AT1G11790

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3981153 .. 3985219
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11790.1

Sequence Viewer

Length: 1179 bp
ATGGCTCTGAGGTGTTTTCCCATTTGGGTTTGTCCCCAAACGACTCATCATCGTTCTCCTCTCATGGGTCTCGCTGAATTCGACGCTGATAAACGCCGTCGTTTCTGTCTCTGGGAGTGCTCTTCTTCAGCTTCTCAGAGAGCTGTCACTGCCATTGAAGGCGAGATTCCTTTTAGCCGCGAGCTCAAAAAGTCCTCTGATGAATTGGGTTTGACTCAGGAGACTCAATCTCTTTCTTTTCACAGAGACTTAAGTATGCTTCCTAAACCGCTAACTGCAAACAGTCTTTACTCTTCTGATGGCGATGATTCAAAAGTGCGAATTTCGTTTCAGGGGATACCAGGTGCATATAGTGAGACAGCAGCACTAAAAGCATTTCCAAATTGTGAAACCGTTCCATGTGAACAGTTCGAAGCTGCGTTCCAGGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTATTACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTCATAGGCTTCACATTGTCCAAGAAGTCCACTTGCCTGTGAATCATTGTCTCTTAGGAGTGCCTGGTGTTAAAAAGGAAGATATTAAATGTGTTCTAAGCCATCCTCAGGCGCTTGATCAATGTGTGAATTCACTTAACAATTTAGGCATACAGAGAATTTCTGCAAAAGATACTGCCACTGCTGCTCAGACTGTTTCTTCAAGTGGTAAGATCGACGTAGGAGCAATCGCGAGTGTACGGGCTGCAAATATCTATGGTCTAGATATTCTTGCTGAGAACATACAAGATGATGTTAACAATGTGACTCGCTTTCTGATACTTGCGAGAGAGCCTATGATTCCAAGAACAGATCGACCATATAAGACAAGTATCGTGTTCTCGCTAGAAGAAGGTCCTGGTGTGCTGTTCAAGGCCTTGGCTGTTTTTGCTTTACGAAGCATTAACTTATCTAAGATAGAAAGTCGTCCGCAGAGAAGAAGACCGTTAAGAGTAGTTGATGGTTCTAACAATGGAAGCGCTAAGTACTTTGATTACTTATTCTACATTGATTTTGAAGCCTCCATGGCTGATACACGTGCTCAGCACGCTCTTGGCCATCTACAGGAATTCGCAAGTTTCATCCGTATCCTCGGGTGTTATCCAATGGATCTAGTCAGATAA

Protein Analysis

392

Amino Acids

43.6

Weight (kDa)

6.83

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDT PF00800 108 - 284 1.7e-62 Prephenate dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 180, 749
AciI CCGC 3 cut(s) 178, 269, 986
AclWI GGATC 1 cut(s) 1173
AcoI YGGCCR 1 cut(s) 1111
AcsI RAATTY 6 cut(s) 77, 321, 472, 646, 675, 1124
AcuI CTGAAG 1 cut(s) 111
AcvI CACGTG 1 cut(s) 1094
AfaI GTAC 2 cut(s) 756, 1043
AfeI AGCGCT 1 cut(s) 1036
AfiI CCNNNNNNNGG 3 cut(s) 65, 625, 1120
AflII CTTAAG 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 1091
AgsI TTSAA 5 cut(s) 158, 312, 720, 928, 1073
AjnI CCWGG 4 cut(s) 340, 423, 580, 913
AluBI AGCT 5 cut(s) 131, 143, 184, 416, 436
AluI AGCT 5 cut(s) 131, 143, 184, 416, 436
Alw21I GWGCWC 4 cut(s) 122, 186, 438, 1099
Alw26I GTCTC 6 cut(s) 74, 113, 215, 240, 350, 572
AlwI GGATC 1 cut(s) 1173
Ama87I CYCGRG 1 cut(s) 1148
Aor51HI AGCGCT 1 cut(s) 1036
AoxI GGCC 2 cut(s) 930, 1111
ApeKI GCWGC 4 cut(s) 362, 416, 701, 761
ApoI RAATTY 6 cut(s) 77, 321, 472, 646, 675, 1124
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 2 cut(s) 631, 1037
AspS9I GGNCC 1 cut(s) 911
AsuII TTCGAA 1 cut(s) 411
AvaI CYCGRG 1 cut(s) 1148
AvaII GGWCC 1 cut(s) 911
AxyI CCTNAGG 1 cut(s) 624
BalI TGGCCA 1 cut(s) 1113
BanII GRGCYC 2 cut(s) 186, 438
BbrPI CACGTG 1 cut(s) 1094
BbsI GAAGAC 1 cut(s) 1003
Bbv12I GWGCWC 4 cut(s) 122, 186, 438, 1099
BbvI GCAGC 4 cut(s) 374, 403, 688, 748
BccI CCATC 4 cut(s) 293, 627, 1010, 1122
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 4 cut(s) 342, 425, 582, 915
BciVI GTATCC 3 cut(s) 330, 500, 1154
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 6 cut(s) 74, 113, 215, 240, 350, 572
BfaI CTAG 3 cut(s) 779, 902, 1169
BfmI CTRYAG 1 cut(s) 1118
BfoI RGCGCY 2 cut(s) 632, 1038
BfrI CTTAAG 1 cut(s) 250
BfuI GTATCC 3 cut(s) 330, 500, 1154
BglI GCCNNNNNGGC 1 cut(s) 1082
BisI GCNGC 5 cut(s) 178, 363, 417, 702, 762
BlpI GCTNAGC 1 cut(s) 1098
BlsI GCNGC 5 cut(s) 179, 364, 418, 703, 763
BmcAI AGTACT 1 cut(s) 1043
Bme1390I CCNGG 4 cut(s) 342, 425, 582, 915
Bme18I GGWCC 1 cut(s) 911
BmeT110I CYCGRG 1 cut(s) 1148
BmgT120I GGNCC 1 cut(s) 911
BmrFI CCNGG 4 cut(s) 342, 425, 582, 915
BpiI GAAGAC 1 cut(s) 1003
Bpu1102I GCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 1094
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 933, 1080, 1147
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 625, 1120
Bse21I CCTNAGG 1 cut(s) 624
BseBI CCWGG 4 cut(s) 342, 425, 582, 915
BseDI CCNNGG 3 cut(s) 933, 1080, 1147
BseGI GGATG 2 cut(s) 619, 1137
BseLI CCNNNNNNNGG 3 cut(s) 65, 625, 1120
BseMII CTCAG 6 cut(s) 149, 230, 638, 719, 783, 1112
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 374, 403, 688, 748
Bsh1236I CGCG 2 cut(s) 180, 749
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 2 cut(s) 932, 1113
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 4 cut(s) 122, 186, 438, 1099
BsiHKCI CYCGRG 1 cut(s) 1148
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 65, 625, 1120
BsmAI GTCTC 6 cut(s) 74, 113, 215, 240, 350, 572
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 932, 1113
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 1148
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 4 cut(s) 122, 186, 438, 1099
Bsp143I GATC 5 cut(s) 465, 634, 729, 868, 1165
Bsp1720I GCTNAGC 1 cut(s) 1098
Bsp19I CCATGG 1 cut(s) 1080
Bsp68I TCGCGA 1 cut(s) 749
BspACI CCGC 3 cut(s) 178, 269, 986
BspANI GGCC 2 cut(s) 932, 1113
BspCNI CTCAG 6 cut(s) 148, 229, 637, 718, 784, 1111
BspFNI CGCG 2 cut(s) 180, 749
BspPI GGATC 1 cut(s) 1173
BspQI GCTCTTC 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 933, 1080, 1147
BssMI GATC 5 cut(s) 465, 634, 729, 868, 1165
BssT1I CCWWGG 2 cut(s) 933, 1080
Bst2UI CCWGG 4 cut(s) 342, 425, 582, 915
Bst4CI ACNGT 6 cut(s) 284, 394, 408, 497, 712, 1002
Bst6I CTCTTC 2 cut(s) 127, 298
BstAFI CTTAAG 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 1094
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 182, 1104
BstDSI CCRYGG 1 cut(s) 1080
BstF5I GGATG 2 cut(s) 619, 1137
BstFNI CGCG 2 cut(s) 180, 749
BstH2I RGCGCY 2 cut(s) 632, 1038
BstHHI GCGC 2 cut(s) 631, 1037
BstKTI GATC 5 cut(s) 468, 637, 732, 871, 1168
BstMAI GTCTC 6 cut(s) 74, 113, 215, 240, 350, 572
BstMBI GATC 5 cut(s) 465, 634, 729, 868, 1165
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 7 cut(s) 149, 371, 425, 701, 944, 1082, 1103
BstNI CCWGG 4 cut(s) 342, 425, 582, 915
BstSCI CCNGG 4 cut(s) 340, 423, 580, 913
BstSFI CTRYAG 1 cut(s) 1118
BstUI CGCG 2 cut(s) 180, 749
BstV1I GCAGC 4 cut(s) 374, 403, 688, 748
BstV2I GAAGAC 1 cut(s) 1003
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
Bsu36I CCTNAGG 1 cut(s) 624
BsuI GTATCC 3 cut(s) 330, 500, 1154
BsuRI GGCC 2 cut(s) 932, 1113
BtgI CCRYGG 1 cut(s) 1080
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 619, 1137
BtsI GCAGTG 2 cut(s) 147, 696
BtsIMutI CAGTG 2 cut(s) 147, 696
BtuMI TCGCGA 1 cut(s) 749
Cac8I GCNNGC 2 cut(s) 182, 1104
CfoI GCGC 2 cut(s) 631, 1037
Cfr13I GGNCC 1 cut(s) 911
CseI GACGC 1 cut(s) 92
CsiI ACCWGGT 1 cut(s) 340
Csp6I GTAC 2 cut(s) 755, 1042
CviAII CATG 3 cut(s) 64, 399, 1081
CviQI GTAC 2 cut(s) 755, 1042
DpnI GATC 5 cut(s) 467, 636, 731, 870, 1167
DpnII GATC 5 cut(s) 465, 634, 729, 868, 1165
EaeI YGGCCR 1 cut(s) 1111
Eam1104I CTCTTC 2 cut(s) 127, 298
EarI CTCTTC 2 cut(s) 127, 298
Ecl136II GAGCTC 2 cut(s) 184, 436
Eco130I CCWWGG 2 cut(s) 933, 1080
Eco147I AGGCCT 1 cut(s) 932
Eco24I GRGCYC 2 cut(s) 186, 438
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 911
Eco47III AGCGCT 1 cut(s) 1036
Eco53kI GAGCTC 2 cut(s) 184, 436
Eco57I CTGAAG 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 1094
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 1148
EcoICRI GAGCTC 2 cut(s) 184, 436
EcoO109I RGGNCCY 1 cut(s) 911
EcoRI GAATTC 4 cut(s) 77, 472, 646, 1124
EcoRII CCWGG 4 cut(s) 340, 423, 580, 913
EcoT14I CCWWGG 2 cut(s) 933, 1080
EcoT38I GRGCYC 2 cut(s) 186, 438
ErhI CCWWGG 2 cut(s) 933, 1080
FaeI CATG 3 cut(s) 67, 402, 1084
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 63, 398, 1080
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 5 cut(s) 178, 363, 417, 702, 762
FokI GGATG 2 cut(s) 606, 1124
FriOI GRGCYC 2 cut(s) 186, 438
Fsp4HI GCNGC 5 cut(s) 178, 363, 417, 702, 762
FspBI CTAG 3 cut(s) 779, 902, 1169
GlaI GCGC 2 cut(s) 630, 1036
GluI GCNGC 5 cut(s) 178, 363, 417, 702, 762
HaeII RGCGCY 2 cut(s) 632, 1038
HaeIII GGCC 2 cut(s) 932, 1113
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 631, 1037
Hin1II CATG 3 cut(s) 67, 402, 1084
Hin6I GCGC 2 cut(s) 629, 1035
HinP1I GCGC 2 cut(s) 629, 1035
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 8 cut(s) 43, 166, 214, 223, 308, 559, 823, 856
HpaI GTTAAC 1 cut(s) 814
Hpy166II GTNNAC 4 cut(s) 404, 547, 755, 814
Hpy188I TCNGA 7 cut(s) 9, 138, 199, 298, 708, 834, 1175
Hpy188III TCNNGA 4 cut(s) 218, 469, 748, 779
Hpy8I GTNNAC 4 cut(s) 404, 547, 755, 814
Hpy99I CGWCG 3 cut(s) 86, 102, 737
HpyAV CCTTC 2 cut(s) 152, 902
HpyCH4III ACNGT 6 cut(s) 284, 394, 408, 497, 712, 1002
HpyCH4IV ACGT 2 cut(s) 735, 1093
HpyCH4V TGCA 4 cut(s) 278, 347, 683, 764
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 371, 425, 701, 944, 1082, 1103
HpySE526I ACGT 2 cut(s) 735, 1093
Hsp92II CATG 3 cut(s) 67, 402, 1084
HspAI GCGC 2 cut(s) 629, 1035
Ksp22I TGATCA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 465, 634, 729, 868, 1165
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 740
Lsp1109I GCAGC 4 cut(s) 374, 403, 688, 748
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 3 cut(s) 779, 902, 1169
MaeII ACGT 2 cut(s) 735, 1093
MaeIII GTNAC 2 cut(s) 145, 820
MalI GATC 5 cut(s) 467, 636, 731, 870, 1167
MboI GATC 5 cut(s) 465, 634, 729, 868, 1165
MboII GAAGA 9 cut(s) 114, 117, 285, 506, 608, 708, 917, 1005, 1008
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 4 cut(s) 122, 186, 438, 1099
MlsI TGGCCA 1 cut(s) 1113
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 4 cut(s) 37, 208, 217, 817
MnlI CCTC 6 cut(s) 3, 69, 205, 633, 1087, 1157
Mox20I TGGCCA 1 cut(s) 1113
MroXI GAANNNNTTC 1 cut(s) 393
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 7 cut(s) 251, 588, 603, 654, 813, 960, 1004
Msp20I TGGCCA 1 cut(s) 1113
MspCI CTTAAG 1 cut(s) 250
MspR9I CCNGG 4 cut(s) 342, 425, 582, 915
MvaI CCWGG 4 cut(s) 342, 425, 582, 915
MvnI CGCG 2 cut(s) 180, 749
MwoI GCNNNNNNNGC 7 cut(s) 149, 371, 425, 701, 944, 1082, 1103
NcoI CCATGG 1 cut(s) 1080
NdeII GATC 5 cut(s) 465, 634, 729, 868, 1165
NlaIII CATG 3 cut(s) 67, 402, 1084
NmuCI GTSAC 2 cut(s) 145, 820
NruI TCGCGA 1 cut(s) 749
NspV TTCGAA 1 cut(s) 411
PceI AGGCCT 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 4 cut(s) 166, 308, 559, 856
PkrI GCNGC 5 cut(s) 179, 364, 418, 703, 763
Ple19I CGATCG 1 cut(s) 468
PleI GAGTC 4 cut(s) 37, 208, 217, 817
PmaCI CACGTG 1 cut(s) 1094
PmlI CACGTG 1 cut(s) 1094
PpsI GAGTC 4 cut(s) 37, 208, 217, 817
Ppu21I YACGTR 1 cut(s) 1094
PpuMI RGGWCCY 1 cut(s) 911
Psp124BI GAGCTC 2 cut(s) 186, 438
Psp5II RGGWCCY 1 cut(s) 911
Psp6I CCWGG 4 cut(s) 340, 423, 580, 913
PspCI CACGTG 1 cut(s) 1094
PspGI CCWGG 4 cut(s) 340, 423, 580, 913
PspPI GGNCC 1 cut(s) 911
PspPPI RGGWCCY 1 cut(s) 911
PsuI RGATCY 1 cut(s) 1165
PvuI CGATCG 1 cut(s) 468
RruI TCGCGA 1 cut(s) 749
RsaI GTAC 2 cut(s) 756, 1043
RsaNI GTAC 2 cut(s) 755, 1042
SacI GAGCTC 2 cut(s) 186, 438
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 7 cut(s) 251, 588, 603, 654, 813, 960, 1004
SatI GCNGC 5 cut(s) 178, 363, 417, 702, 762
Sau3AI GATC 5 cut(s) 465, 634, 729, 868, 1165
Sau96I GGNCC 1 cut(s) 911
ScaI AGTACT 1 cut(s) 1043
SchI GAGTC 4 cut(s) 37, 208, 217, 817
ScrFI CCNGG 4 cut(s) 342, 425, 582, 915
SduI GDGCHC 4 cut(s) 122, 186, 438, 1099
SexAI ACCWGGT 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 1118
SfuI TTCGAA 1 cut(s) 411
SinI GGWCC 1 cut(s) 911
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SseBI AGGCCT 1 cut(s) 932
SsiI CCGC 3 cut(s) 178, 269, 986
SspMI CTAG 3 cut(s) 779, 902, 1169
SstI GAGCTC 2 cut(s) 186, 438
StuI AGGCCT 1 cut(s) 932
StyD4I CCNGG 4 cut(s) 340, 423, 580, 913
StyI CCWWGG 2 cut(s) 933, 1080
TaaI ACNGT 6 cut(s) 284, 394, 408, 497, 712, 1002
TaiI ACGT 2 cut(s) 738, 1096
TaqI TCGA 5 cut(s) 81, 411, 468, 732, 871
TatI WGTACW 1 cut(s) 1041
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 4 cut(s) 166, 308, 559, 856
Tru1I TTAA 7 cut(s) 251, 588, 603, 654, 813, 960, 1004
Tru9I TTAA 7 cut(s) 251, 588, 603, 654, 813, 960, 1004
TscAI CASTG 2 cut(s) 154, 703
TseFI GTSAC 2 cut(s) 145, 820
TseI GCWGC 4 cut(s) 362, 416, 701, 761
Tsp45I GTSAC 2 cut(s) 145, 820
TspDTI ATGAA 2 cut(s) 216, 1126
TspGWI ACGGA 1 cut(s) 1130
TspRI CASTG 2 cut(s) 154, 703
Vha464I CTTAAG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 911
XapI RAATTY 6 cut(s) 77, 321, 472, 646, 675, 1124
XbaI TCTAGA 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 3 cut(s) 779, 902, 1169
ZrmI AGTACT 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.