Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3794079 .. 3795137

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAGTTCAAGTAGATGAAGAGCCGGTGCACAAGTCTAGGGTTGTAAAGGTTGATTCTTTGGAGACTTGGGACTTGTCTGTAACTGAAGCCACTAACCAAGGCAGCCCTATTGTTGTTCACTTTACTGCTTCATGGTGTATACCTTCTGTGGTTATGAACCCCTTCTTTGAGGAATTGGCCTCAAGCTATCCAGATGTTCAGTTTCTCACAGTTGATGTTGATGAAGTTCAGGAGGTGGCGACTCGGCTTGACATAAAGGCTATGCCGACTTTTTTGGTGATGAAGGAAGGTGCACAGGTTGACAAGGTGGTGGGTGCCAATCCTGAAGAGATAAGGAAAAGGATTGATGGTTCCGTTCAGTCCATACGTATATCTCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:0140096 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

128

Amino Acids

14.25

Weight (kDa)

4.5

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	22 - 116	3.5e-21	Thioredoxin
Thioredoxin_9	PF14595	39 - 114	5.4e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11530
fragaria_vesca	FvH4_3g02911
malus_domestica	MD05G1336400.v1.1 MD10G1311900.v1.1
prunus_persica	Prupe.4G029100_v2.0.a1
pyrus_communis	pycom05g30790 pycom10g26320
rosa_chinensis	RchiOBHm_Chr5g0004481
rosa_laevigata	RLG00000031232
rosa_multiflora	Rmu_sc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071040
rosa_rugosa	Rorug04G0412100
rosa_samantha	Rh5AG039700 Rh5BG038700 Rh5CG042800 Rh5DG038500
rosa_wichuraiana	Rw5G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	142
AcuI	CTGAAG	2 cut(s)	108, 348
AgsI	TTSAA	1 cut(s)	11
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
Alw21I	GWGCWC	2 cut(s)	33, 298
Alw26I	GTCTC	1 cut(s)	59
Alw44I	GTGCAC	2 cut(s)	29, 294
AoxI	GGCC	1 cut(s)	180
ApaLI	GTGCAC	2 cut(s)	29, 294
ApeKI	GCWGC	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	2 cut(s)	33, 298
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	33, 298
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	319, 355
BpuEI	CTTGAG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	100
BseSI	GKGCMC	2 cut(s)	33, 298
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	33, 298
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	33, 298
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	319, 355
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	100
BssNAI	GTATAC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	15, 324
BstBAI	YACGTR	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	59
BstSLI	GKGCMC	2 cut(s)	33, 298
BstSNI	TACGTA	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	117
BstZ17I	GTATAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	25
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	7 cut(s)	25, 92, 108, 182, 189, 250, 263
CviKI_1	RGCY	7 cut(s)	25, 92, 108, 182, 189, 250, 263
Eam1104I	CTCTTC	2 cut(s)	15, 324
EarI	CTCTTC	2 cut(s)	15, 324
Eco105I	TACGTA	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	108, 348
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	138
FaiI	YATR	8 cut(s)	136, 143, 158, 257, 266, 368, 374, 385
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	56, 244
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	5 cut(s)	31, 121, 143, 296, 304
Hpy188III	TCNNGA	3 cut(s)	194, 233, 326
Hpy8I	GTNNAC	5 cut(s)	31, 121, 143, 296, 304
HpyAV	CCTTC	4 cut(s)	156, 175, 280, 284
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	31, 296, 383
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	138
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	39, 207, 218, 284, 339
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	32, 341
MhlI	GDGCHC	2 cut(s)	33, 298
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	166, 193, 229
MroXI	GAANNNNTTC	1 cut(s)	164
MspI	CCGG	1 cut(s)	26
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	319, 355
NmeAIII	GCCGAG	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	319, 355
SapI	GCTCTTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	33, 298
SetI	ASST	8 cut(s)	54, 148, 191, 240, 295, 303, 312, 373
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SnaBI	TACGTA	1 cut(s)	371
Sse9I	AATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	373
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	5 cut(s)	33, 123, 173, 240, 299
TspGWI	ACGGA	1 cut(s)	346
VneI	GTGCAC	2 cut(s)	29, 294
XmiI	GTMKAC	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.