Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009370

Physical Location & Seq

Genomic Coordinates Reverse (-)

905663 .. 911191

Gene Structure 5529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G019500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTGTCAAGGGTGCACCCACTTGGTGTTATGCTAAAACCCCTTGTTCTCATCCAGGCATCTCAGATTTGGGCTCAACTCGTTCTGGGTTGGCTTTCAATTTGAGTTTCCGCAAATGGGAATGTTGTTGTTTGGGTGTTGCTTCGGCTCAGAGAGCTATCACTCCGGTTGAAGATGAAAAGCCAAACTTGACCGGAGCCGAGTCTTCGGGGGCAATTCAACGGATTGAGGACAATGAGTCCAGGGCATTTCATAAGGATATGAACCTTCTTCCTAAACCATTGACAGCAAATGACCTTTCTTCTTCTAGTGATGGTTCAAAAGTGAGAGTTGCTTACCAGGGGTTACCGGGGGCATATAGTGAGGACGCTGCACTAAAAGCTTATCCGAAGTGTGAGACCGTCCCATGTGACCAGTTTGAAGCTGCGTTTAAGGCAGTTGAACTTTGGTTAGTGGATAAAGCAGTTCTTCCCATTGAGAATTCTGTTGGTGGAAGCATCCACCGTAATTATGACTTACTGCTTCGCCATAGATTGCACATAGTTGGAGAGGTACAATTGCAAGTGAACCATTGTCTTTTGGGATTACCTGATGTAACAAAAGAGGAACTAAAACGGGTTTTAAGCCATCCTCAGGCTCTTGCTCAATGTGAGATGACGCTAAGCAGTTTGGGAATCGTCAGAATCAATGCTGATGACTCTGCTCTGGCTGCGCAGATGGTGGCCTCAACTGGCCTAAGAAATACGGGTGCGGTTGCAAGTGCTCGAGCTGCAAAAATCTATGGGCTTGACATTCTTGCAGAAAAAATTCAAGACGATGACGATAATATTACTCGCTTTCTGATACTTGCTAGAGAACCAATAATTCCAGGGACTGATAGGCCATATAAGACGAGTGTTGTTTTCACTCTTGAAGAAGGTCCCGGTGTACTATTCAAAGCCTTAGCAGTGTTTGCTCTTAGGGGAATTAACTTGACAAAGATAGAGAGTCGCCCACAGAGACAACGTCCATTAAGGGTTGTAGATGATTCCAATGAAGGGAGTGCCAAGTATTTCGACTACCTCTTTTACATTGATTTTGAAGCTTCTATGGCAGAGCCCCGTGCCCAATATGCTTTGGGACATCTGCAGGAATTTGCAAGATTTCTCCGTGTCCTTGGTAGCTACCCAATGGACACAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

396

Amino Acids

43.31

Weight (kDa)

5.96

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11790 AT1G11790
fragaria_vesca	FvH4_3g01940 FvH4_3g01940
malus_domestica	MD05G1348000.v1.1 MD10G1322400.v1.1
prunus_persica	Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1
pyrus_communis	pycom05g31550 pycom10g27290
rosa_chinensis	RchiOBHm_Chr5g0002851
rosa_laevigata	RLG00000031065
rosa_multiflora	Rmu_sc0013603.1_g000010 Rmu_sc0020722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073000
rosa_rugosa	Rorug04G0400200
rosa_samantha	Rh5AG023000 Rh5BG025700 Rh5CG025600 Rh5DG024200
rosa_wichuraiana	Rw5G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	714
AciI	CCGC	2 cut(s)	112, 752
AcsI	RAATTY	3 cut(s)	481, 807, 1133
AdeI	CACNNNGTG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	555, 930
AfiI	CCNNNNNNNGG	3 cut(s)	118, 634, 1038
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	4 cut(s)	55, 242, 339, 868
AluBI	AGCT	6 cut(s)	158, 383, 425, 770, 1085, 1164
AluI	AGCT	6 cut(s)	158, 383, 425, 770, 1085, 1164
Alw21I	GWGCWC	2 cut(s)	19, 766
Alw26I	GTCTC	2 cut(s)	392, 994
Alw44I	GTGCAC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	875
Ama87I	CYCGRG	1 cut(s)	765
AoxI	GGCC	3 cut(s)	723, 733, 881
ApaLI	GTGCAC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	371, 425, 710, 770
ApoI	RAATTY	3 cut(s)	481, 807, 1133
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	2 cut(s)	351, 924
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	1 cut(s)	920
AxyI	CCTNAGG	1 cut(s)	633
BaeGI	GKGCMC	2 cut(s)	19, 1108
BanII	GRGCYC	2 cut(s)	77, 1101
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	19, 766
BbvI	GCAGC	4 cut(s)	358, 412, 697, 757
BccI	CCATC	3 cut(s)	308, 636, 712
BciT130I	CCWGG	4 cut(s)	57, 244, 341, 870
BcnI	CCSGG	2 cut(s)	351, 924
BcoDI	GTCTC	2 cut(s)	392, 994
BfaI	CTAG	2 cut(s)	309, 852
BfmI	CTRYAG	1 cut(s)	1127
BisI	GCNGC	4 cut(s)	372, 426, 711, 771
BlpI	GCTNAGC	1 cut(s)	662
BlsI	GCNGC	4 cut(s)	373, 427, 712, 772
Bme1390I	CCNGG	6 cut(s)	57, 244, 341, 351, 870, 924
Bme18I	GGWCC	1 cut(s)	920
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	2 cut(s)	199, 922
BmrFI	CCNGG	6 cut(s)	57, 244, 341, 351, 870, 924
BmsI	GCATC	2 cut(s)	69, 507
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	943
Bpu1102I	GCTNAGC	1 cut(s)	662
BpuMI	CCSGG	2 cut(s)	351, 924
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	243, 340, 350, 869, 1156
BsaWI	WCCGGW	2 cut(s)	166, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 634, 1038
Bse1I	ACTGG	2 cut(s)	415, 736
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	4 cut(s)	57, 244, 341, 870
BseDI	CCNNGG	5 cut(s)	243, 340, 350, 869, 1156
BseGI	GGATG	3 cut(s)	52, 498, 628
BseLI	CCNNNNNNNGG	3 cut(s)	118, 634, 1038
BseMII	CTCAG	3 cut(s)	78, 164, 647
BseNI	ACTGG	2 cut(s)	415, 736
BseSI	GKGCMC	2 cut(s)	19, 1108
BseXI	GCAGC	4 cut(s)	358, 412, 697, 757
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	725, 735, 883
BsiHKAI	GWGCWC	2 cut(s)	19, 766
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	4 cut(s)	167, 195, 350, 924
BslFI	GGGAC	4 cut(s)	389, 886, 906, 1134
BslI	CCNNNNNNNGG	3 cut(s)	118, 634, 1038
BsmAI	GTCTC	2 cut(s)	392, 994
BsmFI	GGGAC	4 cut(s)	389, 886, 906, 1134
BsnI	GGCC	3 cut(s)	725, 735, 883
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	765
Bsp1286I	GDGCHC	5 cut(s)	19, 77, 766, 1101, 1108
Bsp1720I	GCTNAGC	1 cut(s)	662
BspACI	CCGC	2 cut(s)	112, 752
BspANI	GGCC	3 cut(s)	725, 735, 883
BspCNI	CTCAG	3 cut(s)	77, 163, 646
BspLI	GGNNCC	2 cut(s)	199, 922
BspMAI	CTGCAG	1 cut(s)	1131
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	415, 736
BssECI	CCNNGG	5 cut(s)	243, 340, 350, 869, 1156
BssT1I	CCWWGG	1 cut(s)	1156
Bst2UI	CCWGG	4 cut(s)	57, 244, 341, 870
Bst4CI	ACNGT	2 cut(s)	403, 506
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstDEI	CTNAG	7 cut(s)	64, 150, 633, 662, 737, 943, 959
BstEII	GGTNACC	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	52, 498, 628
BstHHI	GCGC	1 cut(s)	715
BstMAI	GTCTC	2 cut(s)	392, 994
BstMWI	GCNNNNNNNGC	8 cut(s)	155, 380, 434, 710, 770, 953, 1091, 1112
BstNI	CCWGG	4 cut(s)	57, 244, 341, 870
BstPI	GGTNACC	1 cut(s)	345
BstSCI	CCNGG	6 cut(s)	55, 242, 339, 349, 868, 922
BstSFI	CTRYAG	1 cut(s)	1127
BstSLI	GKGCMC	2 cut(s)	19, 1108
BstV1I	GCAGC	4 cut(s)	358, 412, 697, 757
BstV2I	GAAGAC	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	725, 735, 883
BtsCI	GGATG	3 cut(s)	52, 498, 628
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	1 cut(s)	954
CaiI	CAGNNNCTG	1 cut(s)	875
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	920
CseI	GACGC	2 cut(s)	377, 667
Csp6I	GTAC	2 cut(s)	554, 929
CviAII	CATG	1 cut(s)	408
CviQI	GTAC	2 cut(s)	554, 929
DdeI	CTNAG	7 cut(s)	64, 150, 633, 662, 737, 943, 959
DraIII	CACNNNGTG	1 cut(s)	27
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	1156
Eco24I	GRGCYC	2 cut(s)	77, 1101
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	920
Eco81I	CCTNAGG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	765
Eco91I	GGTNACC	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	920
EcoO65I	GGTNACC	1 cut(s)	345
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	4 cut(s)	55, 242, 339, 868
EcoT14I	CCWWGG	1 cut(s)	1156
EcoT38I	GRGCYC	2 cut(s)	77, 1101
ErhI	CCWWGG	1 cut(s)	1156
FaeI	CATG	1 cut(s)	411
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 453, 485
FaqI	GGGAC	4 cut(s)	389, 886, 906, 1134
FatI	CATG	1 cut(s)	407
Fnu4HI	GCNGC	4 cut(s)	372, 426, 711, 771
FokI	GGATG	3 cut(s)	39, 485, 615
FriOI	GRGCYC	2 cut(s)	77, 1101
Fsp4HI	GCNGC	4 cut(s)	372, 426, 711, 771
FspBI	CTAG	2 cut(s)	309, 852
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	4 cut(s)	372, 426, 711, 771
HaeIII	GGCC	3 cut(s)	725, 735, 883
HapII	CCGG	4 cut(s)	167, 195, 350, 924
HgaI	GACGC	2 cut(s)	377, 667
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HindIII	AAGCTT	2 cut(s)	381, 1083
HinfI	GANTC	7 cut(s)	203, 239, 675, 684, 698, 988, 1028
HpaII	CCGG	4 cut(s)	167, 195, 350, 924
Hpy166II	GTNNAC	3 cut(s)	17, 568, 929
Hpy188I	TCNGA	5 cut(s)	67, 153, 390, 683, 843
Hpy188III	TCNNGA	2 cut(s)	812, 911
Hpy8I	GTNNAC	3 cut(s)	17, 568, 929
HpyAV	CCTTC	3 cut(s)	278, 911, 1031
HpyCH4III	ACNGT	2 cut(s)	403, 506
HpyCH4IV	ACGT	1 cut(s)	1006
HpyCH4V	TGCA	9 cut(s)	17, 374, 538, 562, 758, 773, 800, 1129, 1139
HpyF10VI	GCNNNNNNNGC	8 cut(s)	155, 380, 434, 710, 770, 953, 1091, 1112
HpyF3I	CTNAG	7 cut(s)	64, 150, 633, 662, 737, 943, 959
HpySE526I	ACGT	1 cut(s)	1006
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	1 cut(s)	713
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	4 cut(s)	358, 412, 697, 757
LweI	GCATC	2 cut(s)	69, 507
MaeI	CTAG	2 cut(s)	309, 852
MaeII	ACGT	1 cut(s)	1006
MaeIII	GTNAC	3 cut(s)	345, 410, 595
MboII	GAAGA	7 cut(s)	185, 198, 263, 294, 297, 461, 926
MfeI	CAATTG	1 cut(s)	557
MhlI	GDGCHC	5 cut(s)	19, 77, 766, 1101, 1108
MlyI	GAGTC	4 cut(s)	212, 248, 692, 997
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	7 cut(s)	223, 358, 544, 598, 642, 736, 1073
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	4 cut(s)	432, 623, 969, 1013
MspI	CCGG	4 cut(s)	167, 195, 350, 924
MspR9I	CCNGG	6 cut(s)	57, 244, 341, 351, 870, 924
MunI	CAATTG	1 cut(s)	557
MvaI	CCWGG	4 cut(s)	57, 244, 341, 870
MwoI	GCNNNNNNNGC	8 cut(s)	155, 380, 434, 710, 770, 953, 1091, 1112
NciI	CCSGG	2 cut(s)	351, 924
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	2 cut(s)	199, 922
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	410
NsbI	TGCGCA	1 cut(s)	714
PaeR7I	CTCGAG	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	675, 684, 1028
PflFI	GACNNNGTC	1 cut(s)	1005
PkrI	GCNGC	4 cut(s)	373, 427, 712, 772
PleI	GAGTC	4 cut(s)	211, 247, 692, 996
PpsI	GAGTC	4 cut(s)	211, 247, 692, 996
PpuMI	RGGWCCY	1 cut(s)	920
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	4 cut(s)	55, 242, 339, 868
PspEI	GGTNACC	1 cut(s)	345
PspGI	CCWGG	4 cut(s)	55, 242, 339, 868
PspN4I	GGNNCC	2 cut(s)	199, 922
PspPI	GGNCC	1 cut(s)	920
PspPPI	RGGWCCY	1 cut(s)	920
PspXI	VCTCGAGB	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	1131
PstNI	CAGNNNCTG	1 cut(s)	875
PsyI	GACNNNGTC	1 cut(s)	1005
RsaI	GTAC	2 cut(s)	555, 930
RsaNI	GTAC	2 cut(s)	554, 929
SaqAI	TTAA	4 cut(s)	432, 623, 969, 1013
SatI	GCNGC	4 cut(s)	372, 426, 711, 771
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	4 cut(s)	212, 248, 692, 997
ScrFI	CCNGG	6 cut(s)	57, 244, 341, 351, 870, 924
SduI	GDGCHC	5 cut(s)	19, 77, 766, 1101, 1108
SfaNI	GCATC	2 cut(s)	69, 507
SfcI	CTRYAG	1 cut(s)	1127
Sfr274I	CTCGAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	920
SlaI	CTCGAG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
SsiI	CCGC	2 cut(s)	112, 752
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	2 cut(s)	309, 852
StyD4I	CCNGG	6 cut(s)	55, 242, 339, 349, 868, 922
StyI	CCWWGG	1 cut(s)	1156
TaaI	ACNGT	2 cut(s)	403, 506
TaiI	ACGT	1 cut(s)	1009
TaqI	TCGA	2 cut(s)	766, 1056
TatI	WGTACW	1 cut(s)	928
TfiI	GAWTC	3 cut(s)	675, 684, 1028
Tru1I	TTAA	4 cut(s)	432, 623, 969, 1013
Tru9I	TTAA	4 cut(s)	432, 623, 969, 1013
TscAI	CASTG	1 cut(s)	954
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	4 cut(s)	371, 425, 710, 770
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	192, 242, 278, 1050
TspGWI	ACGGA	2 cut(s)	238, 1139
TspRI	CASTG	1 cut(s)	954
Tth111I	GACNNNGTC	1 cut(s)	1005
VneI	GTGCAC	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	3 cut(s)	481, 807, 1133
XhoI	CTCGAG	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	309, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.