Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014533

Physical Location & Seq

Genomic Coordinates Reverse (-)

1355794 .. 1357268

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATAGTCAAGTACAGGAAGCGCAGCCCATAAAGTCCAGAGTCATGAAGGTTGATTCTGTGGAGACTTGGGACTTGTATGTAACCCAAGCCACCAACCAAGGCTGCCCTATTGTTGCACACTTTACTGCTTCATGGTGCATGCCTTCGGTGGCTATGAACCCATTCTTTGAGGAATTGGCTTCAAGCTATTCGGATGTTCTGTTTCTCGCGGTTGATGTGGATGAGGTTAAGGAGGTAGCGACTCGACTGGAGATAAAGGCTATGCCAACTTTTTTGCTGATGAGGGAAGGTGCACTGGTTGACAAGCTTGTGGGTGCCAATCCTGAAGAGATAAGGAAATGGATCGAGGGTTTTGTTCAGTCCATACGTGTTTCTGTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:0140096 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

129

Amino Acids

14.33

Weight (kDa)

4.61

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11530
fragaria_vesca	FvH4_3g02911
malus_domestica	MD05G1336400.v1.1 MD10G1311900.v1.1
prunus_persica	Prupe.4G029100_v2.0.a1
pyrus_communis	pycom05g30790 pycom10g26320
rosa_chinensis	RchiOBHm_Chr5g0004481
rosa_laevigata	RLG00000031232
rosa_multiflora	Rmu_sc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071040
rosa_rugosa	Rorug04G0412100
rosa_samantha	Rh5AG039700 Rh5BG038700 Rh5CG042800 Rh5DG038500
rosa_wichuraiana	Rw5G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	1 cut(s)	212
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	2 cut(s)	189, 310
AluI	AGCT	2 cut(s)	189, 310
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	25, 105
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	37, 92
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	26, 106
BlsI	GCNGC	2 cut(s)	27, 107
BmiI	GGNNCC	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	255, 303
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	202, 229
BseNI	ACTGG	2 cut(s)	255, 303
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	37, 92
Bsh1236I	CGCG	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	255, 303
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	202, 229
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	37, 92
BtsCI	GGATG	2 cut(s)	202, 229
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	3 cut(s)	46, 135, 142
CviJI	RGCY	8 cut(s)	28, 92, 105, 155, 182, 189, 263, 310
CviKI_1	RGCY	8 cut(s)	28, 92, 105, 155, 182, 189, 263, 310
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	49, 138, 145
FaiI	YATR	8 cut(s)	32, 47, 81, 136, 143, 158, 266, 368
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	45, 134, 141
Fnu4HI	GCNGC	2 cut(s)	26, 106
FokI	GGATG	2 cut(s)	209, 236
Fsp4HI	GCNGC	2 cut(s)	26, 106
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	26, 106
GsuI	CTGGAG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	49, 138, 145
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	3 cut(s)	42, 56, 244
Hpy166II	GTNNAC	2 cut(s)	296, 304
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	39, 46, 326
Hpy8I	GTNNAC	2 cut(s)	296, 304
HpyAV	CCTTC	3 cut(s)	43, 156, 284
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	119, 141, 296
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	49, 138, 145
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	345
LpnPI	CCDG	5 cut(s)	2, 52, 236, 284, 339
Lsp1109I	GCAGC	2 cut(s)	37, 92
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	51, 238
MnlI	CCTC	5 cut(s)	166, 220, 229, 279, 343
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	231
MvnI	CGCG	1 cut(s)	212
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	49, 138, 145
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	27, 107
PleI	GAGTC	2 cut(s)	50, 238
PpsI	GAGTC	2 cut(s)	50, 238
Ppu21I	YACGTR	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	26, 106
Sau3AI	GATC	1 cut(s)	345
SchI	GAGTC	2 cut(s)	51, 238
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	7 cut(s)	54, 191, 231, 240, 295, 312, 373
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	247, 348
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	2 cut(s)	25, 105
TspDTI	ATGAA	3 cut(s)	62, 123, 173
TspRI	CASTG	1 cut(s)	303
VneI	GTGCAC	1 cut(s)	294
XceI	RCATGY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.