Rh4CG344200

Plant invertase/pectin methylesterase inhibitor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
60377042 .. 60377233
192 bp
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UTR
Exon/CDS
Intron
Rh4CG344200.1

Sequence Viewer

Length: 192 bp
ATGGCCACCGCGTTATTCCATGCATCGAGCGCCGAGCTTTGCGCCGGAGCCGACTACAAAACCCTCTGTCGGTCCATCGGGGGAAGAGCCAAAACCCCATACGCGGTGGCGGAGGCCACCGTCAAGCGACTCACTTCCGAGACCAAGAAAGCAAAAGCGTCCGCCGCTAAGCTCCCCAAAAAGGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.56

Weight (kDa)

9.8

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018750)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 11, 104
AciI CCGC 5 cut(s) 9, 104, 110, 162, 165
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 186
AfiI CCNNNNNNNGG 3 cut(s) 69, 103, 181
AluBI AGCT 2 cut(s) 37, 172
AluI AGCT 2 cut(s) 37, 172
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 2 cut(s) 3, 114
AspLEI GCGC 2 cut(s) 32, 44
AspS9I GGNCC 1 cut(s) 72
AvaII GGWCC 1 cut(s) 72
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 1 cut(s) 165
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 103, 181
BseLI CCNNNNNNNGG 3 cut(s) 69, 103, 181
Bsh1236I CGCG 2 cut(s) 11, 104
BshFI GGCC 2 cut(s) 5, 116
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 3 cut(s) 69, 103, 181
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 2 cut(s) 5, 116
Bso31I GGTCTC 1 cut(s) 134
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 5 cut(s) 9, 104, 110, 162, 165
BspANI GGCC 2 cut(s) 5, 116
BspFNI CGCG 2 cut(s) 11, 104
BspLI GGNNCC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 168
BstFNI CGCG 2 cut(s) 11, 104
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 44
BstMAI GTCTC 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 29, 164
BstUI CGCG 2 cut(s) 11, 104
BsuRI GGCC 2 cut(s) 5, 116
CfoI GCGC 2 cut(s) 32, 44
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 1 cut(s) 147
CviAII CATG 1 cut(s) 20
CviJI RGCY 6 cut(s) 5, 37, 50, 89, 116, 172
CviKI_1 RGCY 6 cut(s) 5, 37, 50, 89, 116, 172
DdeI CTNAG 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 2 cut(s) 125, 151
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 25
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 100
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
GlaI GCGC 2 cut(s) 31, 43
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 5, 116
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 147
HhaI GCGC 2 cut(s) 32, 44
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 2 cut(s) 30, 42
HinP1I GCGC 2 cut(s) 30, 42
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 164
HpyF3I CTNAG 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 2 cut(s) 30, 42
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 47, 177
LpnPI CCDG 1 cut(s) 58
LweI GCATC 1 cut(s) 32
MboII GAAGA 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 2 cut(s) 74, 106
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 25
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 45
MvnI CGCG 2 cut(s) 11, 104
MwoI GCNNNNNNNGC 2 cut(s) 29, 164
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 123
SetI ASST 2 cut(s) 39, 174
SfaNI GCATC 1 cut(s) 32
SinI GGWCC 1 cut(s) 72
SsiI CCGC 5 cut(s) 9, 104, 110, 162, 165
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 26
TaqII GACCGA 1 cut(s) 60
TauI GCSGC 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.