Rmu_sc0004275.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004275.1
OG0018750
Physical Location & Seq
Reverse (-)
11534 .. 11920
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004275.1_g000005.1.cds

Sequence Viewer

Length: 387 bp
atggccacatcgttattccatgtgtcgagcgccgagctttgtgccggaggcgactacaaaaccctatgtcggtccatcgggggaagagccaaaaccccatacgccgtggcggaggccaccgtcaagcgactcacttccgagaccaagaaagcaaaagcttcgagcgccgagctttgtgccggagccgactacaaaaccctctgtcggtccatcgggggaagagccaaaaccccatacgccgcggcggaggccaccgtcaagcgactcacttccgagaccaagaaagcaaaagcgtccaccgctaagctccccaaaaggacgcctgagtttgcacgtctctgtatagagacgccattaccaacctggagactagcgtggaagatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.74

Weight (kDa)

9.91

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10770 AT1G23350 AT1G60760 AT1G70540
prunus_persica Prupe.1G249100_v2.0.a1
rosa_multiflora Rmu_sc0004275.1_g000005
rosa_samantha Rh4BG328900 Rh4CG344200 Rh4DG325600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 242
AciI CCGC 5 cut(s) 110, 240, 242, 245, 300
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 320, 350
AfiI CCNNNNNNNGG 2 cut(s) 69, 204
AjiI CACGTC 1 cut(s) 335
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 4 cut(s) 37, 158, 172, 307
AluI AGCT 4 cut(s) 37, 158, 172, 307
Alw26I GTCTC 5 cut(s) 134, 269, 341, 341, 361
AoxI GGCC 3 cut(s) 3, 114, 249
AspLEI GCGC 2 cut(s) 32, 167
AspS9I GGNCC 2 cut(s) 72, 207
AvaII GGWCC 2 cut(s) 72, 207
BalI TGGCCA 1 cut(s) 5
BccI CCATC 2 cut(s) 83, 218
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 6 cut(s) 23, 57, 141, 158, 175, 192
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 5 cut(s) 134, 269, 341, 341, 361
BfaI CTAG 1 cut(s) 371
BfoI RGCGCY 2 cut(s) 33, 168
BglII AGATCT 1 cut(s) 381
BisI GCNGC 2 cut(s) 240, 243
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 2 cut(s) 241, 244
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 2 cut(s) 72, 207
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 72, 207
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 303
BsaHI GRCGYC 2 cut(s) 320, 350
BsaI GGTCTC 2 cut(s) 134, 269
BsaJI CCNNGG 2 cut(s) 105, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 204
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 105, 240
BseLI CCNNNNNNNGG 2 cut(s) 69, 204
BseMII CTCAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 3 cut(s) 5, 116, 251
BsiSI CCGG 2 cut(s) 45, 180
BslI CCNNNNNNNGG 2 cut(s) 69, 204
BsmAI GTCTC 5 cut(s) 134, 269, 341, 341, 361
BsmBI CGTCTC 2 cut(s) 341, 341
BsnI GGCC 3 cut(s) 5, 116, 251
Bso31I GGTCTC 2 cut(s) 134, 269
Bsp143I GATC 1 cut(s) 381
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 5 cut(s) 110, 240, 242, 245, 300
BspANI GGCC 3 cut(s) 5, 116, 251
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 184
BspQI GCTCTTC 2 cut(s) 79, 214
BspTNI GGTCTC 2 cut(s) 134, 269
BssECI CCNNGG 2 cut(s) 105, 240
BssMI GATC 1 cut(s) 381
BssNI GRCGYC 2 cut(s) 320, 350
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 121, 256
Bst6I CTCTTC 2 cut(s) 79, 214
BstACI GRCGYC 2 cut(s) 320, 350
BstDEI CTNAG 2 cut(s) 303, 324
BstDSI CCRYGG 2 cut(s) 105, 240
BstFNI CGCG 1 cut(s) 242
BstH2I RGCGCY 2 cut(s) 33, 168
BstHHI GCGC 2 cut(s) 32, 167
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 5 cut(s) 134, 269, 341, 341, 361
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 3 cut(s) 164, 248, 299
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 3 cut(s) 5, 116, 251
BtgI CCRYGG 2 cut(s) 105, 240
BtrI CACGTC 1 cut(s) 335
CfoI GCGC 2 cut(s) 32, 167
Cfr13I GGNCC 2 cut(s) 72, 207
Cfr42I CCGCGG 1 cut(s) 243
CseI GACGC 3 cut(s) 282, 328, 358
CviAII CATG 1 cut(s) 20
DdeI CTNAG 2 cut(s) 303, 324
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 79, 214
EarI CTCTTC 2 cut(s) 79, 214
EciI GGCGGA 2 cut(s) 125, 260
Eco31I GGTCTC 2 cut(s) 134, 269
Eco47I GGWCC 2 cut(s) 72, 207
EcoRII CCWGG 1 cut(s) 362
Esp3I CGTCTC 2 cut(s) 341, 341
FaeI CATG 1 cut(s) 23
FaiI YATR 5 cut(s) 21, 67, 100, 235, 344
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 240, 243
Fsp4HI GCNGC 2 cut(s) 240, 243
FspBI CTAG 1 cut(s) 371
GlaI GCGC 2 cut(s) 31, 166
GluI GCNGC 2 cut(s) 240, 243
GsuI CTGGAG 1 cut(s) 385
HaeII RGCGCY 2 cut(s) 33, 168
HaeIII GGCC 3 cut(s) 5, 116, 251
HapII CCGG 2 cut(s) 45, 180
HgaI GACGC 3 cut(s) 282, 328, 358
HhaI GCGC 2 cut(s) 32, 167
Hin1I GRCGYC 2 cut(s) 320, 350
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 2 cut(s) 30, 165
HinP1I GCGC 2 cut(s) 30, 165
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 2 cut(s) 129, 264
HpaII CCGG 2 cut(s) 45, 180
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 139, 274
Hpy8I GTNNAC 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 121, 256
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 248, 299
HpyF3I CTNAG 2 cut(s) 303, 324
HpySE526I ACGT 1 cut(s) 334
Hsp92I GRCGYC 2 cut(s) 320, 350
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 2 cut(s) 30, 165
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 1 cut(s) 381
LguI GCTCTTC 2 cut(s) 79, 214
LmnI GCTCC 2 cut(s) 182, 312
LpnPI CCDG 5 cut(s) 58, 193, 336, 349, 376
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 334
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 2 cut(s) 96, 231
MflI RGATCY 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 123, 258
MnlI CCTC 4 cut(s) 41, 106, 209, 241
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 45, 180
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 164, 248, 299
NdeII GATC 1 cut(s) 381
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 2 cut(s) 58, 193
PciSI GCTCTTC 2 cut(s) 79, 214
PkrI GCNGC 2 cut(s) 241, 244
PleI GAGTC 2 cut(s) 123, 258
PpsI GAGTC 2 cut(s) 123, 258
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 72, 207
PsuI RGATCY 1 cut(s) 381
SacII CCGCGG 1 cut(s) 243
SapI GCTCTTC 2 cut(s) 79, 214
SatI GCNGC 2 cut(s) 240, 243
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 2 cut(s) 72, 207
SchI GAGTC 2 cut(s) 123, 258
ScrFI CCNGG 1 cut(s) 364
SetI ASST 6 cut(s) 39, 160, 174, 309, 337, 365
Sfr303I CCGCGG 1 cut(s) 243
SgrBI CCGCGG 1 cut(s) 243
SinI GGWCC 2 cut(s) 72, 207
SsiI CCGC 5 cut(s) 110, 240, 242, 245, 300
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 121, 256
TaiI ACGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 26, 161
TaqII GACCGA 2 cut(s) 60, 195
TauI GCSGC 2 cut(s) 242, 245
VpaK11BI GGWCC 2 cut(s) 72, 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.