Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009370

Physical Location & Seq

Genomic Coordinates Reverse (-)

985544 .. 990088

Gene Structure 4545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01940.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTGATGGCTGTGAAGGGTGGTGTTCCTATCTGGGGTGAGGCTACAACACTGTTTTCTAATCAGGGTGTTTCAGATTTGAGGTCTAATCTTTCTGGGTTGTGTTTGAATTTGAGTTTGAGGAAATGGGAATGTTGCTGCTTGGGGGTTTCTTTGGCTCAGAGAGCTATCACCCCAGTTGAGGATGAGAAGCCAATTTTGCCAGGGATGGAATCTGCTGGTGCAATTCAGAGGGTTGAGGATACTGACGCCAGGGGATTTCACAAGGATATGAACCTTCTGCCTAAACCATTGACAGCATCTGATATTTCTCCTTCACCAAATGATGGTTCAAAAGTTAGAGTTGCTTATCAGGGATTACCAGGGGCATATAGTGAGGCTGCTGCCCTGAAAGCTTACCCGAAGTGTGAAACTGTTCCATGTGACCAGTTTGAAGCTGCATTCAAGGCCGTTGAACTGTGGTTAGTGGATAAAGCAGTTCTTCCTATTGAGAATTCTGTTGCTGGAAGCATTCACAGGAATTATGACTTGCTTCTTCGCCATAGATTGCACATTGTGGGAGAGGTACAACTTCTAGTGAACCATTGCCTCTTGGGATTGCCTGGTGTAGAAAAAGAGGAACTAAAATGTGTTCTAAGCCATCCTCAGGCTCTTGCTCAATGTGAGATGACACTAAGCAGCTTAGGTATCGTCCGAGTCAATACCGACGACACTGCTCTCGCTGCGCAGATGGTGGCCTCAACTGGCGTAAGAGATACTGGTGCTGTTGCAAGTTCTCGAGCTGCAGAAATCTATGGCCTTCAGATTCTGTCAGATAAAATTCAAGATGATGACGATAATATTACTCGCTTTCTGATACTTGCGAGAGAACCAATAATACCAGGAACTGAGAGGCAATACAAGACAAGTGTCGTTTTCACTCTCGAAGAAGGTCCTGGTGTACTATTTAAAGCCTTGGCAGTGTTTGCTCTGAGGGGCATTAATCTGACAAAGATTGAAAGTCGCCCCCAGAAACAACGTCCATTAAGGGTTGTTGATGATTCTAATCAAGGAAGTGCCAAGTACTTTGATTACCTCTTTTACATTGACTTTGAAGCATCTATGGCAGATCCGCGTGCCCAATATGCTTTGGGACATTTGCAGGAATTTGCAAGGTTTCTTCGTGTTCTTGGCTGCTATCCGATGGACAAAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDT

Protein Analysis

400

Amino Acids

43.7

Weight (kDa)

5.62

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDT	PF00800	121 - 296	7.8e-59	Prephenate dehydratase
ACT	PF01842	309 - 348	3.9e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11790 AT1G11790
fragaria_vesca	FvH4_3g01940 FvH4_3g01940
malus_domestica	MD05G1348000.v1.1 MD10G1322400.v1.1
prunus_persica	Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1 Prupe.4G019500_v2.0.a1
pyrus_communis	pycom05g31550 pycom10g27290
rosa_chinensis	RchiOBHm_Chr5g0002851
rosa_laevigata	RLG00000031065
rosa_multiflora	Rmu_sc0013603.1_g000010 Rmu_sc0020722.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073000
rosa_rugosa	Rorug04G0400200
rosa_samantha	Rh5AG023000 Rh5BG025700 Rh5CG025600 Rh5DG024200
rosa_wichuraiana	Rw5G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	726
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccII	CGCG	1 cut(s)	1114
AciI	CCGC	1 cut(s)	1112
AclWI	GGATC	1 cut(s)	1103
AcsI	RAATTY	5 cut(s)	109, 493, 819, 1145, 1191
AcuI	CTGAAG	1 cut(s)	785
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	556
AfaI	GTAC	3 cut(s)	567, 942, 1064
AfiI	CCNNNNNNNGG	4 cut(s)	35, 181, 326, 646
AgsI	TTSAA	8 cut(s)	109, 333, 434, 445, 455, 824, 998, 1094
AjnI	CCWGG	6 cut(s)	202, 251, 361, 601, 880, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	5 cut(s)	167, 395, 437, 681, 782
AluI	AGCT	5 cut(s)	167, 395, 437, 681, 782
AlwI	GGATC	1 cut(s)	1103
AlwNI	CAGNNNCTG	3 cut(s)	302, 808, 887
Ama87I	CYCGRG	1 cut(s)	777
AoxI	GGCC	3 cut(s)	447, 735, 796
ApeKI	GCWGC	8 cut(s)	138, 380, 383, 437, 678, 722, 782, 1173
ApoI	RAATTY	5 cut(s)	109, 493, 819, 1145, 1191
AseI	ATTAAT	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	1 cut(s)	932
AsuHPI	GGTGA	4 cut(s)	16, 50, 163, 309
AvaI	CYCGRG	1 cut(s)	777
AvaII	GGWCC	1 cut(s)	932
AxyI	CCTNAGG	1 cut(s)	645
BaeGI	GKGCMC	1 cut(s)	1120
BbvI	GCAGC	8 cut(s)	125, 367, 370, 424, 690, 709, 769, 1160
BccI	CCATC	5 cut(s)	202, 320, 648, 724, 1177
BceAI	ACGGC	1 cut(s)	434
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	6 cut(s)	204, 253, 363, 603, 882, 936
BciVI	GTATCC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	783
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	8 cut(s)	139, 381, 384, 438, 679, 723, 783, 1174
BlsI	GCNGC	8 cut(s)	140, 382, 385, 439, 680, 724, 784, 1175
BmcAI	AGTACT	1 cut(s)	1064
Bme1390I	CCNGG	6 cut(s)	204, 253, 363, 603, 882, 936
Bme18I	GGWCC	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	777
BmgT120I	GGNCC	1 cut(s)	932
BmrFI	CCNGG	6 cut(s)	204, 253, 363, 603, 882, 936
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	308, 1106
BmuI	ACTGGG	1 cut(s)	170
BoxI	GACNNNNGTC	1 cut(s)	908
Bpu10I	CCTNAGC	1 cut(s)	682
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	203, 252, 362, 954
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 181, 326, 646
Bse1I	ACTGG	4 cut(s)	176, 427, 748, 763
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	1 cut(s)	1044
BseBI	CCWGG	6 cut(s)	204, 253, 363, 603, 882, 936
BseDI	CCNNGG	4 cut(s)	203, 252, 362, 954
BseGI	GGATG	3 cut(s)	190, 213, 640
BseJI	GATNNNNATC	1 cut(s)	1044
BseLI	CCNNNNNNNGG	4 cut(s)	35, 181, 326, 646
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	4 cut(s)	173, 659, 879, 962
BseNI	ACTGG	4 cut(s)	176, 427, 748, 763
BseSI	GKGCMC	1 cut(s)	1120
BseXI	GCAGC	8 cut(s)	125, 367, 370, 424, 690, 709, 769, 1160
Bsh1236I	CGCG	1 cut(s)	1114
BshFI	GGCC	3 cut(s)	449, 737, 798
BsiHKCI	CYCGRG	1 cut(s)	777
BslFI	GGGAC	1 cut(s)	1146
BslI	CCNNNNNNNGG	4 cut(s)	35, 181, 326, 646
BsmFI	GGGAC	1 cut(s)	1146
BsmI	GAATGC	2 cut(s)	440, 510
BsnI	GGCC	3 cut(s)	449, 737, 798
BsoBI	CYCGRG	1 cut(s)	777
Bsp1286I	GDGCHC	1 cut(s)	1120
Bsp143I	GATC	1 cut(s)	1108
BspACI	CCGC	1 cut(s)	1112
BspANI	GGCC	3 cut(s)	449, 737, 798
BspCNI	CTCAG	4 cut(s)	172, 658, 880, 963
BspFNI	CGCG	1 cut(s)	1114
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	1 cut(s)	1103
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	4 cut(s)	176, 427, 748, 763
BssECI	CCNNGG	4 cut(s)	203, 252, 362, 954
BssMI	GATC	1 cut(s)	1108
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	954
Bst2UI	CCWGG	6 cut(s)	204, 253, 363, 603, 882, 936
Bst4CI	ACNGT	3 cut(s)	54, 415, 459
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	965
BstC8I	GCNNGC	1 cut(s)	1116
BstDEI	CTNAG	7 cut(s)	159, 635, 645, 674, 682, 888, 971
BstF5I	GGATG	3 cut(s)	190, 213, 640
BstFNI	CGCG	1 cut(s)	1114
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	1 cut(s)	1111
BstMBI	GATC	1 cut(s)	1108
BstMWI	GCNNNNNNNGC	8 cut(s)	164, 199, 392, 446, 722, 965, 1103, 1124
BstNI	CCWGG	6 cut(s)	204, 253, 363, 603, 882, 936
BstPAI	GACNNNNGTC	1 cut(s)	908
BstSCI	CCNGG	6 cut(s)	202, 251, 361, 601, 880, 934
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	1120
BstUI	CGCG	1 cut(s)	1114
BstV1I	GCAGC	8 cut(s)	125, 367, 370, 424, 690, 709, 769, 1160
BstX2I	RGATCY	1 cut(s)	1108
BstYI	RGATCY	1 cut(s)	1108
Bsu36I	CCTNAGG	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	449, 737, 798
BtsCI	GGATG	3 cut(s)	190, 213, 640
BtsI	GCAGTG	2 cut(s)	711, 966
BtsIMutI	CAGTG	3 cut(s)	50, 711, 966
Cac8I	GCNNGC	1 cut(s)	1116
CaiI	CAGNNNCTG	3 cut(s)	302, 808, 887
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	1 cut(s)	932
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	3 cut(s)	566, 941, 1063
CviAII	CATG	1 cut(s)	420
CviQI	GTAC	3 cut(s)	566, 941, 1063
DdeI	CTNAG	7 cut(s)	159, 635, 645, 674, 682, 888, 971
DpnI	GATC	1 cut(s)	1110
DpnII	GATC	1 cut(s)	1108
DraI	TTTAAA	1 cut(s)	949
DraIII	CACNNNGTG	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	954
Eco47I	GGWCC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	785
Eco81I	CCTNAGG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	777
EcoO109I	RGGNCCY	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	6 cut(s)	202, 251, 361, 601, 880, 934
EcoT14I	CCWWGG	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	954
FaeI	CATG	1 cut(s)	423
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	1146
FatI	CATG	1 cut(s)	419
Fnu4HI	GCNGC	8 cut(s)	139, 381, 384, 438, 679, 723, 783, 1174
FokI	GGATG	3 cut(s)	197, 220, 627
Fsp4HI	GCNGC	8 cut(s)	139, 381, 384, 438, 679, 723, 783, 1174
FspBI	CTAG	1 cut(s)	575
FspI	TGCGCA	1 cut(s)	726
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	8 cut(s)	139, 381, 384, 438, 679, 723, 783, 1174
HaeIII	GGCC	3 cut(s)	449, 737, 798
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	727
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	423
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	4 cut(s)	212, 696, 805, 1040
HphI	GGTGA	4 cut(s)	16, 50, 163, 309
Hpy166II	GTNNAC	2 cut(s)	580, 941
Hpy188III	TCNNGA	3 cut(s)	777, 824, 923
Hpy8I	GTNNAC	2 cut(s)	580, 941
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	5 cut(s)	10, 287, 324, 809, 923
HpyCH4III	ACNGT	3 cut(s)	54, 415, 459
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	7 cut(s)	224, 440, 550, 770, 785, 1141, 1151
HpyF10VI	GCNNNNNNNGC	8 cut(s)	164, 199, 392, 446, 722, 965, 1103, 1124
HpyF3I	CTNAG	7 cut(s)	159, 635, 645, 674, 682, 888, 971
HpySE526I	ACGT	1 cut(s)	1018
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	423
HspAI	GCGC	1 cut(s)	725
Kzo9I	GATC	1 cut(s)	1108
Lsp1109I	GCAGC	8 cut(s)	125, 367, 370, 424, 690, 709, 769, 1160
LweI	GCATC	2 cut(s)	308, 1106
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	1110
MboI	GATC	1 cut(s)	1108
MboII	GAAGA	4 cut(s)	473, 527, 938, 1151
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	1 cut(s)	1120
MluCI	AATT	8 cut(s)	109, 195, 225, 493, 520, 819, 1145, 1191
MlyI	GAGTC	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	3 cut(s)	948, 981, 1025
MspR9I	CCNGG	6 cut(s)	204, 253, 363, 603, 882, 936
Mva1269I	GAATGC	2 cut(s)	440, 510
MvaI	CCWGG	6 cut(s)	204, 253, 363, 603, 882, 936
MvnI	CGCG	1 cut(s)	1114
MwoI	GCNNNNNNNGC	8 cut(s)	164, 199, 392, 446, 722, 965, 1103, 1124
NdeII	GATC	1 cut(s)	1108
NlaIII	CATG	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	422
NsbI	TGCGCA	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	777
PctI	GAATGC	2 cut(s)	440, 510
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	212, 805, 1040
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	8 cut(s)	140, 382, 385, 439, 680, 724, 784, 1175
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	932
PshAI	GACNNNNGTC	1 cut(s)	908
PshBI	ATTAAT	1 cut(s)	981
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	6 cut(s)	202, 251, 361, 601, 880, 934
PspGI	CCWGG	6 cut(s)	202, 251, 361, 601, 880, 934
PspPI	GGNCC	1 cut(s)	932
PspPPI	RGGWCCY	1 cut(s)	932
PsrI	GAACNNNNNNTAC	2 cut(s)	861, 893
PstI	CTGCAG	1 cut(s)	787
PstNI	CAGNNNCTG	3 cut(s)	302, 808, 887
PsuI	RGATCY	1 cut(s)	1108
RsaI	GTAC	3 cut(s)	567, 942, 1064
RsaNI	GTAC	3 cut(s)	566, 941, 1063
SaqAI	TTAA	3 cut(s)	948, 981, 1025
SatI	GCNGC	8 cut(s)	139, 381, 384, 438, 679, 723, 783, 1174
Sau3AI	GATC	1 cut(s)	1108
Sau96I	GGNCC	1 cut(s)	932
ScaI	AGTACT	1 cut(s)	1064
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	6 cut(s)	204, 253, 363, 603, 882, 936
SduI	GDGCHC	1 cut(s)	1120
SfaNI	GCATC	2 cut(s)	308, 1106
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	932
SlaI	CTCGAG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	777
SmoI	CTYRAG	1 cut(s)	777
Sse9I	AATT	8 cut(s)	109, 195, 225, 493, 520, 819, 1145, 1191
SsiI	CCGC	1 cut(s)	1112
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	6 cut(s)	202, 251, 361, 601, 880, 934
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	3 cut(s)	54, 415, 459
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	2 cut(s)	778, 924
TasI	AATT	8 cut(s)	109, 195, 225, 493, 520, 819, 1145, 1191
TatI	WGTACW	2 cut(s)	940, 1062
TfiI	GAWTC	3 cut(s)	212, 805, 1040
Tru1I	TTAA	3 cut(s)	948, 981, 1025
Tru9I	TTAA	3 cut(s)	948, 981, 1025
TscAI	CASTG	3 cut(s)	57, 718, 966
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	8 cut(s)	138, 380, 383, 437, 678, 722, 782, 1173
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	57, 718, 966
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	932
VspI	ATTAAT	1 cut(s)	981
XapI	RAATTY	5 cut(s)	109, 493, 819, 1145, 1191
XhoI	CTCGAG	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	575
ZrmI	AGTACT	1 cut(s)	1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.