Prupe.1G249100_v2.0.a1

Plant invertase/pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018750
Physical Location & Seq
Reverse (-)
26159090 .. 26159866
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G249100.1

Sequence Viewer

Length: 528 bp
ATGAAAATTCAATTGTTTCATTGGTTTAAAGTAAGATTTGTTATTACAATGGGTGTCACTGTCAACAAGCAGCTCATCTCTTTGTCACTGCTCTTTCTTGCCTTCCTCTCAGGCCAAGCTCATGGACAGGGCTTGGATCTATGTGCCGGAGCTAACTACGCAGCCCTCTGCCACTCGGTTGTGGGAAGAGAGAAAAGCCCATATGTCGCCGCGGAGGCAACTGTCAATCGATTGATTTCAGAGACAAAGCAAGCAAAAAGTTCGGCTGCTAGGCTTCCCCACAAGGACTCTCCAACTTGCACGTACGTGTATGACGAAGCCCTTTATAGCCTCAAGGAGAGCCTGCGGAGTCTCAAGAGTCATGACATAGGCAGCTTCAACGTCAAACTCTCTGCGGTTATGAGCTTCGCCGAAGCATGCAAAGACTCGTTTGAGGAAATGGGGAAGCCATTCCCCATTGCCAAGCAGAATGAACTCATCAAACACATTGCCAGCTATGCTTTGCATATAGCAACATTCATTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

176

Amino Acids

19.31

Weight (kDa)

9.03

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10770 AT1G23350 AT1G60760 AT1G70540
prunus_persica Prupe.1G249100_v2.0.a1
rosa_multiflora Rmu_sc0004275.1_g000005
rosa_samantha Rh4BG328900 Rh4CG344200 Rh4DG325600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 212
AciI CCGC 4 cut(s) 210, 212, 346, 395
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 11, 379
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 6 cut(s) 73, 119, 152, 375, 405, 495
AluI AGCT 6 cut(s) 73, 119, 152, 375, 405, 495
Alw26I GTCTC 2 cut(s) 236, 356
AlwI GGATC 1 cut(s) 144
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 4 cut(s) 70, 161, 266, 372
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 449
BbvI GCAGC 4 cut(s) 82, 173, 253, 384
BcgI CGANNNNNNTGC 2 cut(s) 243, 277
BcoDI GTCTC 2 cut(s) 236, 356
BfaI CTAG 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 5 cut(s) 71, 162, 210, 267, 373
BlsI GCNGC 5 cut(s) 72, 163, 211, 268, 374
BpuEI CTTGAG 2 cut(s) 317, 338
Bsa29I ATCGAT 1 cut(s) 229
BsaAI YACGTR 2 cut(s) 303, 307
BsaJI CCNNGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 456, 486
BseCI ATCGAT 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 210
BseMI GCAATG 2 cut(s) 456, 486
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 4 cut(s) 82, 173, 253, 384
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 229
BsiSI CCGG 1 cut(s) 147
BsiWI CGTACG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 236, 356
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 4 cut(s) 210, 212, 346, 395
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 122
BspDI ATCGAT 1 cut(s) 229
BspFNI CGCG 1 cut(s) 212
BspHI TCATGA 1 cut(s) 361
BspPI GGATC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 456, 486
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 61, 223
Bst6I CTCTTC 1 cut(s) 181
BstBAI YACGTR 2 cut(s) 303, 307
BstC8I GCNNGC 4 cut(s) 252, 344, 418, 493
BstDEI CTNAG 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 236, 356
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 158, 215, 497
BstNSI RCATGY 1 cut(s) 420
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 4 cut(s) 82, 173, 253, 384
BstX2I RGATCY 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 229
BsuRI GGCC 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 57, 86
Cac8I GCNNGC 4 cut(s) 252, 344, 418, 493
CciI TCATGA 1 cut(s) 361
Cfr42I CCGCGG 1 cut(s) 213
ClaI ATCGAT 1 cut(s) 229
Csp6I GTAC 1 cut(s) 304
CviAII CATG 3 cut(s) 122, 362, 417
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
FaeI CATG 3 cut(s) 125, 365, 420
FatI CATG 3 cut(s) 121, 361, 416
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 5 cut(s) 71, 162, 210, 267, 373
Fsp4HI GCNGC 5 cut(s) 71, 162, 210, 267, 373
FspBI CTAG 1 cut(s) 270
GluI GCNGC 5 cut(s) 71, 162, 210, 267, 373
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 147
Hin1II CATG 3 cut(s) 125, 365, 420
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 287, 349, 358, 425
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 355, 362
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 61, 223
HpyCH4IV ACGT 3 cut(s) 302, 306, 381
HpyCH4V TGCA 3 cut(s) 300, 420, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 215, 497
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 3 cut(s) 302, 306, 381
Hsp92II CATG 3 cut(s) 125, 365, 420
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 96, 113, 160, 356, 505
Lsp1109I GCAGC 4 cut(s) 82, 173, 253, 384
MaeI CTAG 1 cut(s) 270
MaeII ACGT 3 cut(s) 302, 306, 381
MaeIII GTNAC 2 cut(s) 55, 84
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 198
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 136
MluCI AATT 2 cut(s) 6, 11
MlyI GAGTC 4 cut(s) 281, 358, 367, 419
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 5 cut(s) 116, 176, 208, 341, 427
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 147
MunI CAATTG 1 cut(s) 11
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 158, 215, 497
NdeI CATATG 1 cut(s) 202
NdeII GATC 1 cut(s) 136
NlaIII CATG 3 cut(s) 125, 365, 420
NmuCI GTSAC 2 cut(s) 55, 84
NspI RCATGY 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 305
PaeI GCATGC 1 cut(s) 420
PagI TCATGA 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 449
Pfl23II CGTACG 1 cut(s) 303
PkrI GCNGC 5 cut(s) 72, 163, 211, 268, 374
PleI GAGTC 4 cut(s) 281, 357, 366, 419
PpsI GAGTC 4 cut(s) 281, 357, 366, 419
Ppu21I YACGTR 2 cut(s) 303, 307
PspLI CGTACG 1 cut(s) 303
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 305
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 71, 162, 210, 267, 373
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 4 cut(s) 281, 358, 367, 419
SetI ASST 9 cut(s) 75, 121, 154, 305, 309, 377, 384, 407, 497
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 332, 353
SmoI CTYRAG 2 cut(s) 332, 353
SphI GCATGC 1 cut(s) 420
Sse9I AATT 2 cut(s) 6, 11
SsiI CCGC 4 cut(s) 210, 212, 346, 395
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 61, 223
TaiI ACGT 3 cut(s) 305, 309, 384
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 6, 11
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 2 cut(s) 64, 93
TseFI GTSAC 2 cut(s) 55, 84
TseI GCWGC 4 cut(s) 70, 161, 266, 372
Tsp45I GTSAC 2 cut(s) 55, 84
TspDTI ATGAA 4 cut(s) 8, 17, 486, 508
TspRI CASTG 2 cut(s) 64, 93
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.