Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020722.1

Orthogroup ID

OG0009370

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1730

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020722.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggctgtgaagggtggctctatctggagttgtgctaaaaccccttattctcatcagggtatttcagatttgaggtctaatcgttctgggttgggtttgaatttgagtttgcgcaaatgggaatgttgcagtttgggggtttctttggctcacaaagctatcaccccagttgaaggtgagaagccaaatttgccagggatggaatccgcaggagcaattcagagggttgaggataatgagtctaagggttttcacaaggatatgaaccttcttcctaaaccattgacagcagctgatatttctccttcgccagatgatggttcaaaagttagagttgcttatcaggggttaccgggggcatatagtgaggctgctgccctaaaagcttacccgaagtgtgaaaccgttccatgtgatcagtttgaagctgcatttaaggccgttgaactgtggttagtggataaagcagttcttcctattgagaattctgttggtggaagcatccaccgtaattatgacttgcttcttcgccatagattgcacatagttggagaggtacaacttctagtgaaccattgtctcttgggattgcccggtgtaaggaaagaggaactaaaacgtgttctaagccatcctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

213

Amino Acids

23.14

Weight (kDa)

8.19

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11790 AT1G11790
fragaria_vesca	FvH4_3g01940 FvH4_3g01940
malus_domestica	MD05G1348000.v1.1 MD10G1322400.v1.1
prunus_persica	Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1
pyrus_communis	pycom05g31550 pycom10g27290
rosa_chinensis	RchiOBHm_Chr5g0002851
rosa_laevigata	RLG00000031065
rosa_multiflora	Rmu_sc0013603.1_g000010 Rmu_sc0020722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073000
rosa_rugosa	Rorug04G0400200
rosa_samantha	Rh5AG023000 Rh5BG025700 Rh5CG025600 Rh5DG024200
rosa_wichuraiana	Rw5G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	3 cut(s)	100, 187, 484
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	173, 317, 600
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	5 cut(s)	100, 173, 324, 425, 446
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	158, 293, 386, 428
AluI	AGCT	4 cut(s)	158, 293, 386, 428
Alw26I	GTCTC	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	4 cut(s)	290, 371, 374, 428
ApoI	RAATTY	3 cut(s)	100, 187, 484
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	354, 594
AsuHPI	GGTGA	2 cut(s)	154, 188
BbvI	GCAGC	4 cut(s)	302, 358, 361, 415
BccI	CCATC	2 cut(s)	193, 311
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	354, 594
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	1 cut(s)	566
BisI	GCNGC	4 cut(s)	291, 372, 375, 429
BlsI	GCNGC	4 cut(s)	292, 373, 376, 430
Bme1390I	CCNGG	3 cut(s)	195, 354, 594
BmrFI	CCNGG	3 cut(s)	195, 354, 594
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	354, 594
BsaJI	CCNNGG	2 cut(s)	194, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 317, 600
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	194, 353
BseGI	GGATG	3 cut(s)	204, 501, 631
BseLI	CCNNNNNNNGG	3 cut(s)	173, 317, 600
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	302, 358, 361, 415
BshFI	GGCC	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	353, 594
BslI	CCNNNNNNNGG	3 cut(s)	173, 317, 600
BsmAI	GTCTC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	194, 353
BssMI	GATC	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	406, 450, 509
BstDEI	CTNAG	3 cut(s)	243, 626, 636
BstEII	GGTNACC	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	204, 501, 631
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 190, 383, 437
BstNI	CCWGG	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	348
BstSCI	CCNGG	3 cut(s)	193, 352, 592
BstV1I	GCAGC	4 cut(s)	302, 358, 361, 415
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	204, 501, 631
CaiI	CAGNNNCTG	1 cut(s)	293
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	1 cut(s)	411
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	3 cut(s)	243, 626, 636
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	348
EcoO65I	GGTNACC	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	414
FaiI	YATR	7 cut(s)	263, 361, 363, 412, 516, 534, 545
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	1 cut(s)	410
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	291, 372, 375, 429
FokI	GGATG	3 cut(s)	211, 488, 618
Fsp4HI	GCNGC	4 cut(s)	291, 372, 375, 429
FspBI	CTAG	1 cut(s)	566
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	291, 372, 375, 429
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	2 cut(s)	353, 594
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	203, 239
HpaII	CCGG	2 cut(s)	353, 594
HphI	GGTGA	2 cut(s)	154, 188
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	2 cut(s)	67, 222
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	4 cut(s)	4, 167, 278, 315
HpyCH4III	ACNGT	3 cut(s)	406, 450, 509
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	3 cut(s)	129, 431, 541
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 190, 383, 437
HpyF3I	CTNAG	3 cut(s)	243, 626, 636
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	4 cut(s)	302, 358, 361, 415
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	3 cut(s)	263, 464, 518
MluCI	AATT	5 cut(s)	100, 187, 216, 484, 511
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	6 cut(s)	66, 216, 223, 361, 547, 601
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	353, 594
MspR9I	CCNGG	3 cut(s)	195, 354, 594
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	155, 190, 383, 437
NciI	CCSGG	2 cut(s)	354, 594
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	1 cut(s)	414
NsbI	TGCGCA	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	292, 373, 376, 430
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	4 cut(s)	291, 372, 375, 429
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	195, 354, 594
SetI	ASST	9 cut(s)	77, 160, 178, 270, 295, 388, 430, 558, 622
SfaNI	GCATC	1 cut(s)	510
Sse9I	AATT	5 cut(s)	100, 187, 216, 484, 511
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	3 cut(s)	193, 352, 592
TaaI	ACNGT	3 cut(s)	406, 450, 509
TaiI	ACGT	1 cut(s)	622
TasI	AATT	5 cut(s)	100, 187, 216, 484, 511
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseI	GCWGC	4 cut(s)	290, 371, 374, 428
TspDTI	ATGAA	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	317
XapI	RAATTY	3 cut(s)	100, 187, 484
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.