Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009370

Physical Location & Seq

Genomic Coordinates Reverse (-)

1815619 .. 1819107

Gene Structure 3489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGAATGTTGCAGTTTGGGGGTTTCTTTGGCTCACAAAGCTATCACCCCAGTGAAGATGAGAAGCCAAATTTGCCAGGGATGGAATCCGCAGGAGCAATTCAGAGGGTTGAGGATAATGAGTCTAAGGGTTTTCACAAGGATATGAACCTTCTTCCTAAACCATTGACAGCAGCTGATATTTCTCCTTCGCCAGATGATGGTTCAAAAGTTAGAGTTGCTTATCAGGGGTTACCGGGGGCATATAGTGAGGCTGCTGCCCTAAAAGCTTACCCGAAGTGTGAAACCGTTCCATGTGATCAGTTTGAAGCTGCATTTAAGGCCGTTGAACTGTGGTTAGTGGATAAAGCAGTTCTTCCTATTGAGAATTCTGTTGGTGGAAGCATCCACCGTAATTATGACTTGCTTCTTCGCCATAGATTGCACATAGTTGGAGAGGTACAACTTCTAGTGAACCATTGTCTCTTGGGATTGCCCGGTGCAAGGAAAGAGGAACTAAAACGTGTTCTAAGCCATCCTCAGGCTCTTGCTCAATGTGAGATGACACTAAGCAGCTTAGGCATCATCCGAGTCAATACCGATGACACTGCTCTTGCTGCGCAGATGGTGGCCTCAACTGGCCTAAAAGATGCTGGTGCTGTTGCAAGTTCTCGAGCTGCAGAAATCTATGGGCTTCAGATTCTTGCAGATAAAGTTCAAGATGATGACGATAATATTACTCGCTTTCTGATACTCGCAAGAGAACCAATAATGCCAGGAACTGAGCGGCAATATAAGACAAGCGTTGTTTTCACTCTAGAAGAAGGTCCTGGTGTACTATTCAAAGCCTTAGCAGTGTTTGCACTTAGGGGCATTAATTTGACAAAGATTGAAAGTCGCCCCCAAAAACAACGTCCATTAAGGGTTGTTGATGATTCTAATGAAGGAAGTGCCAAGTATTTCGATTACCTCTTTTACATTGACTTCGAAGCTTCTATGGCAGATCCCCGTGCCCAAAATGCTTTGGGACATTTGCAGGAATTTGCAAGTTTTCTTCGTGTTCTTGGCTGCTACCCGATGGACATAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

357

Amino Acids

39.15

Weight (kDa)

5.36

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	73 - 248	8.6e-59	Prephenate dehydratase
ACT	PF01842	261 - 303	2.6e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11790 AT1G11790
fragaria_vesca	FvH4_3g01940 FvH4_3g01940
malus_domestica	MD05G1348000.v1.1 MD10G1322400.v1.1
prunus_persica	Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1
pyrus_communis	pycom05g31550 pycom10g27290
rosa_chinensis	RchiOBHm_Chr5g0002851
rosa_laevigata	RLG00000031065
rosa_multiflora	Rmu_sc0013603.1_g000010 Rmu_sc0020722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073000
rosa_rugosa	Rorug04G0400200
rosa_samantha	Rh5AG023000 Rh5BG025700 Rh5CG025600 Rh5DG024200
rosa_wichuraiana	Rw5G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	766
AciI	CCGC	2 cut(s)	90, 766
AclWI	GGATC	1 cut(s)	977
AcsI	RAATTY	3 cut(s)	70, 367, 1019
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	441, 816
AfiI	CCNNNNNNNGG	3 cut(s)	200, 483, 520
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	6 cut(s)	207, 308, 329, 698, 823, 872
AjnI	CCWGG	3 cut(s)	76, 754, 808
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	7 cut(s)	42, 176, 269, 311, 555, 656, 971
AluI	AGCT	7 cut(s)	42, 176, 269, 311, 555, 656, 971
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	977
AlwNI	CAGNNNCTG	2 cut(s)	176, 761
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	3 cut(s)	321, 609, 619
ApeKI	GCWGC	8 cut(s)	173, 254, 257, 311, 552, 596, 656, 1047
ApoI	RAATTY	3 cut(s)	70, 367, 1019
ArsI	GACNNNNNNTTYG	2 cut(s)	877, 909
AseI	ATTAAT	1 cut(s)	855
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	2 cut(s)	237, 477
AsuHPI	GGTGA	1 cut(s)	38
AsuII	TTCGAA	1 cut(s)	966
AvaI	CYCGRG	1 cut(s)	651
AvaII	GGWCC	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	994
BbvI	GCAGC	8 cut(s)	185, 241, 244, 298, 564, 583, 643, 1034
BccI	CCATC	5 cut(s)	76, 194, 522, 598, 1051
BceAI	ACGGC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	3 cut(s)	78, 756, 810
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	237, 477
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	449, 797
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	9 cut(s)	174, 255, 258, 312, 553, 597, 657, 767, 1048
BlsI	GCNGC	9 cut(s)	175, 256, 259, 313, 554, 598, 658, 768, 1049
Bme1390I	CCNGG	5 cut(s)	78, 237, 477, 756, 810
Bme18I	GGWCC	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	806
BmrFI	CCNGG	5 cut(s)	78, 237, 477, 756, 810
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	393, 570, 619
BmuI	ACTGGG	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	556, 829
Bpu14I	TTCGAA	1 cut(s)	966
BpuMI	CCSGG	2 cut(s)	237, 477
BsaJI	CCNNGG	2 cut(s)	77, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 483, 520
Bse1I	ACTGG	2 cut(s)	51, 622
Bse21I	CCTNAGG	1 cut(s)	519
BseBI	CCWGG	3 cut(s)	78, 756, 810
BseDI	CCNNGG	2 cut(s)	77, 236
BseGI	GGATG	4 cut(s)	87, 384, 514, 564
BseLI	CCNNNNNNNGG	3 cut(s)	200, 483, 520
BseMII	CTCAG	2 cut(s)	533, 753
BseNI	ACTGG	2 cut(s)	51, 622
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	8 cut(s)	185, 241, 244, 298, 564, 583, 643, 1034
BshFI	GGCC	3 cut(s)	323, 611, 621
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	2 cut(s)	236, 477
BslFI	GGGAC	1 cut(s)	1020
BslI	CCNNNNNNNGG	3 cut(s)	200, 483, 520
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	1020
BsnI	GGCC	3 cut(s)	323, 611, 621
BsoBI	CYCGRG	1 cut(s)	651
Bsp119I	TTCGAA	1 cut(s)	966
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	2 cut(s)	298, 982
BspACI	CCGC	2 cut(s)	90, 766
BspANI	GGCC	3 cut(s)	323, 611, 621
BspCNI	CTCAG	2 cut(s)	532, 754
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	977
BspT104I	TTCGAA	1 cut(s)	966
BsrBI	CCGCTC	1 cut(s)	766
BsrI	ACTGG	2 cut(s)	51, 622
BssECI	CCNNGG	2 cut(s)	77, 236
BssMI	GATC	2 cut(s)	298, 982
Bst2UI	CCWGG	3 cut(s)	78, 756, 810
Bst4CI	ACNGT	3 cut(s)	289, 333, 392
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstBI	TTCGAA	1 cut(s)	966
BstDEI	CTNAG	8 cut(s)	126, 509, 519, 548, 556, 762, 829, 845
BstEII	GGTNACC	1 cut(s)	231
BstF5I	GGATG	4 cut(s)	87, 384, 514, 564
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	2 cut(s)	301, 985
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	298, 982
BstMWI	GCNNNNNNNGC	9 cut(s)	39, 73, 266, 320, 558, 596, 839, 977, 998
BstNI	CCWGG	3 cut(s)	78, 756, 810
BstPI	GGTNACC	1 cut(s)	231
BstSCI	CCNGG	5 cut(s)	76, 235, 475, 754, 808
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	994
BstV1I	GCAGC	8 cut(s)	185, 241, 244, 298, 564, 583, 643, 1034
BstX2I	RGATCY	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	982
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	3 cut(s)	323, 611, 621
BtsCI	GGATG	4 cut(s)	87, 384, 514, 564
BtsI	GCAGTG	2 cut(s)	585, 840
BtsIMutI	CAGTG	3 cut(s)	58, 585, 840
CaiI	CAGNNNCTG	2 cut(s)	176, 761
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	806
Csp6I	GTAC	2 cut(s)	440, 815
CviAII	CATG	1 cut(s)	294
CviQI	GTAC	2 cut(s)	440, 815
DdeI	CTNAG	8 cut(s)	126, 509, 519, 548, 556, 762, 829, 845
DpnI	GATC	2 cut(s)	300, 984
DpnII	GATC	2 cut(s)	298, 982
Eco47I	GGWCC	1 cut(s)	806
Eco57I	CTGAAG	1 cut(s)	659
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	651
Eco91I	GGTNACC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	806
EcoO65I	GGTNACC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	76, 754, 808
FaeI	CATG	1 cut(s)	297
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	1020
FatI	CATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	9 cut(s)	174, 255, 258, 312, 553, 597, 657, 767, 1048
FokI	GGATG	4 cut(s)	94, 371, 501, 551
Fsp4HI	GCNGC	9 cut(s)	174, 255, 258, 312, 553, 597, 657, 767, 1048
FspBI	CTAG	2 cut(s)	449, 797
FspI	TGCGCA	1 cut(s)	600
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	9 cut(s)	174, 255, 258, 312, 553, 597, 657, 767, 1048
HaeIII	GGCC	3 cut(s)	323, 611, 621
HapII	CCGG	2 cut(s)	236, 477
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HindIII	AAGCTT	2 cut(s)	267, 969
HinfI	GANTC	5 cut(s)	86, 122, 570, 679, 914
HpaII	CCGG	2 cut(s)	236, 477
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	454, 815
Hpy188I	TCNGA	4 cut(s)	105, 569, 678, 729
Hpy188III	TCNNGA	3 cut(s)	651, 698, 797
Hpy8I	GTNNAC	2 cut(s)	454, 815
HpyAV	CCTTC	4 cut(s)	161, 198, 797, 917
HpyCH4III	ACNGT	3 cut(s)	289, 333, 392
HpyCH4IV	ACGT	2 cut(s)	502, 892
HpyF10VI	GCNNNNNNNGC	9 cut(s)	39, 73, 266, 320, 558, 596, 839, 977, 998
HpyF3I	CTNAG	8 cut(s)	126, 509, 519, 548, 556, 762, 829, 845
HpySE526I	ACGT	2 cut(s)	502, 892
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	298, 982
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	8 cut(s)	185, 241, 244, 298, 564, 583, 643, 1034
LweI	GCATC	3 cut(s)	393, 570, 619
MaeI	CTAG	2 cut(s)	449, 797
MaeII	ACGT	2 cut(s)	502, 892
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	300, 984
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	2 cut(s)	298, 982
MboII	GAAGA	6 cut(s)	68, 146, 347, 401, 812, 1025
MflI	RGATCY	1 cut(s)	982
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	7 cut(s)	70, 99, 367, 394, 856, 1019, 1065
MlyI	GAGTC	2 cut(s)	131, 579
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	99, 106, 244, 430, 484, 528, 622, 959
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	3 cut(s)	318, 855, 899
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	236, 477
MspR9I	CCNGG	5 cut(s)	78, 237, 477, 756, 810
MvaI	CCWGG	3 cut(s)	78, 756, 810
MwoI	GCNNNNNNNGC	9 cut(s)	39, 73, 266, 320, 558, 596, 839, 977, 998
NciI	CCSGG	2 cut(s)	237, 477
NdeII	GATC	2 cut(s)	298, 982
NlaIII	CATG	1 cut(s)	297
NsbI	TGCGCA	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	966
OliI	CACNNNNGTG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	86, 679, 914
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	9 cut(s)	175, 256, 259, 313, 554, 598, 658, 768, 1049
PleI	GAGTC	2 cut(s)	130, 578
PpsI	GAGTC	2 cut(s)	130, 578
PpuMI	RGGWCCY	1 cut(s)	806
PshBI	ATTAAT	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	806
Psp6I	CCWGG	3 cut(s)	76, 754, 808
PspEI	GGTNACC	1 cut(s)	231
PspGI	CCWGG	3 cut(s)	76, 754, 808
PspPI	GGNCC	1 cut(s)	806
PspPPI	RGGWCCY	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	2 cut(s)	176, 761
PsuI	RGATCY	1 cut(s)	982
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	441, 816
RsaNI	GTAC	2 cut(s)	440, 815
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	318, 855, 899
SatI	GCNGC	9 cut(s)	174, 255, 258, 312, 553, 597, 657, 767, 1048
Sau3AI	GATC	2 cut(s)	298, 982
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	2 cut(s)	131, 579
ScrFI	CCNGG	5 cut(s)	78, 237, 477, 756, 810
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	3 cut(s)	393, 570, 619
SfcI	CTRYAG	1 cut(s)	657
Sfr274I	CTCGAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	966
SinI	GGWCC	1 cut(s)	806
SlaI	CTCGAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	7 cut(s)	70, 99, 367, 394, 856, 1019, 1065
SsiI	CCGC	2 cut(s)	90, 766
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	2 cut(s)	449, 797
StyD4I	CCNGG	5 cut(s)	76, 235, 475, 754, 808
TaaI	ACNGT	3 cut(s)	289, 333, 392
TaiI	ACGT	2 cut(s)	505, 895
TaqI	TCGA	3 cut(s)	652, 942, 966
TasI	AATT	7 cut(s)	70, 99, 367, 394, 856, 1019, 1065
TatI	WGTACW	1 cut(s)	814
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	3 cut(s)	86, 679, 914
Tru1I	TTAA	3 cut(s)	318, 855, 899
Tru9I	TTAA	3 cut(s)	318, 855, 899
TscAI	CASTG	3 cut(s)	58, 592, 840
TseI	GCWGC	8 cut(s)	173, 254, 257, 311, 552, 596, 656, 1047
TspDTI	ATGAA	2 cut(s)	161, 936
TspRI	CASTG	3 cut(s)	58, 592, 840
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	806
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	3 cut(s)	70, 367, 1019
XbaI	TCTAGA	1 cut(s)	796
XhoI	CTCGAG	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	2 cut(s)	449, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.