MD05G1336400.v1.1

Thioredoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014533
Physical Location & Seq
Forward (+)
45853757 .. 45855286
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1336400.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGCAAGTCAACTACATGAAGAGCAGCAGATCACTAGGCCCAAAGCCATAAAAGTCGACTCTGTGGAGACTTGGGACTTGTATGTTTCCCAAGCCTCCAACCAAGGCTGCCCTATTATTGCACATTTCACTGCTTCGTGGTGCATGCCTTCGGTGGTTATGAACTCATTCTTCGAGGAAATTGCCTCAGATTATTCGGATGTTCTGTTTCTCACCGTTGATGTCGACGAGGTTAAGGAGGTAGCGACTCGACTGGAGATAATGGCGATGCCAACGTTTTTGCTGATGAGGGAAGGTGCAACGGTTGAGAAGCTCGTGGGCGCCAATCCGGAAGAGATAAGGAAAAGGATCGAGGGTTTCGTTCAGTCCATACGTGTGGACGTTGCATAG

Protein Analysis

130

Amino Acids

14.53

Weight (kDa)

4.59

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 21 - 117 1.8e-18 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014533)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11530
fragaria_vesca FvH4_3g02911
malus_domestica MD05G1336400.v1.1 MD10G1311900.v1.1
prunus_persica Prupe.4G029100_v2.0.a1
pyrus_communis pycom05g30790 pycom10g26320
rosa_chinensis RchiOBHm_Chr5g0004481
rosa_laevigata RLG00000031232
rosa_multiflora Rmu_sc0000485.1_g000001
rosa_roxburghii Rroxscaffold_1G00071040
rosa_rugosa Rorug04G0412100
rosa_samantha Rh5AG039700 Rh5BG038700 Rh5CG042800 Rh5DG038500
rosa_wichuraiana Rw5G003790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 2 cut(s) 57, 225
AccIII TCCGGA 1 cut(s) 328
AclI AACGTT 1 cut(s) 275
AclWI GGATC 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 373
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 356
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 25, 108
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 205
BanI GGYRCC 1 cut(s) 320
BauI CACGAG 1 cut(s) 314
BbvI GCAGC 2 cut(s) 37, 95
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 2 cut(s) 26, 109
BlsI GCNGC 2 cut(s) 27, 110
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 37, 95
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 2 cut(s) 30, 348
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 200
BspEI TCCGGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 356
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 30, 348
BssNI GRCGYC 1 cut(s) 321
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 217, 304
Bst6I CTCTTC 2 cut(s) 15, 327
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 2 cut(s) 33, 351
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 30, 348
BstNSI RCATGY 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 37, 95
BstXI CCANNNNNNTGG 1 cut(s) 376
BsuRI GGCC 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 2 cut(s) 17, 145
CviJI RGCY 5 cut(s) 40, 47, 95, 108, 313
CviKI_1 RGCY 5 cut(s) 40, 47, 95, 108, 313
DdeI CTNAG 1 cut(s) 187
DinI GGCGCC 1 cut(s) 322
DpnI GATC 2 cut(s) 32, 350
DpnII GATC 2 cut(s) 30, 348
Eam1104I CTCTTC 2 cut(s) 15, 327
EarI CTCTTC 2 cut(s) 15, 327
Eco130I CCWWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 20, 148
FaiI YATR 7 cut(s) 18, 50, 84, 146, 161, 371, 388
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 16, 144
FblI GTMKAC 2 cut(s) 57, 225
Fnu4HI GCNGC 2 cut(s) 26, 109
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 26, 109
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 26, 109
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 329
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 2 cut(s) 20, 148
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 3 cut(s) 11, 58, 226
HindII GTYRAC 3 cut(s) 11, 58, 226
HinfI GANTC 2 cut(s) 59, 247
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 4 cut(s) 11, 58, 226, 379
Hpy188I TCNGA 2 cut(s) 190, 199
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 4 cut(s) 11, 58, 226, 379
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 159, 287
HpyCH4III ACNGT 2 cut(s) 217, 304
HpyCH4IV ACGT 3 cut(s) 275, 373, 381
HpyCH4V TGCA 4 cut(s) 122, 144, 299, 386
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 3 cut(s) 275, 373, 381
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 2 cut(s) 20, 148
HspAI GCGC 1 cut(s) 321
KasI GGCGCC 1 cut(s) 320
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 2 cut(s) 30, 348
LguI GCTCTTC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 239, 342
Lsp1109I GCAGC 2 cut(s) 37, 95
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 36
MaeII ACGT 3 cut(s) 275, 373, 381
MalI GATC 2 cut(s) 32, 350
MboI GATC 2 cut(s) 30, 348
MboII GAAGA 3 cut(s) 32, 163, 344
MluCI AATT 1 cut(s) 180
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 2 cut(s) 53, 241
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 7 cut(s) 106, 169, 196, 223, 232, 282, 346
MroI TCCGGA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 374
MspI CCGG 1 cut(s) 329
NarI GGCGCC 1 cut(s) 321
NdeII GATC 2 cut(s) 30, 348
NlaIII CATG 2 cut(s) 20, 148
NlaIV GGNNCC 1 cut(s) 322
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 27, 110
PleI GAGTC 2 cut(s) 53, 241
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 2 cut(s) 53, 241
Ppu21I YACGTR 1 cut(s) 374
Psp1406I AACGTT 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 374
SalI GTCGAC 2 cut(s) 56, 224
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 26, 109
Sau3AI GATC 2 cut(s) 30, 348
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 2 cut(s) 53, 241
SetI ASST 7 cut(s) 234, 243, 278, 298, 315, 376, 384
SfaNI GCATC 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 374
SphI GCATGC 1 cut(s) 148
Sse9I AATT 1 cut(s) 180
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 217, 304
TaiI ACGT 3 cut(s) 278, 376, 384
TaqI TCGA 5 cut(s) 57, 174, 225, 250, 351
TasI AATT 1 cut(s) 180
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 25, 108
TspDTI ATGAA 2 cut(s) 33, 176
TspRI CASTG 1 cut(s) 136
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 2 cut(s) 57, 225
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.