Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009370

Physical Location & Seq

Genomic Coordinates Forward (+)

46658739 .. 46663666

Gene Structure 4928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1348000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTGCGAAGGCTGCATCCATCTGGGTTTGTGCTAAAACCCCTTATTCTCATCAGGGTGTCTCAGATTTGAGCTTGAACCACTCTGAGTTGGCTTTGAATTCGAATTTCCGCAAATGGGAGTGTTCTTGTTTGGCTGTTGCTTCCGCCCAGAGAGCTATCACTCCGGTGGAAGATGAGAAGCCGAGCCTTACCTGCGCCGCCGAGTCTTCAGGTGCAATGGAACGGATTGAGGACAATAAGTCCCGGGAGTTTCACAAGGATTTGAACCTTCTTCCTAAACCATTGACAGCAAATTACCTTTCTCCTCCTGATGGTTCAAAAGTGAGAGTTGCTTATCAGGGGTTACCAGGGGCATATAGTGAGGCCGCTGCAGTAAAAGCTTATCCGAAGTGTGAGACCGTCCCATGTGACCAGTTTGAAGCTGCATTCAAGGCAGTTGAACTTTGGTTGGTGGATAAAGCAGTTCTTCCCATTGAGAATTCTGTAGGCGGAAGCATCCACCGTAATTATGACTTACTACTTCACCATAGACTGCACATAGTTGGAGAGGTACAATTGCAAGTGAACCATTGTCTCCTGGGATTGCCTGGTGCAAGAAAAGAGGAACTAAAACGTGTTTTAAGCCATTATCAGGCTTTTGCTCAATGTGAGATGACGCTAAGCAGTTTGGGTGTCATCACAATCAATACCGATGACAGTGCTCTGGCTGCACAGATGGTGGCCTCAACTGGCCTACGAGATACTGGTGCTGTTGCAAGTGCTCGAGCTGCAAATATTTATGGGCTTGACATTCTTGCAGAAAAAATTCAAGATGATGACGATAATATCACTCGCTTTTTGATACTTGGAAGAGAACCGATGATTCCTGGGACTGACCGGCCATATAAGACGAGCATTGTATTCACTCTTGAAGAAGGTCCTGGTGTACTATTTAAAGCCTTAGCAGTATTTGCTCTTAGGGGCATTAACTTGACAAAGATAGAGAGCCGCCCACAGAAGCAACGTCCACTAAGGATTGTGGATGATTCGAATGAAGGGAGTGCCAGGTATTTCGACTACCTCTTTTACATCGACTTTGAAGCTTCTATGGCGGATCCCCGTGCCCAATATGCGTTGGAACATCTGAAGGAGTTTGCAAGGTTTCTTCGTGTCCTTGGTTGCTACCAGAAGGACACGATTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

396

Amino Acids

43.62

Weight (kDa)

5.97

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	111 - 287	6e-58	Prephenate dehydratase
ACT	PF01842	298 - 342	1.2e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11790 AT1G11790
fragaria_vesca	FvH4_3g01940 FvH4_3g01940
malus_domestica	MD05G1348000.v1.1 MD10G1322400.v1.1
prunus_persica	Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1
pyrus_communis	pycom05g31550 pycom10g27290
rosa_chinensis	RchiOBHm_Chr5g0002851
rosa_laevigata	RLG00000031065
rosa_multiflora	Rmu_sc0013603.1_g000010 Rmu_sc0020722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073000
rosa_rugosa	Rorug04G0400200
rosa_samantha	Rh5AG023000 Rh5BG025700 Rh5CG025600 Rh5DG024200
rosa_wichuraiana	Rw5G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AciI	CCGC	7 cut(s)	112, 147, 201, 369, 492, 991, 1094
AclWI	GGATC	2 cut(s)	1091, 1104
AcoI	YGGCCR	1 cut(s)	881
AcsI	RAATTY	4 cut(s)	100, 106, 481, 807
AcuI	CTGAAG	2 cut(s)	195, 1148
AfaI	GTAC	2 cut(s)	555, 930
AfiI	CCNNNNNNNGG	3 cut(s)	118, 314, 634
AflIII	ACRYGT	1 cut(s)	616
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	6 cut(s)	349, 579, 589, 868, 922, 1046
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	75, 158, 383, 425, 770, 1085
AluI	AGCT	6 cut(s)	75, 158, 383, 425, 770, 1085
Alw21I	GWGCWC	2 cut(s)	706, 766
Alw26I	GTCTC	3 cut(s)	67, 392, 581
AlwI	GGATC	2 cut(s)	1091, 1104
Ama87I	CYCGRG	2 cut(s)	246, 765
AoxI	GGCC	4 cut(s)	366, 723, 733, 881
ApeKI	GCWGC	6 cut(s)	5, 14, 371, 425, 710, 770
ApoI	RAATTY	4 cut(s)	100, 106, 481, 807
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	1 cut(s)	518
AsuII	TTCGAA	2 cut(s)	104, 1031
AvaI	CYCGRG	2 cut(s)	246, 765
AvaII	GGWCC	1 cut(s)	920
BaeGI	GKGCMC	1 cut(s)	1108
BamHI	GGATCC	1 cut(s)	1096
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	706, 766
BbvI	GCAGC	4 cut(s)	358, 412, 697, 757
BccI	CCATC	3 cut(s)	29, 308, 712
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	6 cut(s)	351, 581, 591, 870, 924, 1048
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	3 cut(s)	67, 392, 581
BfmI	CTRYAG	2 cut(s)	372, 486
BfuAI	ACCTGC	1 cut(s)	203
BisI	GCNGC	9 cut(s)	6, 15, 201, 369, 372, 426, 711, 771, 991
BlpI	GCTNAGC	1 cut(s)	662
BlsI	GCNGC	9 cut(s)	7, 16, 202, 370, 373, 427, 712, 772, 992
Bme1390I	CCNGG	8 cut(s)	247, 248, 351, 581, 591, 870, 924, 1048
Bme18I	GGWCC	1 cut(s)	920
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmeT110I	CYCGRG	2 cut(s)	246, 765
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	1 cut(s)	1098
BmrFI	CCNGG	8 cut(s)	247, 248, 351, 581, 591, 870, 924, 1048
BmsI	GCATC	2 cut(s)	26, 507
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	943
Bpu1102I	GCTNAGC	1 cut(s)	662
Bpu14I	TTCGAA	2 cut(s)	104, 1031
BpuMI	CCSGG	2 cut(s)	247, 248
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	246, 350, 580, 869, 1156
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 314, 634
Bse118I	RCCGGY	1 cut(s)	879
Bse1I	ACTGG	3 cut(s)	415, 736, 751
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	6 cut(s)	351, 581, 591, 870, 924, 1048
BseDI	CCNNGG	5 cut(s)	246, 350, 580, 869, 1156
BseGI	GGATG	3 cut(s)	17, 498, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	118, 314, 634
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	78, 78
BseNI	ACTGG	3 cut(s)	415, 736, 751
BseRI	GAGGAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	1108
BseXI	GCAGC	4 cut(s)	358, 412, 697, 757
BsgI	GTGCAG	2 cut(s)	521, 696
BshFI	GGCC	4 cut(s)	368, 725, 735, 883
BsiHKAI	GWGCWC	2 cut(s)	706, 766
BsiHKCI	CYCGRG	2 cut(s)	246, 765
BsiSI	CCGG	3 cut(s)	167, 247, 880
BslFI	GGGAC	3 cut(s)	229, 389, 886
BslI	CCNNNNNNNGG	3 cut(s)	118, 314, 634
BsmAI	GTCTC	3 cut(s)	67, 392, 581
BsmFI	GGGAC	3 cut(s)	229, 389, 886
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	368, 725, 735, 883
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	2 cut(s)	246, 765
Bsp119I	TTCGAA	2 cut(s)	104, 1031
Bsp1286I	GDGCHC	3 cut(s)	706, 766, 1108
Bsp143I	GATC	1 cut(s)	1096
Bsp1720I	GCTNAGC	1 cut(s)	662
BspACI	CCGC	7 cut(s)	112, 147, 201, 369, 492, 991, 1094
BspANI	GGCC	4 cut(s)	368, 725, 735, 883
BspCNI	CTCAG	2 cut(s)	77, 79
BspLI	GGNNCC	1 cut(s)	1098
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	1091, 1104
BspT104I	TTCGAA	2 cut(s)	104, 1031
BspTNI	GGTCTC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	879
BsrI	ACTGG	3 cut(s)	415, 736, 751
BssAI	RCCGGY	1 cut(s)	879
BssECI	CCNNGG	5 cut(s)	246, 350, 580, 869, 1156
BssMI	GATC	1 cut(s)	1096
BssT1I	CCWWGG	1 cut(s)	1156
Bst2UI	CCWGG	6 cut(s)	351, 581, 591, 870, 924, 1048
Bst4CI	ACNGT	3 cut(s)	403, 506, 701
Bst6I	CTCTTC	1 cut(s)	847
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstBI	TTCGAA	2 cut(s)	104, 1031
BstDEI	CTNAG	6 cut(s)	64, 87, 662, 943, 959, 1013
BstEII	GGTNACC	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	17, 498, 1030
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	1099
BstMAI	GTCTC	3 cut(s)	67, 392, 581
BstMBI	GATC	1 cut(s)	1096
BstNI	CCWGG	6 cut(s)	351, 581, 591, 870, 924, 1048
BstPI	GGTNACC	1 cut(s)	345
BstSCI	CCNGG	8 cut(s)	245, 246, 349, 579, 589, 868, 922, 1046
BstSFI	CTRYAG	2 cut(s)	372, 486
BstSLI	GKGCMC	1 cut(s)	1108
BstV1I	GCAGC	4 cut(s)	358, 412, 697, 757
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
BsuRI	GGCC	4 cut(s)	368, 725, 735, 883
BtsCI	GGATG	3 cut(s)	17, 498, 1030
BtsIMutI	CAGTG	1 cut(s)	706
BveI	ACCTGC	1 cut(s)	203
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	879
Cfr13I	GGNCC	1 cut(s)	920
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	554, 929
CviAII	CATG	1 cut(s)	408
CviQI	GTAC	2 cut(s)	554, 929
DdeI	CTNAG	6 cut(s)	64, 87, 662, 943, 959, 1013
DpnI	GATC	1 cut(s)	1098
DpnII	GATC	1 cut(s)	1096
DraI	TTTAAA	1 cut(s)	937
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	881
Eam1104I	CTCTTC	1 cut(s)	847
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	847
EciI	GGCGGA	3 cut(s)	136, 507, 1109
Eco130I	CCWWGG	1 cut(s)	1156
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	2 cut(s)	195, 1148
Eco88I	CYCGRG	2 cut(s)	246, 765
Eco91I	GGTNACC	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	920
EcoO65I	GGTNACC	1 cut(s)	345
EcoRI	GAATTC	2 cut(s)	100, 481
EcoRII	CCWGG	6 cut(s)	349, 579, 589, 868, 922, 1046
EcoT14I	CCWWGG	1 cut(s)	1156
ErhI	CCWWGG	1 cut(s)	1156
FaeI	CATG	1 cut(s)	411
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	3 cut(s)	229, 389, 886
FatI	CATG	1 cut(s)	407
Fnu4HI	GCNGC	9 cut(s)	6, 15, 201, 369, 372, 426, 711, 771, 991
FokI	GGATG	3 cut(s)	4, 485, 1037
Fsp4HI	GCNGC	9 cut(s)	6, 15, 201, 369, 372, 426, 711, 771, 991
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	9 cut(s)	6, 15, 201, 369, 372, 426, 711, 771, 991
HaeIII	GGCC	4 cut(s)	368, 725, 735, 883
HapII	CCGG	3 cut(s)	167, 247, 880
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	2 cut(s)	381, 1083
HinfI	GANTC	4 cut(s)	206, 865, 1028, 1180
HpaII	CCGG	3 cut(s)	167, 247, 880
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	3 cut(s)	568, 929, 1010
Hpy188I	TCNGA	4 cut(s)	67, 88, 390, 1128
Hpy188III	TCNNGA	3 cut(s)	311, 812, 911
Hpy8I	GTNNAC	3 cut(s)	568, 929, 1010
HpyAV	CCTTC	6 cut(s)	4, 281, 911, 1031, 1123, 1165
HpyCH4III	ACNGT	3 cut(s)	403, 506, 701
HpyCH4IV	ACGT	2 cut(s)	616, 1006
HpyF3I	CTNAG	6 cut(s)	64, 87, 662, 943, 959, 1013
HpySE526I	ACGT	2 cut(s)	616, 1006
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	1096
Lsp1109I	GCAGC	4 cut(s)	358, 412, 697, 757
LweI	GCATC	2 cut(s)	26, 507
MaeII	ACGT	2 cut(s)	616, 1006
MaeIII	GTNAC	2 cut(s)	345, 410
MalI	GATC	1 cut(s)	1098
MboI	GATC	1 cut(s)	1096
MboII	GAAGA	7 cut(s)	185, 201, 266, 461, 864, 926, 1139
MfeI	CAATTG	1 cut(s)	557
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	3 cut(s)	706, 766, 1108
MluCI	AATT	7 cut(s)	100, 106, 295, 481, 508, 557, 807
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	526, 1098
MnlI	CCTC	7 cut(s)	226, 318, 358, 544, 598, 736, 1073
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	3 cut(s)	623, 936, 969
MslI	CAYNNNNRTG	2 cut(s)	57, 167
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	167, 247, 880
MspR9I	CCNGG	8 cut(s)	247, 248, 351, 581, 591, 870, 924, 1048
MunI	CAATTG	1 cut(s)	557
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	6 cut(s)	351, 581, 591, 870, 924, 1048
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	1 cut(s)	1096
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	1 cut(s)	1098
NmeAIII	GCCGAG	2 cut(s)	210, 229
NmuCI	GTSAC	1 cut(s)	410
NspV	TTCGAA	2 cut(s)	104, 1031
OliI	CACNNNNGTG	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	765
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	865, 1028, 1180
PkrI	GCNGC	9 cut(s)	7, 16, 202, 370, 373, 427, 712, 772, 992
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	920
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	6 cut(s)	349, 579, 589, 868, 922, 1046
PspEI	GGTNACC	1 cut(s)	345
PspGI	CCWGG	6 cut(s)	349, 579, 589, 868, 922, 1046
PspN4I	GGNNCC	1 cut(s)	1098
PspPI	GGNCC	1 cut(s)	920
PspPPI	RGGWCCY	1 cut(s)	920
PspXI	VCTCGAGB	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	2 cut(s)	555, 930
RsaNI	GTAC	2 cut(s)	554, 929
RseI	CAYNNNNRTG	2 cut(s)	57, 167
SaqAI	TTAA	3 cut(s)	623, 936, 969
SatI	GCNGC	9 cut(s)	6, 15, 201, 369, 372, 426, 711, 771, 991
Sau3AI	GATC	1 cut(s)	1096
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	8 cut(s)	247, 248, 351, 581, 591, 870, 924, 1048
SduI	GDGCHC	3 cut(s)	706, 766, 1108
SfaNI	GCATC	2 cut(s)	26, 507
SfcI	CTRYAG	2 cut(s)	372, 486
Sfr274I	CTCGAG	1 cut(s)	765
SfuI	TTCGAA	2 cut(s)	104, 1031
SinI	GGWCC	1 cut(s)	920
SlaI	CTCGAG	1 cut(s)	765
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	57, 167
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
Sse9I	AATT	7 cut(s)	100, 106, 295, 481, 508, 557, 807
SsiI	CCGC	7 cut(s)	112, 147, 201, 369, 492, 991, 1094
SspI	AATATT	1 cut(s)	778
StyD4I	CCNGG	8 cut(s)	245, 246, 349, 579, 589, 868, 922, 1046
StyI	CCWWGG	1 cut(s)	1156
TaaI	ACNGT	3 cut(s)	403, 506, 701
TaiI	ACGT	2 cut(s)	619, 1009
TaqI	TCGA	5 cut(s)	104, 766, 1031, 1056, 1074
TasI	AATT	7 cut(s)	100, 106, 295, 481, 508, 557, 807
TatI	WGTACW	1 cut(s)	928
TauI	GCSGC	3 cut(s)	203, 371, 993
TfiI	GAWTC	3 cut(s)	865, 1028, 1180
Tru1I	TTAA	3 cut(s)	623, 936, 969
Tru9I	TTAA	3 cut(s)	623, 936, 969
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	6 cut(s)	5, 14, 371, 425, 710, 770
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	1050
TspGWI	ACGGA	2 cut(s)	241, 1173
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	4 cut(s)	100, 106, 481, 807
XhoI	CTCGAG	1 cut(s)	765
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.