AT1G12470

Vacuolar protein sorting-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4250945 .. 4257392
6448 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12470.1

Sequence Viewer

Length: 2967 bp
ATGGATCAAGGAAGGCAAGTGTTTTCAGTAGATCTTCTCGAGAGATATGCGACAAAGAATCGTGGCATGATTACATGTATGGCTGCTGGGAATGATGTAATTGTTCTTGGAACAAGTAAAGGATGGATTATCCGGTATGATTTCGGAGTTGGGAGTTCTAATGATATTGATCTCGCTGTTGGTCGAACTGGGGAGCAATCAATTCACAAGGTTTTTGTTGATCCTGGTGGTAGTCATTGCATTGCTACAGTCACTGGTGTTGGAGGAGCTGAAACTTTTTATACTCATGCAAAGTGGCTTAAGCCGCGTGTGTTGAGCCGTTTGAAAGGTTTGCTCGTTAATGCCGTGGCTTGGAATAGACAGCAGATAACTGAAGTTTCTACTAAGGAGATCATTCTGGGCACTCAGGATGGGCAGCTGTTTGAGATGGCCGTGGATGAGAAGGATAAGAGAGAGAAGTACATCAAGTTTTTGTTTGAATTAGAAGAACTTCCTGAAGCCTTCAAGGCTTTGCAGATGGAAACGGCCAACATAAGCAGTGGGATGAGGTACTATGTGATGGCTGTAACCCCTACTCGACTCTACTCGTTTACAGGGATTGGAACATTAGAATCTGTTTTTGCTAGTTATAAAGAACGAGCAGTTCATTTTATGGAACTTCCTGGTGAAATACCAAATAGTGAACTACATTTCTTTATAAAGCAACGAAGAGCGGTGCATTTTGCATGGTTATCAGGGACAGGAATTTATCATGGTGGCCTAAATTTTGGAGCTCAGCACAGTTATCCAAATGGCGATGAGAACTTTGTGGAGAACAAAGCACTCTTGGACTACTCAAAACTGAGTGATGGAACTGAAGCAGTCAAGCCTGGTTCGATGGCACTCTCTGAGTATCATTTCTTGCTTCTTATTGGGAATAAGGTTAAGGTTGTCAATCGGATAAGTGAACAAATCATTGAAGAGCTCCAGTTTGATATCACCTCAGATTCAGTTTCAAGGGGCATAATTGGACTTTGCAGTGATGCCTCTGCTAACGTTTTCTATGCATATGATCAAAATTCGATATTCCAGGTTTCTGTGATTGACGAAGGACGAGATATGTGGAAGGTTTACCTGGACTTGAAAGTCTATGCTGCAGCTTTAGCAAACTGTCGTGACCCTCTCCAGAGAGACCAAGTTTATTTAGTTCAGGCAGAATCTGCATTCACCGACAAGGAATATCTGCGAGCAGCATCATTCTACGCCAAAATCAATTATGTAATATCTTTTGAGGAGGTCACTTTGAAGTTTATTAGTATCAACGAACCGGAAGCTTTGAGGACGTTCTTGTTGCATAAGCTTGATAATCTTTCAAAGGATGATAAATGCCAAATAACGATGATATCAACATGGGCAACTGAGCTATATCTGGACAAGATAAATCGGCTGCTTTTGGAAGATGACACTGCTATAGAAAATCGTGACTCGGAGTATCACTCAGTCATTCAAGAATTCCGTGCTTTCATGAGCGATTGCAAGGATGAATTGGACGAGGCAACCACAGTGAAAATTCTGGAGAGTTATGGTCGGGTTGAGGAATTGGTATATTTTGCAAACTTGAAGGAGCAGTATGAAATTGTAGTTCTCCATTATATTCAGCAAGGGGAAGCAAAGAAAGCATTGGAAGTGCTCCAAAAATCTTCAGTTTCAGTTGAACTCCAGTATCAATTTGCGCCAGAACTTATTATGCTTGACGCATATGAAACCGTGGAATCATGGATGGCCAACAAAAATCTTAATCCAAGGAGATTAATTACTGCAATGATGCGTTACTCGAGCGGACCTCATGCAAAGAACGAGACACATGAGGTCATCAAATATCTTGAGTTTTGCGTCCACCGTCTGCATAACGAGGATCCAGGGATTCACAGTTTACTTCTCTCATTATATGCCAAGCAGGAAGATGACGGTGCCCTCCTCCGTTTTCTGCAATGCAAATTTGGGAAAGGACGAGAGAATGGTCCCGAATTTTTCTATGATCCCAAATATGCATTGCGCCTATGTCTCAAGGAAAGGAGAACCCGTGCCTGTGTCCATATATACAGCATGATGTCTATGCATGAAGAGGCAGTAGCCCTTGCTCTTCAGATTGATCCGGAACTTGCTATGGCTGAGGCTGATAAGGTCGAAGATGATGAAGACTTGAGAAAGAAGCTGTGGCTGATGGTTGCAAAGCATGTCGTCAAGCAGGAAAAGGGAGCTAAAAGGGAAAACATACGAAAAGCTATTGCCTTTCTCAAGGAAACTGATGGCCTTCTAAAGATTGAAGATATTTTGCCTTTCTTTCCGGACTTTGCCTTAATTGATGACTTCAAGGAAGCGATTTGCTCATCTCTCGAGGATTACAACAAGCAAATAGAACAACTGAAAGAGGAGATGAATGATGCCACACGTGGTGCAGATAACATTAGAAATGATATTAGTGCGCTAACTCAAAGATATGCCGTTATTGACCGCGACGAGGAATGTGGGGTTTGTAAACGTAAAATCTTGATGATGAGCGGTGATTTCAGAATGGCCCAGGGATATTCTTCAGCGGGACCATTGGCTCCTTTTTATGTCTTTCCTTGTGGGCACTCTTTCCATGCACAGTGCCTGATCACACACGTCACAAGCTGTGCACACGAAGAGCAAGCCGAGCATATACTCGATCTGCAGAAGCAACTGACATTGCTTGGAAGCGAAACCCGGAGGGATATAAATGGTAACCGATCTGATGAACCCATAACAAGCACAACAACTGCAGACAAGCTTCGATCAGAGCTAGATGATGCTATTGCCAGCGAATGCCCGTTCTGTGGAGAATTAATGATCAATGAGATCACTCTGCCTTTTATTAAACCTGAGGATTCACAGTATTCTACTTCATGGGACCTCCGATCAGAGACCAACTTAGCAAACCAGAGGACCATTTCTTTGCCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

988

Amino Acids

112.32

Weight (kDa)

5.19

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep3_Vps18 PF05131 8 - 360 9.2e-88 Pep3/Vps18/deep orange beta-propeller domain
VPS18_RING_C PF26148 865 - 951 6.6e-06 VPS18 RING C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12470
fragaria_vesca FvH4_6g44560 FvH4_6g44560
malus_domestica MD14G1065300.v1.1 MD17G1084700.v1.1
prunus_persica Prupe.3G231000_v2.0.a1
pyrus_communis pycom17g08190
rosa_chinensis RchiOBHm_Chr2g0161771
rosa_laevigata RLG00000021298
rosa_multiflora Rmu_sc0003662.1_g000015
rosa_roxburghii Rroxscaffold_2G00088620
rosa_rugosa Rorug02G0491800
rosa_samantha Rh2BG571500 Rh2DG580400
rosa_wichuraiana Rw2G046160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 630, 698
AasI GACNNNNNNGTC 1 cut(s) 1124
AccB1I GGYRCC 1 cut(s) 1949
AccBSI CCGCTC 3 cut(s) 713, 1818, 2541
AccII CGCG 2 cut(s) 307, 2496
AccIII TCCGGA 2 cut(s) 2134, 2326
AciI CCGC 6 cut(s) 305, 713, 1818, 2494, 2541, 2576
AclI AACGTT 1 cut(s) 1035
AclWI GGATC 6 cut(s) 12, 215, 1889, 1902, 2012, 2126
AcoI YGGCCR 3 cut(s) 429, 525, 1761
AcsI RAATTY 7 cut(s) 744, 763, 1057, 1490, 1548, 1976, 2006
AcuI CTGAAG 6 cut(s) 393, 516, 876, 1665, 2108, 2556
AcvI CACGTG 1 cut(s) 2432
AdeI CACNNNGTG 1 cut(s) 2435
AfaI GTAC 2 cut(s) 461, 551
AfiI CCNNNNNNNGG 3 cut(s) 351, 2500, 2837
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 3 cut(s) 74, 2429, 2644
AjiI CACGTC 1 cut(s) 2647
AjnI CCWGG 7 cut(s) 223, 661, 868, 1068, 1113, 1897, 2559
Alw21I GWGCWC 4 cut(s) 775, 966, 1671, 2662
Alw26I GTCTC 4 cut(s) 1164, 1832, 2048, 2918
Alw44I GTGCAC 1 cut(s) 2658
AlwI GGATC 6 cut(s) 12, 215, 1889, 1902, 2012, 2126
AlwNI CAGNNNCTG 3 cut(s) 254, 1199, 2635
Ama87I CYCGRG 3 cut(s) 38, 1813, 2375
Aor13HI TCCGGA 2 cut(s) 2134, 2326
AoxI GGCC 6 cut(s) 429, 525, 757, 1761, 2290, 2556
ApaLI GTGCAC 1 cut(s) 2658
ApeKI GCWGC 6 cut(s) 83, 415, 1133, 1136, 1229, 1426
ApoI RAATTY 7 cut(s) 744, 763, 1057, 1490, 1548, 1976, 2006
ArsI GACNNNNNNTTYG 1 cut(s) 2938
AseI ATTAAT 2 cut(s) 1790, 2846
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 3 cut(s) 1714, 2037, 2467
AspS9I GGNCC 6 cut(s) 1820, 2000, 2557, 2579, 2911, 2946
AsuC2I CCSGG 1 cut(s) 2728
AsuHPI GGTGA 4 cut(s) 677, 970, 1198, 2555
AvaI CYCGRG 3 cut(s) 38, 1813, 2375
AvaII GGWCC 5 cut(s) 1820, 2000, 2579, 2911, 2946
AxyI CCTNAGG 1 cut(s) 2883
BaeGI GKGCMC 4 cut(s) 404, 1954, 2616, 2662
BaeI ACNNNNGTAYC 2 cut(s) 1685, 1718
BalI TGGCCA 1 cut(s) 1763
BamHI GGATCC 1 cut(s) 1894
BanI GGYRCC 1 cut(s) 1949
BanII GRGCYC 2 cut(s) 775, 966
BbrPI CACGTG 1 cut(s) 2432
BbsI GAAGAC 1 cut(s) 2184
Bbv12I GWGCWC 4 cut(s) 775, 966, 1671, 2662
BbvCI CCTCAGC 1 cut(s) 2151
BbvI GCAGC 6 cut(s) 70, 427, 1120, 1148, 1241, 1413
BceAI ACGGC 5 cut(s) 303, 329, 416, 540, 2468
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 7 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561
BclI TGATCA 3 cut(s) 1051, 2637, 2850
BcnI CCSGG 1 cut(s) 2728
BcoDI GTCTC 4 cut(s) 1164, 1832, 2048, 2918
BfaI CTAG 2 cut(s) 624, 2804
BfmI CTRYAG 5 cut(s) 246, 1134, 1449, 2693, 2781
BfrI CTTAAG 1 cut(s) 299
BglI GCCNNNNNGGC 1 cut(s) 506
BglII AGATCT 1 cut(s) 31
BisI GCNGC 7 cut(s) 84, 305, 416, 1134, 1137, 1230, 1427
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 7 cut(s) 85, 306, 417, 1135, 1138, 1231, 1428
Bme1390I CCNGG 8 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561, 2728
Bme18I GGWCC 5 cut(s) 1820, 2000, 2579, 2911, 2946
BmeT110I CYCGRG 3 cut(s) 38, 1813, 2375
BmgBI CACGTC 1 cut(s) 2647
BmgT120I GGNCC 6 cut(s) 1820, 2000, 2557, 2579, 2911, 2946
BmiI GGNNCC 6 cut(s) 1896, 1951, 2002, 2580, 2589, 2912
BmrFI CCNGG 8 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561, 2728
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 5 cut(s) 1012, 1241, 1794, 2413, 2800
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 2184
BplI GAGNNNNNCTC 4 cut(s) 1460, 1492, 1807, 1839
BpmI CTGGAG 4 cut(s) 950, 1148, 1574, 1682
Bpu10I CCTNAGC 1 cut(s) 2151
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 4 cut(s) 1883, 2030, 2203, 2261
BpuMI CCSGG 1 cut(s) 2728
BsaAI YACGTR 1 cut(s) 2432
BsaBI GATNNNNATC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 1164, 2918
BsaJI CCNNGG 7 cut(s) 345, 432, 1746, 1781, 1898, 2559, 2560
BsaWI WCCGGW 4 cut(s) 132, 1306, 2134, 2326
BsaXI ACNNNNNCTCC 2 cut(s) 2047, 2077
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 2500, 2837
Bse1I ACTGG 4 cut(s) 193, 259, 967, 1699
Bse21I CCTNAGG 1 cut(s) 2883
Bse3DI GCAATG 6 cut(s) 235, 240, 1806, 1976, 2030, 2708
Bse8I GATNNNNATC 1 cut(s) 168
BseAI TCCGGA 2 cut(s) 2134, 2326
BseBI CCWGG 7 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561
BseDI CCNNGG 7 cut(s) 345, 432, 1746, 1781, 1898, 2559, 2560
BseGI GGATG 7 cut(s) 128, 415, 442, 549, 1363, 1525, 1764
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 351, 2500, 2837
BseMI GCAATG 6 cut(s) 235, 240, 1806, 1976, 2030, 2708
BseMII CTCAG 9 cut(s) 419, 788, 833, 879, 996, 1389, 1491, 2142, 2874
BseNI ACTGG 4 cut(s) 193, 259, 967, 1699
BseRI GAGGAG 4 cut(s) 279, 1286, 1946, 2426
BseSI GKGCMC 4 cut(s) 404, 1954, 2616, 2662
BseXI GCAGC 6 cut(s) 70, 427, 1120, 1148, 1241, 1413
BseYI CCCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 2457
Bsh1236I CGCG 2 cut(s) 307, 2496
BshFI GGCC 6 cut(s) 431, 527, 759, 1763, 2292, 2558
BshNI GGYRCC 1 cut(s) 1949
BsiHKAI GWGCWC 4 cut(s) 775, 966, 1671, 2662
BsiHKCI CYCGRG 3 cut(s) 38, 1813, 2375
BsiSI CCGG 5 cut(s) 133, 1307, 2135, 2327, 2728
BslFI GGGAC 4 cut(s) 751, 1986, 2592, 2924
BslI CCNNNNNNNGG 3 cut(s) 351, 2500, 2837
BsmAI GTCTC 4 cut(s) 1164, 1832, 2048, 2918
BsmFI GGGAC 4 cut(s) 751, 1986, 2592, 2924
BsmI GAATGC 2 cut(s) 1202, 2831
BsnI GGCC 6 cut(s) 431, 527, 759, 1763, 2292, 2558
Bso31I GGTCTC 2 cut(s) 1164, 2918
BsoBI CYCGRG 3 cut(s) 38, 1813, 2375
Bsp1286I GDGCHC 7 cut(s) 404, 775, 966, 1671, 1954, 2616, 2662
Bsp13I TCCGGA 2 cut(s) 2134, 2326
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 6 cut(s) 305, 713, 1818, 2494, 2541, 2576
BspANI GGCC 6 cut(s) 431, 527, 759, 1763, 2292, 2558
BspCNI CTCAG 9 cut(s) 418, 787, 834, 880, 995, 1390, 1490, 2143, 2875
BspEI TCCGGA 2 cut(s) 2134, 2326
BspFNI CGCG 2 cut(s) 307, 2496
BspHI TCATGA 1 cut(s) 1503
BspLI GGNNCC 6 cut(s) 1896, 1951, 2002, 2580, 2589, 2912
BspMAI CTGCAG 3 cut(s) 1138, 2697, 2785
BspPI GGATC 6 cut(s) 12, 215, 1889, 1902, 2012, 2126
BspQI GCTCTTC 4 cut(s) 703, 954, 2127, 2661
BspT107I GGYRCC 1 cut(s) 1949
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 2 cut(s) 1164, 2918
BsrBI CCGCTC 3 cut(s) 713, 1818, 2541
BsrDI GCAATG 6 cut(s) 235, 240, 1806, 1976, 2030, 2708
BsrI ACTGG 4 cut(s) 193, 259, 967, 1699
BssECI CCNNGG 7 cut(s) 345, 432, 1746, 1781, 1898, 2559, 2560
BssT1I CCWWGG 1 cut(s) 1781
Bst2UI CCWGG 7 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561
Bst6I CTCTTC 5 cut(s) 703, 954, 2097, 2127, 2661
BstAFI CTTAAG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstBAI YACGTR 1 cut(s) 2432
BstC8I GCNNGC 3 cut(s) 1227, 2673, 2821
BstDSI CCRYGG 3 cut(s) 345, 432, 1746
BstEII GGTNACC 1 cut(s) 2744
BstF5I GGATG 7 cut(s) 128, 415, 442, 549, 1363, 1525, 1764
BstFNI CGCG 2 cut(s) 307, 2496
BstHHI GCGC 3 cut(s) 1714, 2037, 2467
BstMAI GTCTC 4 cut(s) 1164, 1832, 2048, 2918
BstMWI GCNNNNNNNGC 6 cut(s) 304, 506, 1142, 1199, 1655, 2677
BstNI CCWGG 7 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561
BstNSI RCATGY 2 cut(s) 78, 2219
BstPI GGTNACC 1 cut(s) 2744
BstSCI CCNGG 8 cut(s) 223, 661, 868, 1068, 1113, 1897, 2559, 2726
BstSFI CTRYAG 5 cut(s) 246, 1134, 1449, 2693, 2781
BstSLI GKGCMC 4 cut(s) 404, 1954, 2616, 2662
BstUI CGCG 2 cut(s) 307, 2496
BstV1I GCAGC 6 cut(s) 70, 427, 1120, 1148, 1241, 1413
BstV2I GAAGAC 1 cut(s) 2184
BstX2I RGATCY 2 cut(s) 31, 1894
BstYI RGATCY 2 cut(s) 31, 1894
Bsu36I CCTNAGG 1 cut(s) 2883
BsuRI GGCC 6 cut(s) 431, 527, 759, 1763, 2292, 2558
BtgI CCRYGG 3 cut(s) 345, 432, 1746
BtgZI GCGATG 1 cut(s) 810
BtrI CACGTC 1 cut(s) 2647
BtsCI GGATG 7 cut(s) 128, 415, 442, 549, 1363, 1525, 1764
BtsI GCAGTG 3 cut(s) 544, 1024, 1443
BtsIMutI CAGTG 6 cut(s) 252, 544, 1024, 1443, 1548, 2636
Cac8I GCNNGC 3 cut(s) 1227, 2673, 2821
CaiI CAGNNNCTG 3 cut(s) 254, 1199, 2635
CciI TCATGA 1 cut(s) 1503
CfoI GCGC 3 cut(s) 1714, 2037, 2467
Cfr13I GGNCC 6 cut(s) 1820, 2000, 2557, 2579, 2911, 2946
CseI GACGC 2 cut(s) 1742, 1861
Csp6I GTAC 2 cut(s) 460, 550
CviQI GTAC 2 cut(s) 460, 550
DraIII CACNNNGTG 1 cut(s) 2435
DrdI GACNNNNNNGTC 1 cut(s) 1124
DseDI GACNNNNNNGTC 1 cut(s) 1124
EaeI YGGCCR 3 cut(s) 429, 525, 1761
Eam1104I CTCTTC 5 cut(s) 703, 954, 2097, 2127, 2661
EarI CTCTTC 5 cut(s) 703, 954, 2097, 2127, 2661
Ecl136II GAGCTC 2 cut(s) 773, 964
Eco130I CCWWGG 1 cut(s) 1781
Eco24I GRGCYC 2 cut(s) 775, 966
Eco31I GGTCTC 2 cut(s) 1164, 2918
Eco32I GATATC 2 cut(s) 976, 1383
Eco47I GGWCC 5 cut(s) 1820, 2000, 2579, 2911, 2946
Eco53kI GAGCTC 2 cut(s) 773, 964
Eco57I CTGAAG 6 cut(s) 393, 516, 876, 1665, 2108, 2556
Eco72I CACGTG 1 cut(s) 2432
Eco81I CCTNAGG 1 cut(s) 2883
Eco88I CYCGRG 3 cut(s) 38, 1813, 2375
Eco91I GGTNACC 1 cut(s) 2744
EcoICRI GAGCTC 2 cut(s) 773, 964
EcoO109I RGGNCCY 1 cut(s) 2911
EcoO65I GGTNACC 1 cut(s) 2744
EcoRI GAATTC 1 cut(s) 1490
EcoRII CCWGG 7 cut(s) 223, 661, 868, 1068, 1113, 1897, 2559
EcoRV GATATC 2 cut(s) 976, 1383
EcoT14I CCWWGG 1 cut(s) 1781
EcoT22I ATGCAT 3 cut(s) 1048, 2032, 2100
EcoT38I GRGCYC 2 cut(s) 775, 966
ErhI CCWWGG 1 cut(s) 1781
FaqI GGGAC 4 cut(s) 751, 1986, 2592, 2924
FauI CCCGC 1 cut(s) 2569
FauNDI CATATG 2 cut(s) 1048, 1738
FbaI TGATCA 3 cut(s) 1051, 2637, 2850
Fnu4HI GCNGC 7 cut(s) 84, 305, 416, 1134, 1137, 1230, 1427
FokI GGATG 7 cut(s) 135, 422, 449, 556, 1370, 1532, 1771
FriOI GRGCYC 2 cut(s) 775, 966
Fsp4HI GCNGC 7 cut(s) 84, 305, 416, 1134, 1137, 1230, 1427
FspBI CTAG 2 cut(s) 624, 2804
GlaI GCGC 3 cut(s) 1713, 2036, 2466
GluI GCNGC 7 cut(s) 84, 305, 416, 1134, 1137, 1230, 1427
GsaI CCCAGC 1 cut(s) 90
GsuI CTGGAG 4 cut(s) 950, 1148, 1574, 1682
HaeIII GGCC 6 cut(s) 431, 527, 759, 1763, 2292, 2558
HapII CCGG 5 cut(s) 133, 1307, 2135, 2327, 2728
HgaI GACGC 2 cut(s) 1742, 1861
HhaI GCGC 3 cut(s) 1714, 2037, 2467
Hin6I GCGC 3 cut(s) 1712, 2035, 2465
HinP1I GCGC 3 cut(s) 1712, 2035, 2465
HindIII AAGCTT 3 cut(s) 1311, 1337, 2789
HinfI GANTC 9 cut(s) 58, 579, 611, 986, 1196, 1463, 1751, 1903, 2888
HpaII CCGG 5 cut(s) 133, 1307, 2135, 2327, 2728
HphI GGTGA 4 cut(s) 677, 970, 1198, 2555
Hpy166II GTNNAC 8 cut(s) 591, 683, 947, 1111, 1876, 1913, 2519, 2660
Hpy8I GTNNAC 8 cut(s) 591, 683, 947, 1111, 1876, 1913, 2519, 2660
Hpy99I CGWCG 1 cut(s) 2501
HpyAV CCTTC 7 cut(s) 6, 436, 511, 1082, 1099, 1594, 2303
HpyCH4IV ACGT 5 cut(s) 1035, 1322, 2431, 2521, 2646
HpyF10VI GCNNNNNNNGC 6 cut(s) 304, 506, 1142, 1199, 1655, 2677
HpySE526I ACGT 5 cut(s) 1035, 1322, 2431, 2521, 2646
HspAI GCGC 3 cut(s) 1712, 2035, 2465
Kpn2I TCCGGA 2 cut(s) 2134, 2326
Ksp22I TGATCA 3 cut(s) 1051, 2637, 2850
LguI GCTCTTC 4 cut(s) 703, 954, 2127, 2661
LmnI GCTCC 8 cut(s) 193, 266, 770, 969, 1603, 1674, 2237, 2593
Lsp1109I GCAGC 6 cut(s) 70, 427, 1120, 1148, 1241, 1413
LweI GCATC 5 cut(s) 1012, 1241, 1794, 2413, 2800
MaeI CTAG 2 cut(s) 624, 2804
MaeII ACGT 5 cut(s) 1035, 1322, 2431, 2521, 2646
MaeIII GTNAC 8 cut(s) 250, 565, 1154, 1276, 1460, 1808, 2647, 2744
MbiI CCGCTC 3 cut(s) 713, 1818, 2541
MflI RGATCY 2 cut(s) 31, 1894
MhlI GDGCHC 7 cut(s) 404, 775, 966, 1671, 1954, 2616, 2662
MlsI TGGCCA 1 cut(s) 1763
MluNI TGGCCA 1 cut(s) 1763
MlyI GAGTC 2 cut(s) 573, 1457
MmeI TCCRAC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 1763
Mph1103I ATGCAT 3 cut(s) 1048, 2032, 2100
MroI TCCGGA 2 cut(s) 2134, 2326
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 1763
MseI TTAA 8 cut(s) 300, 339, 924, 1776, 1790, 2339, 2846, 2877
Msp20I TGGCCA 1 cut(s) 1763
MspA1I CMGCKG 2 cut(s) 418, 2576
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 5 cut(s) 133, 1307, 2135, 2327, 2728
MspR9I CCNGG 8 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561, 2728
Mva1269I GAATGC 2 cut(s) 1202, 2831
MvaI CCWGG 7 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561
MvnI CGCG 2 cut(s) 307, 2496
MwoI GCNNNNNNNGC 6 cut(s) 304, 506, 1142, 1199, 1655, 2677
NciI CCSGG 1 cut(s) 2728
NdeI CATATG 2 cut(s) 1048, 1738
NlaIV GGNNCC 6 cut(s) 1896, 1951, 2002, 2580, 2589, 2912
NmeAIII GCCGAG 1 cut(s) 2701
NmuCI GTSAC 5 cut(s) 250, 1154, 1276, 1460, 2647
NsiI ATGCAT 3 cut(s) 1048, 2032, 2100
NspI RCATGY 2 cut(s) 78, 2219
PaeR7I CTCGAG 3 cut(s) 38, 1813, 2375
PagI TCATGA 1 cut(s) 1503
PasI CCCWGGG 1 cut(s) 2560
PciI ACATGT 1 cut(s) 74
PciSI GCTCTTC 4 cut(s) 703, 954, 2127, 2661
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 2 cut(s) 1202, 2831
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 7 cut(s) 58, 611, 986, 1196, 1751, 1903, 2888
PkrI GCNGC 7 cut(s) 85, 306, 417, 1135, 1138, 1231, 1428
PleI GAGTC 2 cut(s) 573, 1457
PmaCI CACGTG 1 cut(s) 2432
PmlI CACGTG 1 cut(s) 2432
PpsI GAGTC 2 cut(s) 573, 1457
Ppu21I YACGTR 1 cut(s) 2432
PpuMI RGGWCCY 1 cut(s) 2911
PscI ACATGT 1 cut(s) 74
PshBI ATTAAT 2 cut(s) 1790, 2846
PsiI TTATAA 2 cut(s) 630, 698
Psp124BI GAGCTC 2 cut(s) 775, 966
Psp1406I AACGTT 1 cut(s) 1035
Psp5II RGGWCCY 1 cut(s) 2911
Psp6I CCWGG 7 cut(s) 223, 661, 868, 1068, 1113, 1897, 2559
PspCI CACGTG 1 cut(s) 2432
PspEI GGTNACC 1 cut(s) 2744
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 7 cut(s) 223, 661, 868, 1068, 1113, 1897, 2559
PspN4I GGNNCC 6 cut(s) 1896, 1951, 2002, 2580, 2589, 2912
PspPI GGNCC 6 cut(s) 1820, 2000, 2557, 2579, 2911, 2946
PspPPI RGGWCCY 1 cut(s) 2911
PspXI VCTCGAGB 1 cut(s) 1813
PstI CTGCAG 3 cut(s) 1138, 2697, 2785
PstNI CAGNNNCTG 3 cut(s) 254, 1199, 2635
PsuI RGATCY 2 cut(s) 31, 1894
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 2 cut(s) 461, 551
RsaNI GTAC 2 cut(s) 460, 550
SacI GAGCTC 2 cut(s) 775, 966
SapI GCTCTTC 4 cut(s) 703, 954, 2127, 2661
SaqAI TTAA 8 cut(s) 300, 339, 924, 1776, 1790, 2339, 2846, 2877
SatI GCNGC 7 cut(s) 84, 305, 416, 1134, 1137, 1230, 1427
Sau96I GGNCC 6 cut(s) 1820, 2000, 2557, 2579, 2911, 2946
SchI GAGTC 2 cut(s) 573, 1457
ScrFI CCNGG 8 cut(s) 225, 663, 870, 1070, 1115, 1899, 2561, 2728
SduI GDGCHC 7 cut(s) 404, 775, 966, 1671, 1954, 2616, 2662
SfaNI GCATC 5 cut(s) 1012, 1241, 1794, 2413, 2800
SfcI CTRYAG 5 cut(s) 246, 1134, 1449, 2693, 2781
Sfr274I CTCGAG 3 cut(s) 38, 1813, 2375
SinI GGWCC 5 cut(s) 1820, 2000, 2579, 2911, 2946
SlaI CTCGAG 3 cut(s) 38, 1813, 2375
SmlI CTYRAG 8 cut(s) 38, 299, 1813, 1862, 2045, 2182, 2276, 2375
SmoI CTYRAG 8 cut(s) 38, 299, 1813, 1862, 2045, 2182, 2276, 2375
SsiI CCGC 6 cut(s) 305, 713, 1818, 2494, 2541, 2576
SspMI CTAG 2 cut(s) 624, 2804
SstI GAGCTC 2 cut(s) 775, 966
StyD4I CCNGG 8 cut(s) 223, 661, 868, 1068, 1113, 1897, 2559, 2726
StyI CCWWGG 1 cut(s) 1781
TaiI ACGT 5 cut(s) 1038, 1325, 2434, 2524, 2649
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 7 cut(s) 58, 611, 986, 1196, 1751, 1903, 2888
Tru1I TTAA 8 cut(s) 300, 339, 924, 1776, 1790, 2339, 2846, 2877
Tru9I TTAA 8 cut(s) 300, 339, 924, 1776, 1790, 2339, 2846, 2877
TscAI CASTG 6 cut(s) 259, 544, 1024, 1450, 1548, 2636
TseFI GTSAC 5 cut(s) 250, 1154, 1276, 1460, 2647
TseI GCWGC 6 cut(s) 83, 415, 1133, 1136, 1229, 1426
Tsp45I GTSAC 5 cut(s) 250, 1154, 1276, 1460, 2647
TspGWI ACGGA 2 cut(s) 1484, 1949
TspRI CASTG 6 cut(s) 259, 544, 1024, 1450, 1548, 2636
Vha464I CTTAAG 1 cut(s) 299
VneI GTGCAC 1 cut(s) 2658
VpaK11BI GGWCC 5 cut(s) 1820, 2000, 2579, 2911, 2946
VspI ATTAAT 2 cut(s) 1790, 2846
XapI RAATTY 7 cut(s) 744, 763, 1057, 1490, 1548, 1976, 2006
XceI RCATGY 2 cut(s) 78, 2219
XhoI CTCGAG 3 cut(s) 38, 1813, 2375
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 2 cut(s) 624, 2804
Zsp2I ATGCAT 3 cut(s) 1048, 2032, 2100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.