Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014533

Physical Location & Seq

Genomic Coordinates Reverse (-)

3214215 .. 3215301

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAGTTCAAGTAGATGAAGAGCCGGTGCACAAGTCTAGGGTTGTAAAGGTTGATTCTTTGGAGGCTTGGGACTTGTCTGTAACTGAAGCCACTAACCAAGGCAGCCCTATTGTTGTGCACTTTACTGCTTCCTGGTGTATGCCTTCTGTGGCTATGAACTCTTTCTTTGAAGAACTGGCCTCAAGCTATCCAGATGTTCAGTTTCTTACTGTTGATGTTGATGAAGTTCAGGAGGTGGCGACTCGGCTTGACATAAAGGCTATGCCGACTTTTTTGGTGATAAAGGAAGGTGCACAGGTTGACAAGGTTGTGGGTGCCAATCCTGAAGAGATAAGGAAAAGGATTGATGGTTCCGTTCAGTCCATACGTATATCTCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0016853 GO:0016860 GO:0016864 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:0140096 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

129

Amino Acids

14.18

Weight (kDa)

4.5

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	22 - 116	1.2e-20	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11530
fragaria_vesca	FvH4_3g02911
malus_domestica	MD05G1336400.v1.1 MD10G1311900.v1.1
prunus_persica	Prupe.4G029100_v2.0.a1
pyrus_communis	pycom05g30790 pycom10g26320
rosa_chinensis	RchiOBHm_Chr5g0004481
rosa_laevigata	RLG00000031232
rosa_multiflora	Rmu_sc0000485.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071040
rosa_rugosa	Rorug04G0412100
rosa_samantha	Rh5AG039700 Rh5BG038700 Rh5CG042800 Rh5DG038500
rosa_wichuraiana	Rw5G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	108, 348
AgsI	TTSAA	2 cut(s)	11, 173
AjnI	CCWGG	1 cut(s)	134
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
Alw21I	GWGCWC	3 cut(s)	33, 123, 298
Alw44I	GTGCAC	3 cut(s)	29, 119, 294
AoxI	GGCC	1 cut(s)	180
ApaLI	GTGCAC	3 cut(s)	29, 119, 294
ApeKI	GCWGC	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	3 cut(s)	33, 123, 298
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	3 cut(s)	33, 123, 298
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	136
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	319, 355
BmrFI	CCNGG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	183
BseSI	GKGCMC	3 cut(s)	33, 123, 298
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	3 cut(s)	33, 123, 298
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	33, 123, 298
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	319, 355
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	15, 324
BstBAI	YACGTR	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	3 cut(s)	33, 123, 298
BstSNI	TACGTA	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	25
CviJI	RGCY	9 cut(s)	25, 68, 92, 108, 155, 182, 189, 250, 263
CviKI_1	RGCY	9 cut(s)	25, 68, 92, 108, 155, 182, 189, 250, 263
Eam1104I	CTCTTC	2 cut(s)	15, 324
EarI	CTCTTC	2 cut(s)	15, 324
Eco105I	TACGTA	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	108, 348
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaiI	YATR	7 cut(s)	143, 158, 257, 266, 368, 374, 385
FaqI	GGGAC	1 cut(s)	86
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	56, 244
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	4 cut(s)	31, 121, 296, 304
Hpy188III	TCNNGA	3 cut(s)	194, 233, 326
Hpy8I	GTNNAC	4 cut(s)	31, 121, 296, 304
HpyAV	CCTTC	2 cut(s)	156, 284
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	31, 121, 296, 383
HpySE526I	ACGT	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	8 cut(s)	39, 121, 148, 164, 207, 218, 284, 339
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	32, 185, 341
MhlI	GDGCHC	3 cut(s)	33, 123, 298
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	58, 193, 229
MroXI	GAANNNNTTC	1 cut(s)	164
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
NlaIV	GGNNCC	2 cut(s)	319, 355
NmeAIII	GCCGAG	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	319, 355
SapI	GCTCTTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	3 cut(s)	33, 123, 298
SetI	ASST	7 cut(s)	54, 191, 240, 295, 303, 312, 373
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SnaBI	TACGTA	1 cut(s)	371
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	33, 173, 240
TspGWI	ACGGA	1 cut(s)	346
VneI	GTGCAC	3 cut(s)	29, 119, 294
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.