 140, 213
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 59, 257
Lsp1109I GCAGC 1 cut(s) 185
MaeII ACGT 2 cut(s) 389, 449
MalI GATC 4 cut(s) 35, 105, 142, 215
MboI GATC 4 cut(s) 33, 103, 140, 213
MboII GAAGA 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 264, 295
MluCI AATT 1 cut(s) 469
MnlI CCTC 9 cut(s) 47, 50, 53, 75, 86, 175, 248, 251, 379
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 3 cut(s) 150, 168, 351
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 244
MvnI CGCG 3 cut(s) 29, 53, 102
MwoI GCNNNNNNNGC 2 cut(s) 108, 227
NcoI CCATGG 1 cut(s) 402
NdeII GATC 4 cut(s) 33, 103, 140, 213
NlaIII CATG 3 cut(s) 111, 406, 458
NspV TTCGAA 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 428
PkrI GCNGC 2 cut(s) 175, 232
Ppu21I YACGTR 1 cut(s) 390
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 29
SacII CCGCGG 1 cut(s) 30
SaqAI TTAA 3 cut(s) 150, 168, 351
SatI GCNGC 2 cut(s) 174, 231
Sau3AI GATC 4 cut(s) 33, 103, 140, 213
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 2 cut(s) 264, 295
SetI ASST 5 cut(s) 21, 186, 201, 392, 452
Sfr303I CCGCGG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 422
SgrBI CCGCGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 469
SsiI CCGC 6 cut(s) 27, 29, 51, 63, 96, 231
StyI CCWWGG 1 cut(s) 402
TaiI ACGT 2 cut(s) 392, 452
TaqI TCGA 2 cut(s) 297, 422
TasI AATT 1 cut(s) 469
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 150, 168, 351
Tru9I TTAA 3 cut(s) 150, 168, 351
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 218, 471
TspGWI ACGGA 3 cut(s) 103, 194, 392
TspRI CASTG 1 cut(s) 150
VneI GTGCAC 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.