AT1G11530

C-terminal cysteine residue is changed to A serine 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014533
Physical Location & Seq
Forward (+)
3874396 .. 3875484
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11530.1

Sequence Viewer

Length: 357 bp
ATGGCAAGAGTTGTTAAAATCGATTCTGCAGAGTCATGGAATTTCTATGTGAGTCAAGCCAAGAATCAGAATTGTCCCATTGTGGCTCATTTCACTGCATTATGGTGTATTCCTTCTGTGTTTATGAACTCCTTCTTCGAAGAGCTTGCGTTTAACTATAAGGATGCTCTGTTTCTAATAGTTGATGTTGATGAAGTTAAGGAAGTGGCAAGTCAACTAGAGGTAAAGGCGATGCCAACTTTCTTGTTCTTGAAGGATGGTAATGCGATGGACAAACTCGTGGGCGCAAACCCTGATGAGATTAAGAAACGGGTCGATGGTTTCGTTCAGTCCTCACGTGTTGTTCATATTGCTTAA

Protein Analysis

118

Amino Acids

13.33

Weight (kDa)

5.28

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 8 - 105 3.6e-18 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11530
fragaria_vesca FvH4_3g02911
malus_domestica MD05G1336400.v1.1 MD10G1311900.v1.1
prunus_persica Prupe.4G029100_v2.0.a1
pyrus_communis pycom05g30790 pycom10g26320
rosa_chinensis RchiOBHm_Chr5g0004481
rosa_laevigata RLG00000031232
rosa_multiflora Rmu_sc0000485.1_g000001
rosa_roxburghii Rroxscaffold_1G00071040
rosa_rugosa Rorug04G0412100
rosa_samantha Rh5AG039700 Rh5BG038700 Rh5CG042800 Rh5DG038500
rosa_wichuraiana Rw5G003790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 40
AcvI CACGTG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 287
AsuII TTCGAA 1 cut(s) 138
BauI CACGAG 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 338
BccI CCATC 3 cut(s) 251, 262, 311
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 27
BmsI GCATC 2 cut(s) 154, 222
Bpu14I TTCGAA 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 338
BseCI ATCGAT 1 cut(s) 21
BseGI GGATG 2 cut(s) 169, 262
BshVI ATCGAT 1 cut(s) 21
BslFI GGGAC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 138
BspDI ATCGAT 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 138
BssSI CACGAG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 2 cut(s) 169, 262
BstHHI GCGC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtgZI GCGATG 2 cut(s) 245, 281
BtsCI GGATG 2 cut(s) 169, 262
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 1 cut(s) 36
CviJI RGCY 3 cut(s) 59, 86, 145
CviKI_1 RGCY 3 cut(s) 59, 86, 145
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco72I CACGTG 1 cut(s) 338
FaeI CATG 1 cut(s) 39
FaiI YATR 6 cut(s) 37, 48, 103, 125, 159, 348
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 35
FokI GGATG 2 cut(s) 176, 269
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 287
Hin1II CATG 1 cut(s) 39
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 4 cut(s) 23, 32, 52, 64
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 123, 142, 247
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 29, 98
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 1 cut(s) 39
HspAI GCGC 1 cut(s) 285
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 1 cut(s) 306
LweI GCATC 2 cut(s) 154, 222
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 337
MboII GAAGA 2 cut(s) 127, 152
MluCI AATT 2 cut(s) 40, 70
MlyI GAGTC 2 cut(s) 41, 61
MnlI CCTC 2 cut(s) 214, 343
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 5 cut(s) 15, 153, 198, 303, 355
MslI CAYNNNNRTG 1 cut(s) 103
NlaIII CATG 1 cut(s) 39
NspV TTCGAA 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 23, 64
PleI GAGTC 2 cut(s) 40, 60
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
PpsI GAGTC 2 cut(s) 40, 60
Ppu21I YACGTR 1 cut(s) 338
PspCI CACGTG 1 cut(s) 338
PstI CTGCAG 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 5 cut(s) 15, 153, 198, 303, 355
SchI GAGTC 2 cut(s) 41, 61
SetI ASST 3 cut(s) 147, 225, 340
SfaNI GCATC 2 cut(s) 154, 222
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 103
Sse9I AATT 2 cut(s) 40, 70
SspMI CTAG 1 cut(s) 218
TaiI ACGT 1 cut(s) 340
TaqI TCGA 3 cut(s) 21, 138, 315
TasI AATT 2 cut(s) 40, 70
TfiI GAWTC 2 cut(s) 23, 64
Tru1I TTAA 5 cut(s) 15, 153, 198, 303, 355
Tru9I TTAA 5 cut(s) 15, 153, 198, 303, 355
TscAI CASTG 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 140, 207, 335
TspRI CASTG 1 cut(s) 100
XapI RAATTY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.