pycom05g31550

Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
31271442 .. 31275720
4279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31550.11

Sequence Viewer

Length: 1188 bp
ATGGCTGCGAAGGCTGCATCCCTCTGGGTTTGTGCTAAAACCCCTTATTCTCATCAGGGTGTCTCAGATTTGAGCTCGAACCACTCTGAGTTGGCTTTGAATTCGAATTTCCGCAAATGGGAGTGTTCTTGTTTGGCTGTTGCTTCCGCCCAGAGAGCTATCACTCCGGTGGAAGATGAGAAGCCGAGCCTTACCTGCGCCGCCGAGTCTTCAGGTGCAATGGAGCGGATTGAGGACAATAAGTCCAGGGAGTTTCACAAGGATTTGAACCTTCTTCCTAAACCATTGACAGCAAATGACTTTTCTCCTCGTGATGGTTCAAAAGTGAGAGTTGCTTATCAGGGGTTACCAGGGGCATATAGTGAGGCCGCTGCAGTAAAAGCTTATCCGAAGTGTGAGACCGTCCCATGTGACCAGTTTGAAGCTGCATTCAAGGCAGTTGAACTTTGGTTGGTGGATAAAGCAGTTCTTCCCATTGAGAATTCTGTAGGTGGAAGCATCCACCGTAATTATGACTTACTACTTCACCACAGACTGCACATAGTTGGAGAGGTACAATTGCAAGTGAACCATTGTCTCCTGGGATTGCCCGGTGCAAGAAAAGAGGAACTAAAACGTGTTTTAAGCCATTATCAGGCTTTTGCTCAATGTGAGATGACGCTAAGCAGTTTGGGTATCATCAGAATCAATACCGATGACAGTGCTCTGGCTGCACAGATGGTGGCCTCAACTGGCCTACGAGATACTGGTGCTGTTGCAAGTGCTCGAGCTGCAAATATTTATGGGCTTGACATTCTTGCAGAAAAAATTCAAGATGATGACGATAATATCACTCGCTTTTTGATACTTGGAAGAGAACCGATAATTCCAGGGTCTGACCGGCCATATAAGACGAGCGTTGTTTTCACTCTTGAAGAAGGTCCTGGTGTACTATTTAAAGCCTTAGCAGTTTTTGCTCTTAGGGGCATTAACTTGACAAAGATAGAGAGCCGCCCACAGAAGCAACGTCCTCTAAGGATTGTGGATGATTCGAATGAAGGGAGTGCCAAGTATTTCGACTACCTCTTTTACATTGATTTTGAAGCTTCTATGGCGGATCCCCGTGCCCAATATGCGTTGGAACATCTGAAGGAATTTGCAAGGTTTCTTCGTGTCCTTGGTTGCTACCCAAAGGACACGATTCCATAG

Protein Analysis

396

Amino Acids

43.6

Weight (kDa)

6.1

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 7 cut(s) 112, 147, 201, 226, 369, 991, 1094
AclWI GGATC 2 cut(s) 1091, 1104
AcoI YGGCCR 1 cut(s) 881
AcsI RAATTY 5 cut(s) 100, 106, 481, 807, 1133
AcuI CTGAAG 2 cut(s) 195, 1148
AfaI GTAC 2 cut(s) 555, 930
AfiI CCNNNNNNNGG 3 cut(s) 118, 314, 634
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 9 cut(s) 100, 268, 321, 422, 433, 443, 812, 914, 1082
AhdI GACNNNNNGTC 1 cut(s) 241
AjnI CCWGG 5 cut(s) 245, 349, 579, 868, 922
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 6 cut(s) 75, 158, 383, 425, 770, 1085
AluI AGCT 6 cut(s) 75, 158, 383, 425, 770, 1085
Alw21I GWGCWC 3 cut(s) 77, 706, 766
Alw26I GTCTC 3 cut(s) 67, 392, 581
AlwI GGATC 2 cut(s) 1091, 1104
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 4 cut(s) 366, 723, 733, 881
ApeKI GCWGC 6 cut(s) 5, 14, 371, 425, 710, 770
ApoI RAATTY 5 cut(s) 100, 106, 481, 807, 1133
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 1 cut(s) 518
AsuII TTCGAA 2 cut(s) 104, 1031
AvaI CYCGRG 1 cut(s) 765
AvaII GGWCC 1 cut(s) 920
BaeGI GKGCMC 1 cut(s) 1108
BamHI GGATCC 1 cut(s) 1096
BanII GRGCYC 1 cut(s) 77
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 3 cut(s) 77, 706, 766
BbvI GCAGC 4 cut(s) 358, 412, 697, 757
BccI CCATC 2 cut(s) 308, 712
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 5 cut(s) 247, 351, 581, 870, 924
BcnI CCSGG 1 cut(s) 591
BcoDI GTCTC 3 cut(s) 67, 392, 581
BfmI CTRYAG 2 cut(s) 372, 486
BfuAI ACCTGC 1 cut(s) 203
BisI GCNGC 9 cut(s) 6, 15, 201, 369, 372, 426, 711, 771, 991
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 9 cut(s) 7, 16, 202, 370, 373, 427, 712, 772, 992
Bme1390I CCNGG 6 cut(s) 247, 351, 581, 591, 870, 924
Bme18I GGWCC 1 cut(s) 920
BmeRI GACNNNNNGTC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 765
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 1 cut(s) 1098
BmrFI CCNGG 6 cut(s) 247, 351, 581, 591, 870, 924
BmsI GCATC 2 cut(s) 26, 507
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 943
Bpu1102I GCTNAGC 1 cut(s) 662
Bpu14I TTCGAA 2 cut(s) 104, 1031
BpuMI CCSGG 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 5 cut(s) 246, 350, 580, 869, 1156
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 314, 634
Bse118I RCCGGY 1 cut(s) 879
Bse1I ACTGG 3 cut(s) 415, 736, 751
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 5 cut(s) 247, 351, 581, 870, 924
BseDI CCNNGG 5 cut(s) 246, 350, 580, 869, 1156
BseGI GGATG 3 cut(s) 17, 498, 1030
BseLI CCNNNNNNNGG 3 cut(s) 118, 314, 634
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 78, 78
BseNI ACTGG 3 cut(s) 415, 736, 751
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 4 cut(s) 358, 412, 697, 757
BsgI GTGCAG 2 cut(s) 521, 696
BshFI GGCC 4 cut(s) 368, 725, 735, 883
BsiHKAI GWGCWC 3 cut(s) 77, 706, 766
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 3 cut(s) 167, 591, 880
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 118, 314, 634
BsmAI GTCTC 3 cut(s) 67, 392, 581
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 4 cut(s) 368, 725, 735, 883
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 765
Bsp119I TTCGAA 2 cut(s) 104, 1031
Bsp1286I GDGCHC 4 cut(s) 77, 706, 766, 1108
Bsp143I GATC 1 cut(s) 1096
Bsp1720I GCTNAGC 1 cut(s) 662
BspACI CCGC 7 cut(s) 112, 147, 201, 226, 369, 991, 1094
BspANI GGCC 4 cut(s) 368, 725, 735, 883
BspCNI CTCAG 2 cut(s) 77, 79
BspLI GGNNCC 1 cut(s) 1098
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 2 cut(s) 1091, 1104
BspT104I TTCGAA 2 cut(s) 104, 1031
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 879
BsrI ACTGG 3 cut(s) 415, 736, 751
BssAI RCCGGY 1 cut(s) 879
BssECI CCNNGG 5 cut(s) 246, 350, 580, 869, 1156
BssMI GATC 1 cut(s) 1096
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 1156
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 5 cut(s) 247, 351, 581, 870, 924
Bst4CI ACNGT 3 cut(s) 403, 506, 701
Bst6I CTCTTC 1 cut(s) 847
BstAPI GCANNNNNTGC 1 cut(s) 953
BstBI TTCGAA 2 cut(s) 104, 1031
BstDEI CTNAG 6 cut(s) 64, 87, 662, 943, 959, 1013
BstEII GGTNACC 1 cut(s) 345
BstF5I GGATG 3 cut(s) 17, 498, 1030
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 1099
BstMAI GTCTC 3 cut(s) 67, 392, 581
BstMBI GATC 1 cut(s) 1096
BstNI CCWGG 5 cut(s) 247, 351, 581, 870, 924
BstPI GGTNACC 1 cut(s) 345
BstSCI CCNGG 6 cut(s) 245, 349, 579, 589, 868, 922
BstSFI CTRYAG 2 cut(s) 372, 486
BstSLI GKGCMC 1 cut(s) 1108
BstV1I GCAGC 4 cut(s) 358, 412, 697, 757
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 1096
BstYI RGATCY 1 cut(s) 1096
BsuRI GGCC 4 cut(s) 368, 725, 735, 883
BtsCI GGATG 3 cut(s) 17, 498, 1030
BtsIMutI CAGTG 1 cut(s) 706
BveI ACCTGC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 875
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 879
Cfr13I GGNCC 1 cut(s) 920
CseI GACGC 1 cut(s) 667
Csp6I GTAC 2 cut(s) 554, 929
CviAII CATG 1 cut(s) 408
CviQI GTAC 2 cut(s) 554, 929
DdeI CTNAG 6 cut(s) 64, 87, 662, 943, 959, 1013
DpnI GATC 1 cut(s) 1098
DpnII GATC 1 cut(s) 1096
DraI TTTAAA 1 cut(s) 937
DriI GACNNNNNGTC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 881
Eam1104I CTCTTC 1 cut(s) 847
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 847
EciI GGCGGA 2 cut(s) 136, 1109
Ecl136II GAGCTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 1156
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 920
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 195, 1148
Eco88I CYCGRG 1 cut(s) 765
Eco91I GGTNACC 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 920
EcoO65I GGTNACC 1 cut(s) 345
EcoRI GAATTC 2 cut(s) 100, 481
EcoRII CCWGG 5 cut(s) 245, 349, 579, 868, 922
EcoT14I CCWWGG 1 cut(s) 1156
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 1156
FaeI CATG 1 cut(s) 411
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 389
FatI CATG 1 cut(s) 407
Fnu4HI GCNGC 9 cut(s) 6, 15, 201, 369, 372, 426, 711, 771, 991
FokI GGATG 3 cut(s) 4, 485, 1037
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 9 cut(s) 6, 15, 201, 369, 372, 426, 711, 771, 991
GlaI GCGC 1 cut(s) 199
GluI GCNGC 9 cut(s) 6, 15, 201, 369, 372, 426, 711, 771, 991
HaeIII GGCC 4 cut(s) 368, 725, 735, 883
HapII CCGG 3 cut(s) 167, 591, 880
HgaI GACGC 1 cut(s) 667
HhaI GCGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 411
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 2 cut(s) 381, 1083
HinfI GANTC 4 cut(s) 206, 684, 1028, 1180
HpaII CCGG 3 cut(s) 167, 591, 880
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 2 cut(s) 568, 929
Hpy188I TCNGA 6 cut(s) 67, 88, 390, 683, 877, 1128
Hpy188III TCNNGA 3 cut(s) 311, 812, 911
Hpy8I GTNNAC 2 cut(s) 568, 929
HpyAV CCTTC 5 cut(s) 4, 281, 911, 1031, 1123
HpyCH4III ACNGT 3 cut(s) 403, 506, 701
HpyCH4IV ACGT 2 cut(s) 616, 1006
HpyF3I CTNAG 6 cut(s) 64, 87, 662, 943, 959, 1013
HpySE526I ACGT 2 cut(s) 616, 1006
Hsp92II CATG 1 cut(s) 411
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 1096
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 4 cut(s) 358, 412, 697, 757
LweI GCATC 2 cut(s) 26, 507
MaeII ACGT 2 cut(s) 616, 1006
MaeIII GTNAC 2 cut(s) 345, 410
MalI GATC 1 cut(s) 1098
MbiI CCGCTC 1 cut(s) 226
MboI GATC 1 cut(s) 1096
MboII GAAGA 7 cut(s) 185, 201, 266, 461, 864, 926, 1139
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 1 cut(s) 1096
MhlI GDGCHC 4 cut(s) 77, 706, 766, 1108
MluCI AATT 8 cut(s) 100, 106, 481, 508, 557, 807, 864, 1133
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 526, 1098
MnlI CCTC 9 cut(s) 32, 226, 318, 358, 544, 598, 736, 1020, 1073
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 3 cut(s) 623, 936, 969
MslI CAYNNNNRTG 2 cut(s) 57, 167
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 3 cut(s) 167, 591, 880
MspR9I CCNGG 6 cut(s) 247, 351, 581, 591, 870, 924
MunI CAATTG 1 cut(s) 557
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 5 cut(s) 247, 351, 581, 870, 924
NciI CCSGG 1 cut(s) 591
NdeII GATC 1 cut(s) 1096
NlaIII CATG 1 cut(s) 411
NlaIV GGNNCC 1 cut(s) 1098
NmeAIII GCCGAG 2 cut(s) 210, 229
NmuCI GTSAC 1 cut(s) 410
NspV TTCGAA 2 cut(s) 104, 1031
OliI CACNNNNGTG 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 765
PctI GAATGC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 3 cut(s) 684, 1028, 1180
PkrI GCNGC 9 cut(s) 7, 16, 202, 370, 373, 427, 712, 772, 992
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 5 cut(s) 245, 349, 579, 868, 922
PspEI GGTNACC 1 cut(s) 345
PspGI CCWGG 5 cut(s) 245, 349, 579, 868, 922
PspN4I GGNNCC 1 cut(s) 1098
PspPI GGNCC 1 cut(s) 920
PspPPI RGGWCCY 1 cut(s) 920
PspXI VCTCGAGB 1 cut(s) 765
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 1096
RsaI GTAC 2 cut(s) 555, 930
RsaNI GTAC 2 cut(s) 554, 929
RseI CAYNNNNRTG 2 cut(s) 57, 167
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 623, 936, 969
SatI GCNGC 9 cut(s) 6, 15, 201, 369, 372, 426, 711, 771, 991
Sau3AI GATC 1 cut(s) 1096
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 6 cut(s) 247, 351, 581, 591, 870, 924
SduI GDGCHC 4 cut(s) 77, 706, 766, 1108
SfaNI GCATC 2 cut(s) 26, 507
SfcI CTRYAG 2 cut(s) 372, 486
Sfr274I CTCGAG 1 cut(s) 765
SfuI TTCGAA 2 cut(s) 104, 1031
SinI GGWCC 1 cut(s) 920
SlaI CTCGAG 1 cut(s) 765
SmiMI CAYNNNNRTG 2 cut(s) 57, 167
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 8 cut(s) 100, 106, 481, 508, 557, 807, 864, 1133
SsiI CCGC 7 cut(s) 112, 147, 201, 226, 369, 991, 1094
SspI AATATT 1 cut(s) 778
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 6 cut(s) 245, 349, 579, 589, 868, 922
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 3 cut(s) 403, 506, 701
TaiI ACGT 2 cut(s) 619, 1009
TaqI TCGA 5 cut(s) 77, 104, 766, 1031, 1056
TasI AATT 8 cut(s) 100, 106, 481, 508, 557, 807, 864, 1133
TatI WGTACW 1 cut(s) 928
TauI GCSGC 3 cut(s) 203, 371, 993
TfiI GAWTC 3 cut(s) 684, 1028, 1180
Tru1I TTAA 3 cut(s) 623, 936, 969
Tru9I TTAA 3 cut(s) 623, 936, 969
TscAI CASTG 1 cut(s) 706
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 6 cut(s) 5, 14, 371, 425, 710, 770
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 1050
TspRI CASTG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 920
XapI RAATTY 5 cut(s) 100, 106, 481, 807, 1133
XhoI CTCGAG 1 cut(s) 765
XmnI GAANNNNTTC 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.