Prupe.3G315500_v2.0.a1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010061
Physical Location & Seq
Reverse (-)
27235272 .. 27237824
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G315500.1

Sequence Viewer

Length: 1212 bp
ATGGCTTCGGCTATTCTTTCTGTGGCCAAACCATCTCTTCAGGCAAATGGAAAGGGATTTGCAGAATTCTCAGGTCTCCGGACCTCATCAGCTTGCCTTCCTTTTGGAAGGAAGACCTCAGACGATTTGTTTTCAGTCATTTCCTTCCAGACCTCTGCTGTGGGAAGCAGCGGAGGATACAAAAAAGGGATAGCGGAGGCGAAGCTAAAGGTGGCTATAAATGGATTCGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGGCGCAAGGACTCCCCTCTTGATGTCGTTGTCATCAACGACACTGGAGGCGTGAAGCAGGCCTCCCACCTCCTCAAGTACGACTCTACACTTGGAATCTTCGATGCTGATGTCAAGCCCGCTGGTGATAATGGCATCTCCGTTGACGGCAAGGTCATCAAGGTCGTGTCTAGCCGCAATCCCCTCGACCTGCCTTGGAAGGACTTGGAGATTGACCTAGTGATAGAAGGCACTGGTGTGTTTGTGGATAGGGAGGGTGCAGGCAAGCACCTACAGGCAGGGGCCAAGAAGGTGCTTATCACTGCCCCTGGAAAGGGCGACATCCCCACCTATGTGGTCGGGGTCAATGCTGACGCCTACAGCCCAGATGAAACCATCATTAGCAATGCTTCTTGCACCACCAACTGCCTTGCCCCCTTCGTCAAGGTCCTCGATCAAAAGTTCGGCATCATCAAGGGCACCATGACCACCACACACTCGTACACGGGTGACCAGAGGCTACTTGATGCCAGCCACCGCGACCTAAGGCGTGCACGAGCTGCTGCTCTGAATATCGTTCCCACTTCAACAGGTGCAGCAAAGGCCGTGGCTCTAGTCCTTCCAAGTCTAAAAGGCAAGCTAAATGGCATTGCCCTGCGTGTGCCCACCCCAAATGTGTCTGTGGTCGATCTTGTTGTCCAAGTCACTAAGAAGACCTTTGCAGAAGAAGTGAATGCTGCTTTCAGAGACAGTTCTGCAAAGGAGCTCGCAGGTATCCTTTCTGTTTGTGATGAGCCCCTTGTTTCTGTCGATTTTCGGTGCACAGATGTCTCCTCCACAGTTGACTCATCATTGACAATGGTCATGGGAGATGACATGGTCAAGGTCATTGCTTGGTACGACAACGAGTGGGGTTACTCACAAAGGGTCGTTGATTTGGCTGACATCGTTGCCAACAACTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

404

Amino Acids

42.84

Weight (kDa)

8.39

Isoelectric Point (pI)

25.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12900 AT1G12900 AT1G12900 AT1G12900 AT3G26650
fragaria_vesca FvH4_6g54460
malus_domestica MD09G1000800.v1.1 MD17G1003500.v1.1
prunus_persica Prupe.3G315500_v2.0.a1
pyrus_communis pycom111g00050 pycom17g00030
rosa_chinensis RchiOBHm_Chr2g0176741
rosa_laevigata RLG00000022441
rosa_multiflora Rmu_ssc0000468.1_g000003
rosa_roxburghii Rroxscaffold_2G00076200
rosa_rugosa Rorug02G0598200
rosa_samantha Rh2AG675500 Rh2BG686800 Rh2CG650100 Rh2DG701000
rosa_wichuraiana Rw2G055440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
Acc36I ACCTGC 2 cut(s) 462, 1004
AccB1I GGYRCC 1 cut(s) 722
AccB7I CCANNNNNTGG 1 cut(s) 1203
AccII CGCG 1 cut(s) 783
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 5 cut(s) 171, 194, 384, 439, 781
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 618
AfaI GTAC 3 cut(s) 344, 746, 1142
AfiI CCNNNNNNNGG 3 cut(s) 577, 578, 1203
AgsI TTSAA 1 cut(s) 831
AjnI CCWGG 1 cut(s) 571
AleI CACNNNNGTG 2 cut(s) 500, 596
AluBI AGCT 5 cut(s) 92, 205, 803, 883, 1009
AluI AGCT 5 cut(s) 92, 205, 803, 883, 1009
Alw21I GWGCWC 3 cut(s) 799, 1011, 1067
Alw26I GTCTC 3 cut(s) 80, 984, 1078
Alw44I GTGCAC 2 cut(s) 795, 1063
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 4 cut(s) 24, 324, 546, 846
ApaLI GTGCAC 2 cut(s) 795, 1063
ApeKI GCWGC 5 cut(s) 168, 803, 806, 839, 980
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 3 cut(s) 81, 546, 691
AsuHPI GGTGA 2 cut(s) 401, 764
AvaII GGWCC 2 cut(s) 81, 691
AxyI CCTNAGG 1 cut(s) 788
BaeGI GKGCMC 4 cut(s) 725, 799, 909, 1067
BalI TGGCCA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 722
BanII GRGCYC 2 cut(s) 1011, 1041
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 2 cut(s) 119, 962
Bbv12I GWGCWC 3 cut(s) 799, 1011, 1067
BbvI GCAGC 5 cut(s) 180, 790, 793, 851, 967
BccI CCATC 2 cut(s) 40, 647
BceAI ACGGC 2 cut(s) 427, 833
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 1 cut(s) 573
BciVI GTATCC 2 cut(s) 170, 1028
BcoDI GTCTC 3 cut(s) 80, 984, 1078
BfaI CTAG 3 cut(s) 435, 482, 857
BfmI CTRYAG 2 cut(s) 536, 622
BfuAI ACCTGC 2 cut(s) 462, 1004
BfuI GTATCC 2 cut(s) 170, 1028
BisI GCNGC 6 cut(s) 169, 439, 804, 807, 840, 981
BlsI GCNGC 6 cut(s) 170, 440, 805, 808, 841, 982
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 2 cut(s) 81, 691
BmgT120I GGNCC 3 cut(s) 81, 546, 691
BmiI GGNNCC 2 cut(s) 547, 724
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 4 cut(s) 358, 408, 720, 760
BoxI GACNNNNGTC 1 cut(s) 1103
BpiI GAAGAC 2 cut(s) 119, 962
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 271, 323
BsaHI GRCGYC 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 458, 571, 849
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 577, 578, 1203
Bse1I ACTGG 3 cut(s) 313, 502, 1208
Bse21I CCTNAGG 1 cut(s) 788
Bse3DI GCAATG 3 cut(s) 655, 891, 1131
BseAI TCCGGA 1 cut(s) 78
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 458, 571, 849
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 3 cut(s) 577, 578, 1203
BseMI GCAATG 3 cut(s) 655, 891, 1131
BseMII CTCAG 2 cut(s) 84, 132
BseNI ACTGG 3 cut(s) 313, 502, 1208
BseRI GAGGAG 2 cut(s) 326, 1066
BseSI GKGCMC 4 cut(s) 725, 799, 909, 1067
BseXI GCAGC 5 cut(s) 180, 790, 793, 851, 967
BsgI GTGCAG 2 cut(s) 543, 858
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 4 cut(s) 26, 326, 548, 848
BshNI GGYRCC 1 cut(s) 722
BsiHKAI GWGCWC 3 cut(s) 799, 1011, 1067
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 577, 578, 1203
BsmAI GTCTC 3 cut(s) 80, 984, 1078
BsmI GAATGC 1 cut(s) 982
BsnI GGCC 4 cut(s) 26, 326, 548, 848
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 6 cut(s) 725, 799, 909, 1011, 1041, 1067
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 697, 931
BspACI CCGC 5 cut(s) 171, 194, 384, 439, 781
BspANI GGCC 4 cut(s) 26, 326, 548, 848
BspCNI CTCAG 2 cut(s) 83, 131
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 547, 724
BspMI ACCTGC 2 cut(s) 462, 1004
BspT107I GGYRCC 1 cut(s) 722
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 3 cut(s) 655, 891, 1131
BsrI ACTGG 3 cut(s) 313, 502, 1208
BssECI CCNNGG 3 cut(s) 458, 571, 849
BssMI GATC 2 cut(s) 697, 931
BssNI GRCGYC 1 cut(s) 618
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 995, 1084
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 803
BstDEI CTNAG 4 cut(s) 70, 118, 788, 951
BstDSI CCRYGG 1 cut(s) 849
BstEII GGTNACC 1 cut(s) 752
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 1 cut(s) 783
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 700, 934
BstMAI GTCTC 3 cut(s) 80, 984, 1078
BstMBI GATC 2 cut(s) 697, 931
BstMWI GCNNNNNNNGC 2 cut(s) 803, 845
BstNI CCWGG 1 cut(s) 573
BstPAI GACNNNNGTC 1 cut(s) 1103
BstPI GGTNACC 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 536, 622
BstSLI GKGCMC 4 cut(s) 725, 799, 909, 1067
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 5 cut(s) 180, 790, 793, 851, 967
BstV2I GAAGAC 2 cut(s) 119, 962
BstXI CCANNNNNNTGG 1 cut(s) 598
Bsu36I CCTNAGG 1 cut(s) 788
BsuI GTATCC 2 cut(s) 170, 1028
BsuRI GGCC 4 cut(s) 26, 326, 548, 848
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 1 cut(s) 585
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 3 cut(s) 306, 495, 564
BveI ACCTGC 2 cut(s) 462, 1004
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 81, 546, 691
CseI GACGC 1 cut(s) 626
Csp6I GTAC 3 cut(s) 343, 745, 1141
CspCI CAANNNNNGTGG 2 cut(s) 831, 866
CviAII CATG 4 cut(s) 263, 727, 1108, 1120
CviQI GTAC 3 cut(s) 343, 745, 1141
DdeI CTNAG 4 cut(s) 70, 118, 788, 951
DpnI GATC 2 cut(s) 699, 933
DpnII GATC 2 cut(s) 697, 931
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 458
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 2 cut(s) 1011, 1041
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 81, 691
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 788
Eco91I GGTNACC 1 cut(s) 752
EcoICRI GAGCTC 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 691
EcoO65I GGTNACC 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 2 cut(s) 1011, 1041
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 4 cut(s) 266, 730, 1111, 1123
FaiI YATR 6 cut(s) 218, 264, 597, 728, 1109, 1121
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FatI CATG 4 cut(s) 262, 726, 1107, 1119
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 6 cut(s) 169, 439, 804, 807, 840, 981
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 2 cut(s) 1011, 1041
Fsp4HI GCNGC 6 cut(s) 169, 439, 804, 807, 840, 981
FspBI CTAG 3 cut(s) 435, 482, 857
GlaI GCGC 1 cut(s) 269
GluI GCNGC 6 cut(s) 169, 439, 804, 807, 840, 981
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 4 cut(s) 26, 326, 548, 848
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 4 cut(s) 266, 730, 1111, 1123
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 2 cut(s) 409, 1087
HindII GTYRAC 2 cut(s) 409, 1087
HinfI GANTC 5 cut(s) 225, 275, 347, 360, 1088
HpaII CCGG 1 cut(s) 79
HphI GGTGA 2 cut(s) 401, 764
Hpy166II GTNNAC 5 cut(s) 409, 747, 797, 1065, 1087
Hpy188I TCNGA 4 cut(s) 121, 230, 813, 989
Hpy188III TCNNGA 4 cut(s) 79, 148, 250, 284
Hpy8I GTNNAC 5 cut(s) 409, 747, 797, 1065, 1087
HpyAV CCTTC 9 cut(s) 102, 107, 154, 234, 457, 485, 547, 691, 872
HpyCH4III ACNGT 2 cut(s) 995, 1084
HpyCH4V TGCA 8 cut(s) 62, 524, 660, 797, 839, 965, 1001, 1065
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 845
HpyF3I CTNAG 4 cut(s) 70, 118, 788, 951
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 4 cut(s) 266, 730, 1111, 1123
HspAI GCGC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 697, 931
LmnI GCTCC 1 cut(s) 1006
Lsp1109I GCAGC 5 cut(s) 180, 790, 793, 851, 967
LweI GCATC 4 cut(s) 358, 408, 720, 760
MaeI CTAG 3 cut(s) 435, 482, 857
MaeIII GTNAC 3 cut(s) 752, 946, 1157
MalI GATC 2 cut(s) 699, 933
MboI GATC 2 cut(s) 697, 931
MboII GAAGA 6 cut(s) 29, 124, 243, 355, 967, 980
MhlI GDGCHC 6 cut(s) 725, 799, 909, 1011, 1041, 1067
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 65, 234
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 3 cut(s) 269, 341, 1082
Mox20I TGGCCA 1 cut(s) 26
MroI TCCGGA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 500, 596
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 2 cut(s) 171, 386
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 982
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 2 cut(s) 803, 845
NdeII GATC 2 cut(s) 697, 931
NlaIII CATG 4 cut(s) 266, 730, 1111, 1123
NlaIV GGNNCC 2 cut(s) 547, 724
NmuCI GTSAC 2 cut(s) 752, 946
OliI CACNNNNGTG 2 cut(s) 500, 596
PceI AGGCCT 1 cut(s) 326
PctI GAATGC 1 cut(s) 982
PfeI GAWTC 2 cut(s) 225, 360
PflFI GACNNNGTC 1 cut(s) 1121
PflMI CCANNNNNTGG 1 cut(s) 1203
PkrI GCNGC 6 cut(s) 170, 440, 805, 808, 841, 982
PleI GAGTC 3 cut(s) 269, 341, 1082
PpsI GAGTC 3 cut(s) 269, 341, 1082
PpuMI RGGWCCY 1 cut(s) 691
PshAI GACNNNNGTC 1 cut(s) 1103
Psp124BI GAGCTC 1 cut(s) 1011
Psp5II RGGWCCY 1 cut(s) 691
Psp6I CCWGG 1 cut(s) 571
PspEI GGTNACC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 547, 724
PspPI GGNCC 3 cut(s) 81, 546, 691
PspPPI RGGWCCY 1 cut(s) 691
PsyI GACNNNGTC 1 cut(s) 1121
RsaI GTAC 3 cut(s) 344, 746, 1142
RsaNI GTAC 3 cut(s) 343, 745, 1141
RseI CAYNNNNRTG 2 cut(s) 500, 596
SacI GAGCTC 1 cut(s) 1011
SatI GCNGC 6 cut(s) 169, 439, 804, 807, 840, 981
Sau3AI GATC 2 cut(s) 697, 931
Sau96I GGNCC 3 cut(s) 81, 546, 691
SchI GAGTC 3 cut(s) 269, 341, 1082
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 6 cut(s) 725, 799, 909, 1011, 1041, 1067
SfaNI GCATC 4 cut(s) 358, 408, 720, 760
SfcI CTRYAG 2 cut(s) 536, 622
SinI GGWCC 2 cut(s) 81, 691
SmiMI CAYNNNNRTG 2 cut(s) 500, 596
SmlI CTYRAG 2 cut(s) 250, 338
SmoI CTYRAG 2 cut(s) 250, 338
Sse9I AATT 2 cut(s) 65, 234
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 5 cut(s) 171, 194, 384, 439, 781
SspMI CTAG 3 cut(s) 435, 482, 857
SstI GAGCTC 1 cut(s) 1011
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 995, 1084
TaqI TCGA 5 cut(s) 366, 450, 696, 930, 1053
TasI AATT 2 cut(s) 65, 234
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 2 cut(s) 225, 360
TscAI CASTG 3 cut(s) 313, 502, 571
TseFI GTSAC 2 cut(s) 752, 946
TseI GCWGC 5 cut(s) 168, 803, 806, 839, 980
Tsp45I GTSAC 2 cut(s) 752, 946
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 3 cut(s) 313, 502, 571
Tth111I GACNNNGTC 1 cut(s) 1121
Van91I CCANNNNNTGG 1 cut(s) 1203
VneI GTGCAC 2 cut(s) 795, 1063
VpaK11BI GGWCC 2 cut(s) 81, 691
XapI RAATTY 1 cut(s) 65
XspI CTAG 3 cut(s) 435, 482, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.