Rroxscaffold_2G00088620

vacuolar protein sorting-associated protein 18 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
10530992 .. 10540598
9607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088620.1

Sequence Viewer

Length: 2925 bp
ATGGATTCGGCGAGGCAGGTTTTCACGGTGGACCTTCTAGAAAGGTACGCCGCGAAAGGCCGCGGAGTCATCACGTGTATGGCGGCCGGAAACGACGTCATTGTGCTCGGAACTAGTAAAGGATGGATAATCCGGCACGATTTTGGGGTCGGCGATTCGTTCGATATTGATCTCTCTGCGGGTCGTCCCGGGGAGCATTCAATTCATAGAGTTTTTGTTGATCCTGGAGGGAGCCACTGTATCTCCAGCATTACTGGTACCGGGGGTGCTGATACTTTCTATACTCATGCGAAATGGAGCAAGCCGCGTCCTTTGGCCAAGTTGAAGGGTCTTGTTGTGAATGCTGTTGCCTGGAATAGACAGCAGATAACAGAAGTTTCGACAAAGGAAGTTATTCTCGGTACTGACAATGGCCAACTTTATGAGATTGCTGTGGATGAGAAGGATAAGAAGGAGAAGTATGTGAAGTTTCTGTATGAACTAACTGAACTTCCAGAGGCTTTTATGAGTTTGCAGATGGAAACTGCGACAATTCTGAATGGAACTAGATACTATGTGATGGCTGTTACTCCTACACGACTCTATTCCTATACGGGAATTGGATCGTTGGATGCTATTTTTGCTAGTTACTTGGAGCATCCGGTGCGTTTCATGGAACTTCCTGGTGAAATACCTAACAGGCAAGTAGAAGAGACATTCTTCCTTCTAGATTCTGAGTTTCTTACTATTATTGTGCTTACCGGTTCTTCAACTGGAGATGAAAATTTTGTGGAGAACAAGGCTCTTCTGGCATATTCAAAATTGTCTGAGAGTACTGAAGTTGCGGTGCCCAGTTCTATGGCCGTTTCGGAATTTCATTTCTTGCTTCTTATCGGGAATAAGGTTAAGGTTGTGAATAGAATAAGTGAGCAAATTTTTGAGGAACTTCAGTTTGATCAAACATCCGAATCAGCTTCAAGGGGTATAATTGGATTATGTAGTGATGCCACAGCTGGACTGTTCTATGCTTATGACCAGAACTCTGTATTTCAGGTTTCTGTTAATGATGAAGGCCGAGATATGTGGAAAGTTTATCTGGACATGAAAGAGTATGCTGCTGCTTTGGCAAATTGTCGTGACCCACTTCAGAGGGACCAAGTATATTTAGTACAGGCTGAGGCTGCATTTACCTCAAAAGATTATCTCAGAGCAGCATCTTTCTATGCAAAGATAAACTACATATTATCATTCGAGGAGATCACTCTGAAGTTTATCACTGTCAATGAACAGGACGCTTTGAGAACCTTTTTGTTACGGAAACTTGACTGTCTTGCAAAGGATGACAAGTGCCAAATAACCATGATTTCAACGTGGGCAACTGAATTGTACTTGGATAAGATAAATCGCCTACTATTAGAAGATGACACTGCATTGGAAAATCGGAATTCAGAGTATAAATCGATTATTAAAGAGTTTCGTGCATTTCTGAGTGACTCCAAGGATGTATTGGATGAAGCAACCACAATGAGATTATTAGAAAGTTATGGTCGAGTTGAAGAGTTGGTATTTTTTGCTAGTCTGAAGGAACAATATGAAATTGTAGTGCACCATTATATTCAGCAAGGAGAGGCGAAGAAAGCATTGGAGGTTCTTCAAAAACCTTCTGTTGCTATTGATCTTCAGTATAAGTTTGCTCCTGACCTAATCATGCTTGATGCATATGAAGCTGTGGAGTCATGGATGGCGACGAACAACCTCAACCCTAGGAAACTCATTCCTGCAATGATGCGCTATTCGAGTGAACCACATGCAAAAAATGAAACACATGAAGTCATCAAATACTTGGAATATTGTGTTCACCGTTTGCACAATGAGGACCCTGGAGTTCACAACTTGCTTTTATCACTATATGCCAAGCAGGAAGATGATAGTGCACTTTTGCGTTTCCTACAATTTAAGTTTGGAAAAGGACGGGAAAGTGGCCCTGAATTCTTCTACGATCCCAAGTATGCTTTACGCCTTTGCCTTAAAGAAAAGCGAATGCGTGCCTGCGTTCATATATACAGTATGATGTCCATGCATGAAGAAGCAGTTGCTCTCGCCCTACAGGTTGATCCTGAGCTTGCTATGGCTGAAGCTGACAAGGTTGAAGACGATGAGGACTTGAGAAAGAAGCTCTGGCTCATGGTTGCGAAGCATGTAATAGAACAGGAGAAGGGAGCTAAGAGGGAGAACATACGGAAGGCAATAGCGTTTCTTAAAGAAACAGATGGCCTTTTAAAGATAGAGGATATATTACCATTCTTTCCGGACTTTGCCCTGATTGATGACTTTAAGGAGGCAATTTGCTCATCATTAGAGGATTACAATAATCAAATCGAACAACTGAAGCAAGAGATGAATGATGCGACACATGGTGCTGACAATATCAGAAATGACATTAGTGCCCTTGCTCAAAGATATGCTGTGATTGATCGTGATGAAGAATGTGGGGTGTGTCGGCGTAAAATTTTAACTGTTGGTAGGGATTATCAGATGACTAGGGGCTATTCATCAGTAGGGCAAATGGCCCCCTTTTATGTCTTTCCTTGTGGACATGCCTTCCATGCACAATGCCTGATTGCCCATGTTACCCGTAGCACAAATGAAGCTCAAGCAGAGTATATTCTGGATCTGCAGAAGCAACTCACTCTATTGGATGGAGAAGCTAGGAAGGATTCAAATGGTCCCTTGACTGACGAGACCATAACAAGCATGGCCCCTGTAGACAAGCTCCGATCACAGTTGGATGATGCTGTGGCCAGCGAATGCCCATTTTGTGGGGACTTAATGATCCGCGAGATCTCTCTGCCTTTCATTCTTCACGAGGAACAATATCAGAGTACTTCATGGGATATACAGTCGCGTAATCTTGGAAACCAGAGGAGTCTTTCTTTGACTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

974

Amino Acids

110.59

Weight (kDa)

5.05

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep3_Vps18 PF05131 18 - 347 1.7e-67 Pep3/Vps18/deep orange beta-propeller domain
Clathrin PF00637 598 - 731 7.8e-08 Region in Clathrin and VPS
VPS18_RING_C PF26148 852 - 939 2e-06 VPS18 RING C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12470
fragaria_vesca FvH4_6g44560 FvH4_6g44560
malus_domestica MD14G1065300.v1.1 MD17G1084700.v1.1
prunus_persica Prupe.3G231000_v2.0.a1
pyrus_communis pycom17g08190
rosa_chinensis RchiOBHm_Chr2g0161771
rosa_laevigata RLG00000021298
rosa_multiflora Rmu_sc0003662.1_g000015
rosa_roxburghii Rroxscaffold_2G00088620
rosa_rugosa Rorug02G0491800
rosa_samantha Rh2BG571500 Rh2DG580400
rosa_wichuraiana Rw2G046160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 7
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 2 cut(s) 257, 826
AccB7I CCANNNNNTGG 1 cut(s) 2798
AccI GTMKAC 1 cut(s) 2745
AccII CGCG 5 cut(s) 53, 63, 307, 2817, 2884
AccIII TCCGGA 1 cut(s) 2287
AciI CCGC 8 cut(s) 51, 61, 63, 83, 179, 305, 824, 2815
AclWI GGATC 6 cut(s) 215, 610, 1973, 2087, 2658, 2806
AcoI YGGCCR 5 cut(s) 84, 315, 412, 840, 2778
AcsI RAATTY 6 cut(s) 763, 851, 912, 1423, 1967, 2487
AcuI CTGAAG 8 cut(s) 837, 911, 1109, 1265, 1580, 1643, 2133, 2387
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 2396
AfaI GTAC 7 cut(s) 47, 259, 403, 814, 1149, 1367, 2863
AfiI CCNNNNNNNGG 1 cut(s) 2798
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 740
AhlI ACTAGT 1 cut(s) 113
AjnI CCWGG 4 cut(s) 223, 350, 661, 1858
AjuI GAANNNNNNNTTGG 2 cut(s) 1604, 1636
Alw21I GWGCWC 3 cut(s) 108, 1587, 1915
Alw26I GTCTC 2 cut(s) 686, 2714
Alw44I GTGCAC 2 cut(s) 1583, 1911
AlwI GGATC 6 cut(s) 215, 610, 1973, 2087, 2658, 2806
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 2287
ApaLI GTGCAC 2 cut(s) 1583, 1911
ApeKI GCWGC 4 cut(s) 1094, 1097, 1160, 1190
ApoI RAATTY 6 cut(s) 763, 851, 912, 1423, 1967, 2487
AsiGI ACCGGT 1 cut(s) 740
Asp700I GAANNNNTTC 1 cut(s) 393
Asp718I GGTACC 1 cut(s) 257
AspA2I CCTAGG 1 cut(s) 1742
AspLEI GCGC 1 cut(s) 1770
AspS9I GGNCC 7 cut(s) 31, 1132, 1855, 1961, 2548, 2705, 2737
AsuC2I CCSGG 3 cut(s) 189, 190, 262
AsuHPI GGTGA 2 cut(s) 677, 1829
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 4 cut(s) 31, 1132, 1855, 2705
AvrII CCTAGG 1 cut(s) 1742
BaeGI GKGCMC 4 cut(s) 831, 1587, 1915, 2428
BalI TGGCCA 3 cut(s) 317, 414, 2780
BanI GGYRCC 2 cut(s) 257, 826
BauI CACGAG 1 cut(s) 2843
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 2136
Bbv12I GWGCWC 3 cut(s) 108, 1587, 1915
BbvCI CCTCAGC 1 cut(s) 1155
BbvI GCAGC 4 cut(s) 1081, 1084, 1147, 1202
BccI CCATC 6 cut(s) 117, 511, 553, 1714, 2243, 2672
BceAI ACGGC 1 cut(s) 827
BciT130I CCWGG 4 cut(s) 225, 352, 663, 1860
BclI TGATCA 1 cut(s) 934
BcnI CCSGG 3 cut(s) 189, 190, 262
BcoDI GTCTC 2 cut(s) 686, 2714
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 9 cut(s) 38, 114, 546, 624, 707, 1554, 1743, 2520, 2688
BfmI CTRYAG 3 cut(s) 2084, 2654, 2742
BfuAI ACCTGC 1 cut(s) 7
BglII AGATCT 1 cut(s) 2820
BisI GCNGC 8 cut(s) 51, 61, 84, 305, 1095, 1098, 1161, 1191
BlnI CCTAGG 1 cut(s) 1742
BlsI GCNGC 8 cut(s) 52, 62, 85, 306, 1096, 1099, 1162, 1192
BmcAI AGTACT 2 cut(s) 814, 2863
Bme1390I CCNGG 7 cut(s) 189, 190, 225, 262, 352, 663, 1860
Bme18I GGWCC 4 cut(s) 31, 1132, 1855, 2705
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 7 cut(s) 31, 1132, 1855, 1961, 2548, 2705, 2737
BmiI GGNNCC 8 cut(s) 233, 259, 828, 1133, 1857, 2550, 2707, 2739
BmrFI CCNGG 7 cut(s) 189, 190, 225, 262, 352, 663, 1860
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 8 cut(s) 601, 646, 973, 1202, 1684, 1755, 2374, 2761
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 2136
BpmI CTGGAG 4 cut(s) 229, 246, 774, 1881
Bpu10I CCTNAGC 2 cut(s) 1155, 2097
BpuEI CTTGAG 2 cut(s) 2164, 2616
BpuMI CCSGG 3 cut(s) 189, 190, 262
Bsa29I ATCGAT 1 cut(s) 1439
BsaAI YACGTR 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 2714
BsaJI CCNNGG 7 cut(s) 61, 188, 189, 261, 1476, 1742, 1858
BsaWI WCCGGW 3 cut(s) 640, 740, 2287
BsaXI ACNNNNNCTCC 4 cut(s) 223, 227, 253, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 2798
Bse118I RCCGGY 1 cut(s) 740
Bse1I ACTGG 3 cut(s) 259, 757, 831
Bse3DI GCAATG 1 cut(s) 1767
Bse8I GATNNNNATC 1 cut(s) 168
BseAI TCCGGA 1 cut(s) 2287
BseBI CCWGG 4 cut(s) 225, 352, 663, 1860
BseCI ATCGAT 1 cut(s) 1439
BseDI CCNNGG 7 cut(s) 61, 188, 189, 261, 1476, 1742, 1858
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 2798
BseMI GCAATG 1 cut(s) 1767
BseMII CTCAG 6 cut(s) 705, 798, 1146, 1198, 1457, 2088
BseNI ACTGG 3 cut(s) 259, 757, 831
BseRI GAGGAG 2 cut(s) 1247, 2917
BseSI GKGCMC 4 cut(s) 831, 1587, 1915, 2428
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 4 cut(s) 1081, 1084, 1147, 1202
Bsh1236I CGCG 5 cut(s) 53, 63, 307, 2817, 2884
Bsh1285I CGRYCG 1 cut(s) 87
BshNI GGYRCC 2 cut(s) 257, 826
BshTI ACCGGT 1 cut(s) 740
BshVI ATCGAT 1 cut(s) 1439
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 3 cut(s) 108, 1587, 1915
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 7 cut(s) 87, 133, 189, 261, 641, 741, 2288
BslFI GGGAC 4 cut(s) 171, 1145, 2691, 2816
BslI CCNNNNNNNGG 1 cut(s) 2798
BsmAI GTCTC 2 cut(s) 686, 2714
BsmFI GGGAC 4 cut(s) 171, 1145, 2691, 2816
BsmI GAATGC 4 cut(s) 196, 346, 2025, 2792
Bso31I GGTCTC 1 cut(s) 2714
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 5 cut(s) 108, 831, 1587, 1915, 2428
Bsp13I TCCGGA 1 cut(s) 2287
BspACI CCGC 8 cut(s) 51, 61, 63, 83, 179, 305, 824, 2815
BspCNI CTCAG 6 cut(s) 706, 799, 1147, 1197, 1458, 2089
BspDI ATCGAT 1 cut(s) 1439
BspEI TCCGGA 1 cut(s) 2287
BspFNI CGCG 5 cut(s) 53, 63, 307, 2817, 2884
BspLI GGNNCC 8 cut(s) 233, 259, 828, 1133, 1857, 2550, 2707, 2739
BspMAI CTGCAG 1 cut(s) 2658
BspMI ACCTGC 1 cut(s) 7
BspPI GGATC 6 cut(s) 215, 610, 1973, 2087, 2658, 2806
BspQI GCTCTTC 1 cut(s) 789
BspT107I GGYRCC 2 cut(s) 257, 826
BspTNI GGTCTC 1 cut(s) 2714
BsrDI GCAATG 1 cut(s) 1767
BsrFI RCCGGY 1 cut(s) 740
BsrI ACTGG 3 cut(s) 259, 757, 831
BssAI RCCGGY 1 cut(s) 740
BssECI CCNNGG 7 cut(s) 61, 188, 189, 261, 1476, 1742, 1858
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 2843
BssT1I CCWWGG 2 cut(s) 1476, 1742
Bst2BI CACGAG 1 cut(s) 2843
Bst2UI CCWGG 4 cut(s) 225, 352, 663, 1860
Bst6I CTCTTC 3 cut(s) 684, 789, 1530
BstACI GRCGYC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 5 cut(s) 302, 2025, 2029, 2103, 2782
BstDEI CTNAG 7 cut(s) 714, 807, 1155, 1184, 1466, 2097, 2202
BstDSI CCRYGG 1 cut(s) 61
BstFNI CGCG 5 cut(s) 53, 63, 307, 2817, 2884
BstHHI GCGC 1 cut(s) 1770
BstMAI GTCTC 2 cut(s) 686, 2714
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 8 cut(s) 620, 643, 788, 1103, 1160, 1616, 1703, 2585
BstNI CCWGG 4 cut(s) 225, 352, 663, 1860
BstNSI RCATGY 3 cut(s) 1790, 2180, 2579
BstSCI CCNGG 7 cut(s) 187, 188, 223, 260, 350, 661, 1858
BstSFI CTRYAG 3 cut(s) 2084, 2654, 2742
BstSLI GKGCMC 4 cut(s) 831, 1587, 1915, 2428
BstUI CGCG 5 cut(s) 53, 63, 307, 2817, 2884
BstV1I GCAGC 4 cut(s) 1081, 1084, 1147, 1202
BstV2I GAAGAC 1 cut(s) 2136
BstX2I RGATCY 2 cut(s) 2650, 2820
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 2 cut(s) 2650, 2820
BstZI CGGCCG 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 1439
BsuTUI ATCGAT 1 cut(s) 1439
BtgI CCRYGG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 1404
BtsIMutI CAGTG 3 cut(s) 235, 1254, 1404
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 5 cut(s) 302, 2025, 2029, 2103, 2782
CfoI GCGC 1 cut(s) 1770
Cfr10I RCCGGY 1 cut(s) 740
Cfr13I GGNCC 7 cut(s) 31, 1132, 1855, 1961, 2548, 2705, 2737
Cfr42I CCGCGG 1 cut(s) 64
Cfr9I CCCGGG 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 1439
CseI GACGC 2 cut(s) 296, 1280
Csp6I GTAC 7 cut(s) 46, 258, 402, 813, 1148, 1366, 2862
CspAI ACCGGT 1 cut(s) 740
CviQI GTAC 7 cut(s) 46, 258, 402, 813, 1148, 1366, 2862
DdeI CTNAG 7 cut(s) 714, 807, 1155, 1184, 1466, 2097, 2202
DraI TTTAAA 1 cut(s) 2259
DraIII CACNNNGTG 1 cut(s) 2396
EaeI YGGCCR 5 cut(s) 84, 315, 412, 840, 2778
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 3 cut(s) 684, 789, 1530
EarI CTCTTC 3 cut(s) 684, 789, 1530
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 1476, 1742
Eco31I GGTCTC 1 cut(s) 2714
Eco47I GGWCC 4 cut(s) 31, 1132, 1855, 2705
Eco52I CGGCCG 1 cut(s) 84
Eco57I CTGAAG 8 cut(s) 837, 911, 1109, 1265, 1580, 1643, 2133, 2387
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 1855
EcoRI GAATTC 2 cut(s) 1423, 1967
EcoRII CCWGG 4 cut(s) 223, 350, 661, 1858
EcoT14I CCWWGG 2 cut(s) 1476, 1742
EcoT22I ATGCAT 2 cut(s) 1699, 2061
ErhI CCWWGG 2 cut(s) 1476, 1742
FaqI GGGAC 4 cut(s) 171, 1145, 2691, 2816
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 1699
FbaI TGATCA 1 cut(s) 934
FblI GTMKAC 1 cut(s) 2745
Fnu4HI GCNGC 8 cut(s) 51, 61, 84, 305, 1095, 1098, 1161, 1191
Fsp4HI GCNGC 8 cut(s) 51, 61, 84, 305, 1095, 1098, 1161, 1191
FspBI CTAG 9 cut(s) 38, 114, 546, 624, 707, 1554, 1743, 2520, 2688
GlaI GCGC 1 cut(s) 1769
GluI GCNGC 8 cut(s) 51, 61, 84, 305, 1095, 1098, 1161, 1191
GsuI CTGGAG 4 cut(s) 229, 246, 774, 1881
HapII CCGG 7 cut(s) 87, 133, 189, 261, 641, 741, 2288
HgaI GACGC 2 cut(s) 296, 1280
HhaI GCGC 1 cut(s) 1770
Hin1I GRCGYC 1 cut(s) 96
Hin6I GCGC 1 cut(s) 1768
HinP1I GCGC 1 cut(s) 1768
HpaII CCGG 7 cut(s) 87, 133, 189, 261, 641, 741, 2288
HphI GGTGA 2 cut(s) 677, 1829
Hpy166II GTNNAC 8 cut(s) 31, 1585, 1781, 1837, 1867, 1913, 2573, 2746
Hpy8I GTNNAC 8 cut(s) 31, 1585, 1781, 1837, 1867, 1913, 2573, 2746
Hpy99I CGWCG 2 cut(s) 98, 1729
HpyCH4IV ACGT 3 cut(s) 74, 96, 1349
HpyF10VI GCNNNNNNNGC 8 cut(s) 620, 643, 788, 1103, 1160, 1616, 1703, 2585
HpyF3I CTNAG 7 cut(s) 714, 807, 1155, 1184, 1466, 2097, 2202
HpySE526I ACGT 3 cut(s) 74, 96, 1349
Hsp92I GRCGYC 1 cut(s) 96
HspAI GCGC 1 cut(s) 1768
Kpn2I TCCGGA 1 cut(s) 2287
KpnI GGTACC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 934
KspI CCGCGG 1 cut(s) 64
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 7 cut(s) 193, 231, 297, 634, 1678, 2198, 2757
Lsp1109I GCAGC 4 cut(s) 1081, 1084, 1147, 1202
LweI GCATC 8 cut(s) 601, 646, 973, 1202, 1684, 1755, 2374, 2761
MaeI CTAG 9 cut(s) 38, 114, 546, 624, 707, 1554, 1743, 2520, 2688
MaeII ACGT 3 cut(s) 74, 96, 1349
MaeIII GTNAC 6 cut(s) 565, 626, 1115, 1290, 1469, 2608
MflI RGATCY 2 cut(s) 2650, 2820
MhlI GDGCHC 5 cut(s) 108, 831, 1587, 1915, 2428
MlsI TGGCCA 3 cut(s) 317, 414, 2780
MluNI TGGCCA 3 cut(s) 317, 414, 2780
MlyI GAGTC 5 cut(s) 75, 573, 1466, 1721, 2914
MmeI TCCRAC 2 cut(s) 588, 2745
Mox20I TGGCCA 3 cut(s) 317, 414, 2780
Mph1103I ATGCAT 2 cut(s) 1699, 2061
MroI TCCGGA 1 cut(s) 2287
MroXI GAANNNNTTC 1 cut(s) 393
MscI TGGCCA 3 cut(s) 317, 414, 2780
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 3 cut(s) 317, 414, 2780
MspA1I CMGCKG 2 cut(s) 63, 992
MspI CCGG 7 cut(s) 87, 133, 189, 261, 641, 741, 2288
MspR9I CCNGG 7 cut(s) 189, 190, 225, 262, 352, 663, 1860
Mva1269I GAATGC 4 cut(s) 196, 346, 2025, 2792
MvaI CCWGG 4 cut(s) 225, 352, 663, 1860
MvnI CGCG 5 cut(s) 53, 63, 307, 2817, 2884
MwoI GCNNNNNNNGC 8 cut(s) 620, 643, 788, 1103, 1160, 1616, 1703, 2585
NciI CCSGG 3 cut(s) 189, 190, 262
NdeI CATATG 1 cut(s) 1699
NlaIV GGNNCC 8 cut(s) 233, 259, 828, 1133, 1857, 2550, 2707, 2739
NmeAIII GCCGAG 1 cut(s) 1079
NmuCI GTSAC 2 cut(s) 1115, 1469
NsiI ATGCAT 2 cut(s) 1699, 2061
NspI RCATGY 3 cut(s) 1790, 2180, 2579
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 4 cut(s) 196, 346, 2025, 2792
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 5 cut(s) 5, 155, 710, 947, 2696
PflMI CCANNNNNTGG 1 cut(s) 2798
PfoI TCCNGGA 1 cut(s) 223
PinAI ACCGGT 1 cut(s) 740
PkrI GCNGC 8 cut(s) 52, 62, 85, 306, 1096, 1099, 1162, 1192
PleI GAGTC 5 cut(s) 74, 573, 1466, 1720, 2913
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
PpsI GAGTC 5 cut(s) 74, 573, 1466, 1720, 2913
Ppu21I YACGTR 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 1855
Psp5II RGGWCCY 1 cut(s) 1855
Psp6I CCWGG 4 cut(s) 223, 350, 661, 1858
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 4 cut(s) 223, 350, 661, 1858
PspN4I GGNNCC 8 cut(s) 233, 259, 828, 1133, 1857, 2550, 2707, 2739
PspPI GGNCC 7 cut(s) 31, 1132, 1855, 1961, 2548, 2705, 2737
PspPPI RGGWCCY 1 cut(s) 1855
PstI CTGCAG 1 cut(s) 2658
PsuI RGATCY 2 cut(s) 2650, 2820
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 7 cut(s) 47, 259, 403, 814, 1149, 1367, 2863
RsaNI GTAC 7 cut(s) 46, 258, 402, 813, 1148, 1366, 2862
RseI CAYNNNNRTG 1 cut(s) 77
SacII CCGCGG 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 789
SatI GCNGC 8 cut(s) 51, 61, 84, 305, 1095, 1098, 1161, 1191
Sau96I GGNCC 7 cut(s) 31, 1132, 1855, 1961, 2548, 2705, 2737
ScaI AGTACT 2 cut(s) 814, 2863
SchI GAGTC 5 cut(s) 75, 573, 1466, 1721, 2914
ScrFI CCNGG 7 cut(s) 189, 190, 225, 262, 352, 663, 1860
SduI GDGCHC 5 cut(s) 108, 831, 1587, 1915, 2428
SfaNI GCATC 8 cut(s) 601, 646, 973, 1202, 1684, 1755, 2374, 2761
SfcI CTRYAG 3 cut(s) 2084, 2654, 2742
Sfr303I CCGCGG 1 cut(s) 64
SgrBI CCGCGG 1 cut(s) 64
SinI GGWCC 4 cut(s) 31, 1132, 1855, 2705
SmaI CCCGGG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 2143, 2631
SmoI CTYRAG 2 cut(s) 2143, 2631
SpeI ACTAGT 1 cut(s) 113
SsiI CCGC 8 cut(s) 51, 61, 63, 83, 179, 305, 824, 2815
SspI AATATT 1 cut(s) 1829
SspMI CTAG 9 cut(s) 38, 114, 546, 624, 707, 1554, 1743, 2520, 2688
StyD4I CCNGG 7 cut(s) 187, 188, 223, 260, 350, 661, 1858
StyI CCWWGG 2 cut(s) 1476, 1742
TaiI ACGT 3 cut(s) 77, 99, 1352
TaqI TCGA 7 cut(s) 162, 380, 1230, 1439, 1528, 1775, 2358
TatI WGTACW 4 cut(s) 812, 1147, 1365, 2861
TauI GCSGC 4 cut(s) 53, 63, 86, 307
TfiI GAWTC 5 cut(s) 5, 155, 710, 947, 2696
TscAI CASTG 3 cut(s) 242, 1261, 1411
TseFI GTSAC 2 cut(s) 1115, 1469
TseI GCWGC 4 cut(s) 1094, 1097, 1160, 1190
Tsp45I GTSAC 2 cut(s) 1115, 1469
TspGWI ACGGA 2 cut(s) 1309, 2233
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 3 cut(s) 242, 1261, 1411
Van91I CCANNNNNTGG 1 cut(s) 2798
VneI GTGCAC 2 cut(s) 1583, 1911
VpaK11BI GGWCC 4 cut(s) 31, 1132, 1855, 2705
XapI RAATTY 6 cut(s) 763, 851, 912, 1423, 1967, 2487
XbaI TCTAGA 2 cut(s) 37, 706
XceI RCATGY 3 cut(s) 1790, 2180, 2579
XcmI CCANNNNNNNNNTGG 2 cut(s) 1483, 2731
XmaI CCCGGG 1 cut(s) 188
XmaJI CCTAGG 1 cut(s) 1742
XmiI GTMKAC 1 cut(s) 2745
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 9 cut(s) 38, 114, 546, 624, 707, 1554, 1743, 2520, 2688
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 2 cut(s) 814, 2863
Zsp2I ATGCAT 2 cut(s) 1699, 2061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.