Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010061

Physical Location & Seq

Genomic Coordinates Reverse (-)

4392438 .. 4394454

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTCGGCTACTTTCTCTGTGGCCAAACCATCTCTTCAGGGTTTTTCTGAGTTCTCAGGACTTCGAAACTCCTCTGCTCTTCCCTTTGCCAAGAGATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAGGTAGCCATCAATGGGTTCGGTAGGATTGGTAGGAACTTCTTGAGGTGTTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCGTTGTCATTAACGACACTGGTGGTGTTAAACAAGCATCACATCTCCTCAAATACGACTCAACTCTTGGAATCTTTGACGCTGATGTCAAACCTTCAGGAGACTCAGCTCTCTCTGTTGATGGAAAGATCATCAAGATTGTATCTGATCGTAACCCATCTAATCTCCCCTGGGGGGAACTAGGCATTGACTTAGTTATCGAAGGAACCGGAGTGTTTGTTGACAGAGACGGTGCTGGGAAGCACCTTCAGGCTGGAGCCAAGAAGGTTCTTATCACTGCACCTGGAAAAGGTGACATCCCAACTTATGTCGTTGGTGTCAATGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAAGGTTGTTAGATGCGAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCAGCTTTGAACATTGTTCCAACATCTACAGGAGCAGCCAAAGCTGTGGCTCTTGTGCTTCCTAACCTCAAAGGAAAACTTAACGGAATTGCATTGCGTGTGCCAACTCCAAACGTTTCAGTGGTTGACTTAGTCGTGCAAGTCTCCAAGAAAACTTTTGCTGAAGAAGTCAATGCTGCTTTCAGAGATGCAGCTGAGAAAGAGCTTAAAGGTATCCTTGACGTCTGTGATGAGCCTCTTGTCTCTGTTGACTTCAGGTGCTCTGATGTATCCTCCACTATTGATTCTTCCCTCACAATGGTTATGGGAGATGATATGGTTAAAGTGATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGAGTCGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

399

Amino Acids

42.85

Weight (kDa)

8.16

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	16 - 118	1.7e-31	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	172 - 328	1e-67	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12900 AT1G12900 AT1G12900 AT1G12900 AT3G26650
fragaria_vesca	FvH4_6g54460
malus_domestica	MD09G1000800.v1.1 MD17G1003500.v1.1
prunus_persica	Prupe.3G315500_v2.0.a1
pyrus_communis	pycom111g00050 pycom17g00030
rosa_chinensis	RchiOBHm_Chr2g0176741
rosa_laevigata	RLG00000022441
rosa_multiflora	Rmu_ssc0000468.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076200
rosa_rugosa	Rorug02G0598200
rosa_samantha	Rh2AG675500 Rh2BG686800 Rh2CG650100 Rh2DG701000
rosa_wichuraiana	Rw2G055440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	1017
AccB7I	CCANNNNNTGG	1 cut(s)	1191
AclI	AACGTT	1 cut(s)	906
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	5 cut(s)	23, 357, 509, 975, 1030
AcyI	GRCGYC	1 cut(s)	1014
AfaI	GTAC	2 cut(s)	649, 712
AfiI	CCNNNNNNNGG	5 cut(s)	210, 451, 566, 1090, 1191
AgsI	TTSAA	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	446, 559
AluBI	AGCT	5 cut(s)	386, 797, 836, 986, 997
AluI	AGCT	5 cut(s)	386, 797, 836, 986, 997
Alw21I	GWGCWC	1 cut(s)	1055
Alw26I	GTCTC	5 cut(s)	372, 498, 665, 940, 1039
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	2 cut(s)	24, 186
ApeKI	GCWGC	5 cut(s)	791, 794, 827, 968, 983
ApoI	RAATTY	1 cut(s)	692
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AsuHPI	GGTGA	3 cut(s)	190, 581, 752
AsuII	TTCGAA	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	1055
BbvI	GCAGC	5 cut(s)	803, 806, 839, 955, 995
BccI	CCATC	4 cut(s)	40, 212, 392, 442
BciT130I	CCWGG	2 cut(s)	448, 561
BciVI	GTATCC	3 cut(s)	158, 1016, 1072
BcoDI	GTCTC	5 cut(s)	372, 498, 665, 940, 1039
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	819
BfuI	GTATCC	3 cut(s)	158, 1016, 1072
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	5 cut(s)	792, 795, 828, 969, 984
BlsI	GCNGC	5 cut(s)	793, 796, 829, 970, 985
Bme1390I	CCNGG	2 cut(s)	448, 561
BmiI	GGNNCC	2 cut(s)	484, 535
BmrFI	CCNGG	2 cut(s)	448, 561
BmsI	GCATC	3 cut(s)	323, 748, 970
BpmI	CTGGAG	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	1014
BsaJI	CCNNGG	3 cut(s)	183, 446, 447
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	5 cut(s)	210, 451, 566, 1090, 1191
Bse1I	ACTGG	3 cut(s)	301, 742, 1196
Bse3DI	GCAATG	4 cut(s)	153, 163, 643, 884
BseBI	CCWGG	2 cut(s)	448, 561
BseDI	CCNNGG	3 cut(s)	183, 446, 447
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	5 cut(s)	210, 451, 566, 1090, 1191
BseMI	GCAATG	4 cut(s)	153, 163, 643, 884
BseMII	CTCAG	4 cut(s)	42, 72, 396, 978
BseNI	ACTGG	3 cut(s)	301, 742, 1196
BseRI	GAGGAG	3 cut(s)	64, 258, 314
BseXI	GCAGC	5 cut(s)	803, 806, 839, 955, 995
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	26, 188
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiSI	CCGG	1 cut(s)	486
BslI	CCNNNNNNNGG	5 cut(s)	210, 451, 566, 1090, 1191
BsmAI	GTCTC	5 cut(s)	372, 498, 665, 940, 1039
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	26, 188
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
BspANI	GGCC	2 cut(s)	26, 188
BspCNI	CTCAG	4 cut(s)	43, 71, 395, 979
BspLI	GGNNCC	2 cut(s)	484, 535
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	67
BsrDI	GCAATG	4 cut(s)	153, 163, 643, 884
BsrI	ACTGG	3 cut(s)	301, 742, 1196
BssECI	CCNNGG	3 cut(s)	183, 446, 447
BssMI	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
BssNI	GRCGYC	1 cut(s)	1014
Bst2UI	CCWGG	2 cut(s)	448, 561
Bst4CI	ACNGT	3 cut(s)	509, 659, 770
Bst6I	CTCTTC	2 cut(s)	42, 87
BstACI	GRCGYC	1 cut(s)	1014
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	7 cut(s)	51, 58, 382, 469, 776, 922, 987
BstEII	GGTNACC	2 cut(s)	178, 740
BstENI	CCTNNNNNAGG	1 cut(s)	564
BstF5I	GGATG	1 cut(s)	573
BstKTI	GATC	6 cut(s)	101, 408, 427, 630, 702, 775
BstMAI	GTCTC	5 cut(s)	372, 498, 665, 940, 1039
BstMBI	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	791, 833
BstNI	CCWGG	2 cut(s)	448, 561
BstPI	GGTNACC	2 cut(s)	178, 740
BstSCI	CCNGG	2 cut(s)	446, 559
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	5 cut(s)	803, 806, 839, 955, 995
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	2 cut(s)	695, 838
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	3 cut(s)	158, 1016, 1072
BsuRI	GGCC	2 cut(s)	26, 188
BtsCI	GGATG	1 cut(s)	573
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	4 cut(s)	294, 552, 735, 918
Cac8I	GCNNGC	1 cut(s)	763
CseI	GACGC	2 cut(s)	365, 630
Csp6I	GTAC	2 cut(s)	648, 711
CviAII	CATG	2 cut(s)	251, 617
CviQI	GTAC	2 cut(s)	648, 711
DdeI	CTNAG	7 cut(s)	51, 58, 382, 469, 776, 922, 987
DpnI	GATC	6 cut(s)	100, 407, 426, 629, 701, 774
DpnII	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	42, 87
EarI	CTCTTC	2 cut(s)	42, 87
Eco57I	CTGAAG	5 cut(s)	23, 357, 509, 975, 1030
Eco91I	GGTNACC	2 cut(s)	178, 740
EcoNI	CCTNNNNNAGG	1 cut(s)	564
EcoO65I	GGTNACC	2 cut(s)	178, 740
EcoRII	CCWGG	2 cut(s)	446, 559
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	2 cut(s)	254, 620
FaiI	YATR	8 cut(s)	252, 585, 618, 704, 733, 1097, 1109, 1131
FalI	AAGNNNNNCTT	4 cut(s)	855, 887, 993, 1025
FatI	CATG	2 cut(s)	250, 616
Fnu4HI	GCNGC	5 cut(s)	792, 795, 828, 969, 984
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	792, 795, 828, 969, 984
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	5 cut(s)	792, 795, 828, 969, 984
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	26, 188
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	2 cut(s)	365, 630
Hin1I	GRCGYC	1 cut(s)	1014
Hin1II	CATG	2 cut(s)	254, 620
HincII	GTYRAC	3 cut(s)	499, 919, 1042
HindII	GTYRAC	3 cut(s)	499, 919, 1042
HinfI	GANTC	6 cut(s)	263, 335, 348, 380, 1076, 1158
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	3 cut(s)	190, 581, 752
Hpy166II	GTNNAC	3 cut(s)	499, 919, 1042
Hpy188I	TCNGA	5 cut(s)	52, 109, 424, 977, 1057
Hpy188III	TCNNGA	6 cut(s)	60, 238, 272, 375, 412, 683
Hpy8I	GTNNAC	3 cut(s)	499, 919, 1042
HpyAV	CCTTC	5 cut(s)	133, 381, 473, 533, 535
HpyCH4III	ACNGT	3 cut(s)	509, 659, 770
HpyCH4IV	ACGT	2 cut(s)	906, 1014
HpyCH4V	TGCA	5 cut(s)	146, 557, 884, 931, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	791, 833
HpyF3I	CTNAG	7 cut(s)	51, 58, 382, 469, 776, 922, 987
HpySE526I	ACGT	2 cut(s)	906, 1014
Hsp92I	GRCGYC	1 cut(s)	1014
Hsp92II	CATG	2 cut(s)	254, 620
Kzo9I	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	3 cut(s)	533, 670, 824
Lsp1109I	GCAGC	5 cut(s)	803, 806, 839, 955, 995
LweI	GCATC	3 cut(s)	323, 748, 970
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	2 cut(s)	906, 1014
MaeIII	GTNAC	5 cut(s)	178, 428, 569, 740, 1145
MalI	GATC	6 cut(s)	100, 407, 426, 629, 701, 774
MboI	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
MboII	GAAGA	7 cut(s)	29, 74, 93, 96, 632, 968, 1071
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	1055
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	2 cut(s)	692, 879
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	4 cut(s)	257, 329, 374, 1167
MmeI	TCCRAC	1 cut(s)	836
MnlI	CCTC	9 cut(s)	85, 178, 234, 279, 335, 869, 1038, 1075, 1094
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	5 cut(s)	288, 306, 873, 999, 1113
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	2 cut(s)	448, 561
MvaI	CCWGG	2 cut(s)	448, 561
MwoI	GCNNNNNNNGC	2 cut(s)	791, 833
NdeII	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
NlaIII	CATG	2 cut(s)	254, 620
NlaIV	GGNNCC	2 cut(s)	484, 535
NmuCI	GTSAC	3 cut(s)	178, 569, 740
NspV	TTCGAA	1 cut(s)	67
PasI	CCCWGGG	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PfeI	GAWTC	2 cut(s)	348, 1076
PflFI	GACNNNGTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	1191
PkrI	GCNGC	5 cut(s)	793, 796, 829, 970, 985
PleI	GAGTC	4 cut(s)	257, 329, 374, 1166
PpsI	GAGTC	4 cut(s)	257, 329, 374, 1166
Psp1406I	AACGTT	1 cut(s)	906
Psp6I	CCWGG	2 cut(s)	446, 559
PspEI	GGTNACC	2 cut(s)	178, 740
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	446, 559
PspN4I	GGNNCC	2 cut(s)	484, 535
PsuI	RGATCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	986
RsaI	GTAC	2 cut(s)	649, 712
RsaNI	GTAC	2 cut(s)	648, 711
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	5 cut(s)	288, 306, 873, 999, 1113
SatI	GCNGC	5 cut(s)	792, 795, 828, 969, 984
Sau3AI	GATC	6 cut(s)	98, 405, 424, 627, 699, 772
SchI	GAGTC	4 cut(s)	257, 329, 374, 1167
ScrFI	CCNGG	2 cut(s)	448, 561
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	3 cut(s)	323, 748, 970
SfcI	CTRYAG	1 cut(s)	819
SfuI	TTCGAA	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	692, 879
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	446, 559
TaaI	ACNGT	3 cut(s)	509, 659, 770
TaiI	ACGT	2 cut(s)	909, 1017
TaqI	TCGA	2 cut(s)	67, 477
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	692, 879
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	348, 1076
Tru1I	TTAA	5 cut(s)	288, 306, 873, 999, 1113
Tru9I	TTAA	5 cut(s)	288, 306, 873, 999, 1113
TscAI	CASTG	4 cut(s)	301, 559, 742, 918
TseFI	GTSAC	3 cut(s)	178, 569, 740
TseI	GCWGC	5 cut(s)	791, 794, 827, 968, 983
Tsp45I	GTSAC	3 cut(s)	178, 569, 740
TspDTI	ATGAA	2 cut(s)	633, 1152
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	4 cut(s)	301, 559, 742, 918
Tth111I	GACNNNGTC	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	1191
XagI	CCTNNNNNAGG	1 cut(s)	564
XapI	RAATTY	1 cut(s)	692
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.