Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014533

Physical Location & Seq

Genomic Coordinates Reverse (-)

1553281 .. 1554668

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02911.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAGGTCGAGTAGATGTTGAGCAGGTGTACAAGTCTATGGTTGTTAAGGTTGATTCTTTGGCGACTTGGGACTTGTCTGTAACTCAAGCCACAACCCATGGCAGCCCTATTGTTGTGCACTTCACTGCTTCATGGTGTATGCCTTCTGTGGCTATGAACCCACTCTTTGAAGAATTGGCCTCAAGCTATCCAGATGTTTTGTTTCTCGCTGTTGATGTGGATGAAGTTAAGGAGGTGGCGACTCGGCTTGACATAAAGGCTATGCCAACTTTTTTGGTGATGAAGGAAGGTAAACAGATTGACAAAGTTGTTGGTGCCAATCCTGAAGAGATAAGGAAAAGGATCGATGGACATGTTCAGTCCATACGTATGTGTGTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:0140096 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

129

Amino Acids

14.22

Weight (kDa)

5.11

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	22 - 116	1.9e-21	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11530
fragaria_vesca	FvH4_3g02911
malus_domestica	MD05G1336400.v1.1 MD10G1311900.v1.1
prunus_persica	Prupe.4G029100_v2.0.a1
pyrus_communis	pycom05g30790 pycom10g26320
rosa_chinensis	RchiOBHm_Chr5g0004481
rosa_laevigata	RLG00000031232
rosa_multiflora	Rmu_sc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071040
rosa_rugosa	Rorug04G0412100
rosa_samantha	Rh5AG039700 Rh5BG038700 Rh5CG042800 Rh5DG038500
rosa_wichuraiana	Rw5G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
Alw21I	GWGCWC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	180
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	319
BpuEI	CTTGAG	2 cut(s)	72, 169
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	371
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	123
BstSNI	TACGTA	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	182
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	101, 135, 356
CviJI	RGCY	7 cut(s)	92, 108, 155, 182, 189, 250, 263
CviKI_1	RGCY	7 cut(s)	92, 108, 155, 182, 189, 250, 263
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco105I	TACGTA	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	104, 138, 359
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	100, 134, 355
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	104, 138, 359
HinfI	GANTC	2 cut(s)	56, 244
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	31, 121, 296
Hpy188III	TCNNGA	2 cut(s)	194, 326
Hpy8I	GTNNAC	3 cut(s)	31, 121, 296
HpyAV	CCTTC	3 cut(s)	156, 280, 284
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	121, 383
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	104, 138, 359
Kzo9I	GATC	1 cut(s)	345
LpnPI	CCDG	3 cut(s)	11, 207, 339
Lsp1109I	GCAGC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	2 cut(s)	185, 341
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	2 cut(s)	193, 229
MseI	TTAA	2 cut(s)	48, 231
MslI	CAYNNNNRTG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	104, 138, 359
NlaIV	GGNNCC	1 cut(s)	319
NmeAIII	GCCGAG	1 cut(s)	226
NspI	RCATGY	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	371
PscI	ACATGT	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	48, 231
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	10, 30, 54, 191, 240, 295, 373
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	87, 184
SmoI	CTYRAG	2 cut(s)	87, 184
SnaBI	TACGTA	1 cut(s)	371
Sse9I	AATT	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	10, 348
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	48, 231
Tru9I	TTAA	2 cut(s)	48, 231
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	4 cut(s)	123, 173, 240, 299
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.