Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009370

Physical Location & Seq

Genomic Coordinates Forward (+)

40379502 .. 40384454

Gene Structure 4953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1322400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTGCCAAGGCTGCATCCATCTGGGTTTATGCTAAAACCCCTTATTCTCATCAGGGTGTCTCGGATTTGGGCACGAACCGCTCCGGGTTGGCTTTGAATTCGAATTCCCGCAAATGGGAATGTTCTTGTTTGGCCGTTGCTTCCGCCCATAGAGCTATCACTCCGGTGGAAGATGAAAAACCGAGCCTTGGCGGCGCCGCCGAGTCTTCCGGTGCAATGGAACGGATTGAGGACAATAAGACCAGGGGGTTCCACAAGGATTTGAACCTTCTTCCTAAACCATTGACAGCAAATGACCTTTCTTCTCCTAGTAATGGTTCACAAGTGAGAGTTGCTTATCAGGGGTTACCAGGGGCATATAGTGAGGCTGCTGCATTAAAAGCTTATCCGAAGTGTGAGACCGTCCCATGTGACCAGTTTGAAGCTGCATTCAAGGCAGTTGAACTTTGGTTAGTGGATAAAGCAGTTCTTCCCATTGAGAATTCTGTTGGCGGAAGCATCCACCGTAATTATGACTTGCTACTTCGCCATAGACTGCACATAGTTGGAGAGGTACAATTGCAAGTGAACCATTGTCTCTTGGGGTTGCCTGGTGTAAGAAAAGAGGAAGTAAAACGTGTTTTAAGCCATCCTCAGGCTCTTGCTCAATGTGAGATGACGCTAAGCAGTTTGGGTATCGTCAGAATCAATGCCGATGACACTGCTCTGGCTGCACAGATGGTGGCCTCAACTGGCCTACGGAATACTGGTGCTGTTGCAAGTGCTCGAGCTGCAAAAATTTATGGGCTTGAAATTCTTGTAGAAAAAATTCAAGATGATGACGATAATATCACTCGCTTTTTGATACTTGCAAGAGAACCGATAATTCCAGGGACTGACCGGCCATATAAGACGAGCGTTGTTTTCACTCTTGAAGAAGGTCCTGGTGTACTATTTAAAGCCTTAGCAGTATTTGCTCTTAGGGGCATTAACTTGACAAAGATAGAGAGTCGCCCACAGAAGCAACGTCCACTAAGGGTTGTGGATGATTCAAATGAAGGGAGTGCCAAGTATTTCGACTACCTCTTTTACATTGACTTTGAAGCTTCTATGGCAGAGCCCCGTGCCCAATATGCTTTGGGACATCTGCAGGAATTTGCAAGATTTCTTCGTGTCCTTGGTAGCTACCCAATGGACACGATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

397

Amino Acids

43.29

Weight (kDa)

6.77

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	112 - 287	9e-60	Prephenate dehydratase
ACT	PF01842	300 - 342	3e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11790 AT1G11790
fragaria_vesca	FvH4_3g01940 FvH4_3g01940
malus_domestica	MD05G1348000.v1.1 MD10G1322400.v1.1
prunus_persica	Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1
pyrus_communis	pycom05g31550 pycom10g27290
rosa_chinensis	RchiOBHm_Chr5g0002851
rosa_laevigata	RLG00000031065
rosa_multiflora	Rmu_sc0013603.1_g000010 Rmu_sc0020722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073000
rosa_rugosa	Rorug04G0400200
rosa_samantha	Rh5AG023000 Rh5BG025700 Rh5CG025600 Rh5DG024200
rosa_wichuraiana	Rw5G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	6 cut(s)	82, 112, 147, 195, 201, 495
AcoI	YGGCCR	2 cut(s)	135, 884
AcsI	RAATTY	7 cut(s)	100, 106, 484, 780, 795, 810, 1136
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	558, 933
AfiI	CCNNNNNNNGG	5 cut(s)	117, 118, 191, 317, 637
AflIII	ACRYGT	1 cut(s)	619
AjnI	CCWGG	5 cut(s)	245, 352, 592, 871, 925
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	158, 386, 428, 773, 1088, 1167
AluI	AGCT	6 cut(s)	158, 386, 428, 773, 1088, 1167
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	3 cut(s)	67, 395, 584
AlwNI	CAGNNNCTG	1 cut(s)	878
Ama87I	CYCGRG	1 cut(s)	768
AoxI	GGCC	4 cut(s)	135, 726, 736, 884
ApeKI	GCWGC	7 cut(s)	5, 14, 371, 374, 428, 713, 773
ApoI	RAATTY	7 cut(s)	100, 106, 484, 780, 795, 810, 1136
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	923
AsuC2I	CCSGG	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	768
AvaII	GGWCC	1 cut(s)	923
AxyI	CCTNAGG	1 cut(s)	636
BaeGI	GKGCMC	2 cut(s)	77, 1111
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	1104
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	5 cut(s)	358, 361, 415, 700, 760
BccI	CCATC	3 cut(s)	29, 639, 715
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	5 cut(s)	247, 354, 594, 873, 927
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	3 cut(s)	67, 395, 584
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	1130
BfoI	RGCGCY	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	9 cut(s)	6, 15, 196, 201, 372, 375, 429, 714, 774
BlpI	GCTNAGC	1 cut(s)	665
BlsI	GCNGC	9 cut(s)	7, 16, 197, 202, 373, 376, 430, 715, 775
Bme1390I	CCNGG	6 cut(s)	88, 247, 354, 594, 873, 927
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	2 cut(s)	199, 254
BmrFI	CCNGG	6 cut(s)	88, 247, 354, 594, 873, 927
BmsI	GCATC	2 cut(s)	26, 510
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	946
Bpu1102I	GCTNAGC	1 cut(s)	665
Bpu14I	TTCGAA	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	6 cut(s)	9, 190, 246, 353, 872, 1159
BsaWI	WCCGGW	2 cut(s)	166, 212
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 118, 191, 317, 637
Bse118I	RCCGGY	1 cut(s)	882
Bse1I	ACTGG	3 cut(s)	418, 739, 754
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	5 cut(s)	247, 354, 594, 873, 927
BseDI	CCNNGG	6 cut(s)	9, 190, 246, 353, 872, 1159
BseGI	GGATG	4 cut(s)	17, 501, 631, 1033
BseLI	CCNNNNNNNGG	5 cut(s)	117, 118, 191, 317, 637
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	3 cut(s)	418, 739, 754
BseSI	GKGCMC	2 cut(s)	77, 1111
BseXI	GCAGC	5 cut(s)	358, 361, 415, 700, 760
BsgI	GTGCAG	2 cut(s)	524, 699
BshFI	GGCC	4 cut(s)	137, 728, 738, 886
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	768
BsiSI	CCGG	4 cut(s)	87, 167, 213, 883
BslFI	GGGAC	3 cut(s)	392, 889, 1137
BslI	CCNNNNNNNGG	5 cut(s)	117, 118, 191, 317, 637
BsmAI	GTCTC	3 cut(s)	67, 395, 584
BsmFI	GGGAC	3 cut(s)	392, 889, 1137
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	4 cut(s)	137, 728, 738, 886
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	768
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	77, 769, 1104, 1111
Bsp1720I	GCTNAGC	1 cut(s)	665
BspACI	CCGC	6 cut(s)	82, 112, 147, 195, 201, 495
BspANI	GGCC	4 cut(s)	137, 728, 738, 886
BspCNI	CTCAG	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	199, 254
BspMAI	CTGCAG	1 cut(s)	1134
BspT104I	TTCGAA	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	882
BsrI	ACTGG	3 cut(s)	418, 739, 754
BssAI	RCCGGY	1 cut(s)	882
BssECI	CCNNGG	6 cut(s)	9, 190, 246, 353, 872, 1159
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	3 cut(s)	9, 190, 1159
Bst2UI	CCWGG	5 cut(s)	247, 354, 594, 873, 927
Bst4CI	ACNGT	2 cut(s)	406, 509
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	104
BstDEI	CTNAG	5 cut(s)	636, 665, 946, 962, 1016
BstEII	GGTNACC	1 cut(s)	348
BstF5I	GGATG	4 cut(s)	17, 501, 631, 1033
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstMAI	GTCTC	3 cut(s)	67, 395, 584
BstNI	CCWGG	5 cut(s)	247, 354, 594, 873, 927
BstPI	GGTNACC	1 cut(s)	348
BstSCI	CCNGG	6 cut(s)	86, 245, 352, 592, 871, 925
BstSFI	CTRYAG	1 cut(s)	1130
BstSLI	GKGCMC	2 cut(s)	77, 1111
BstV1I	GCAGC	5 cut(s)	358, 361, 415, 700, 760
BstV2I	GAAGAC	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	4 cut(s)	137, 728, 738, 886
BtsCI	GGATG	4 cut(s)	17, 501, 631, 1033
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	882
Cfr13I	GGNCC	1 cut(s)	923
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	557, 932
CviAII	CATG	1 cut(s)	411
CviQI	GTAC	2 cut(s)	557, 932
DdeI	CTNAG	5 cut(s)	636, 665, 946, 962, 1016
DinI	GGCGCC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	940
EaeI	YGGCCR	2 cut(s)	135, 884
EciI	GGCGGA	2 cut(s)	136, 510
Eco130I	CCWWGG	3 cut(s)	9, 190, 1159
Eco24I	GRGCYC	1 cut(s)	1104
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	923
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	768
Eco91I	GGTNACC	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	923
EcoO65I	GGTNACC	1 cut(s)	348
EcoRI	GAATTC	3 cut(s)	100, 106, 484
EcoRII	CCWGG	5 cut(s)	245, 352, 592, 871, 925
EcoT14I	CCWWGG	3 cut(s)	9, 190, 1159
EcoT38I	GRGCYC	1 cut(s)	1104
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	3 cut(s)	9, 190, 1159
FaeI	CATG	1 cut(s)	414
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	3 cut(s)	392, 889, 1137
FatI	CATG	1 cut(s)	410
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	9 cut(s)	6, 15, 196, 201, 372, 375, 429, 714, 774
FokI	GGATG	4 cut(s)	4, 488, 618, 1040
FriOI	GRGCYC	1 cut(s)	1104
Fsp4HI	GCNGC	9 cut(s)	6, 15, 196, 201, 372, 375, 429, 714, 774
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	9 cut(s)	6, 15, 196, 201, 372, 375, 429, 714, 774
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	137, 728, 738, 886
HapII	CCGG	4 cut(s)	87, 167, 213, 883
HgaI	GACGC	1 cut(s)	670
HhaI	GCGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	2 cut(s)	384, 1086
HinfI	GANTC	5 cut(s)	206, 687, 991, 1031, 1183
HpaII	CCGG	4 cut(s)	87, 167, 213, 883
Hpy166II	GTNNAC	4 cut(s)	323, 571, 932, 1013
Hpy188I	TCNGA	3 cut(s)	67, 393, 686
Hpy188III	TCNNGA	2 cut(s)	815, 914
Hpy8I	GTNNAC	4 cut(s)	323, 571, 932, 1013
HpyAV	CCTTC	3 cut(s)	281, 914, 1034
HpyCH4III	ACNGT	2 cut(s)	406, 509
HpyCH4IV	ACGT	2 cut(s)	619, 1009
HpyF3I	CTNAG	5 cut(s)	636, 665, 946, 962, 1016
HpySE526I	ACGT	2 cut(s)	619, 1009
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	198
KasI	GGCGCC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	5 cut(s)	358, 361, 415, 700, 760
LweI	GCATC	2 cut(s)	26, 510
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	619, 1009
MaeIII	GTNAC	2 cut(s)	348, 413
MbiI	CCGCTC	1 cut(s)	84
MboII	GAAGA	7 cut(s)	185, 201, 266, 297, 464, 929, 1142
MfeI	CAATTG	1 cut(s)	560
MhlI	GDGCHC	4 cut(s)	77, 769, 1104, 1111
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	215, 1000
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	226, 361, 547, 601, 645, 739, 1076
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	4 cut(s)	380, 626, 939, 972
MslI	CAYNNNNRTG	2 cut(s)	57, 167
MspI	CCGG	4 cut(s)	87, 167, 213, 883
MspR9I	CCNGG	6 cut(s)	88, 247, 354, 594, 873, 927
MunI	CAATTG	1 cut(s)	560
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	5 cut(s)	247, 354, 594, 873, 927
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	88
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	2 cut(s)	199, 254
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	104
OliI	CACNNNNGTG	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	768
PctI	GAATGC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	3 cut(s)	687, 1031, 1183
PkrI	GCNGC	9 cut(s)	7, 16, 197, 202, 373, 376, 430, 715, 775
PleI	GAGTC	2 cut(s)	214, 999
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	2 cut(s)	214, 999
PpuMI	RGGWCCY	1 cut(s)	923
Psp5II	RGGWCCY	1 cut(s)	923
Psp6I	CCWGG	5 cut(s)	245, 352, 592, 871, 925
PspEI	GGTNACC	1 cut(s)	348
PspGI	CCWGG	5 cut(s)	245, 352, 592, 871, 925
PspN4I	GGNNCC	2 cut(s)	199, 254
PspPI	GGNCC	1 cut(s)	923
PspPPI	RGGWCCY	1 cut(s)	923
PspXI	VCTCGAGB	1 cut(s)	768
PstI	CTGCAG	1 cut(s)	1134
PstNI	CAGNNNCTG	1 cut(s)	878
RsaI	GTAC	2 cut(s)	558, 933
RsaNI	GTAC	2 cut(s)	557, 932
RseI	CAYNNNNRTG	2 cut(s)	57, 167
SaqAI	TTAA	4 cut(s)	380, 626, 939, 972
SatI	GCNGC	9 cut(s)	6, 15, 196, 201, 372, 375, 429, 714, 774
Sau96I	GGNCC	1 cut(s)	923
SchI	GAGTC	2 cut(s)	215, 1000
ScrFI	CCNGG	6 cut(s)	88, 247, 354, 594, 873, 927
SduI	GDGCHC	4 cut(s)	77, 769, 1104, 1111
SfaNI	GCATC	2 cut(s)	26, 510
SfcI	CTRYAG	1 cut(s)	1130
SfoI	GGCGCC	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	1 cut(s)	923
SlaI	CTCGAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	2 cut(s)	57, 167
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
SsiI	CCGC	6 cut(s)	82, 112, 147, 195, 201, 495
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	6 cut(s)	86, 245, 352, 592, 871, 925
StyI	CCWWGG	3 cut(s)	9, 190, 1159
TaaI	ACNGT	2 cut(s)	406, 509
TaiI	ACGT	2 cut(s)	622, 1012
TaqI	TCGA	3 cut(s)	104, 769, 1059
TatI	WGTACW	1 cut(s)	931
TauI	GCSGC	2 cut(s)	198, 203
TfiI	GAWTC	3 cut(s)	687, 1031, 1183
Tru1I	TTAA	4 cut(s)	380, 626, 939, 972
Tru9I	TTAA	4 cut(s)	380, 626, 939, 972
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	7 cut(s)	5, 14, 371, 374, 428, 713, 773
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	192, 1053
TspGWI	ACGGA	2 cut(s)	241, 757
TspRI	CASTG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	7 cut(s)	100, 106, 484, 780, 795, 810, 1136
XhoI	CTCGAG	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.