pycom17g00030

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010061
Physical Location & Seq
Forward (+)
33337 .. 36596
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00030.5

Sequence Viewer

Length: 1161 bp
ATGTCTTCGGCTATGCTTTCTGTGGCCAAACCATCTCTTCAGGCCAATGGAAAGGGATTAGCAGAATTCTCAGGTCTCCGTACCTCATCAGCTTGCCTTCCTTTCGGAAAGAAGACCTCAGACGATTTATTCTCAGTCATTACCTTCCAGACCTCTGCTTTGGGAAGCAACGGAGGATACAAAAAAGGAGTAACGGAGGCGAAGCTAAAGGTGGCAATAAATGGGTTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGACGCAAGGACTCGCCTCTTGATGTCATTGCCATCAACGACACTGGAGGCGTCAAGCAGGCATCCCACCTCCTCAAGTATGACTCTACCCTCGGTATCTTTGATGCTGATGTCAAGCCCGTTGGGGATAATGGCCTCTCCGTTGATGGCAAGATTGTCAAGGTCGTGTCTAGCCGCAACCCCCTAGACCTGCCCTGGAAGGAGGGCGCAGGCAAGCACCTCCTGGCAGGGGCCAAGAAGGTACTTATCACTGCCCCTGGAAAGGGTGACATCCCCACCTATGTGGTCGGAGTCAATGCTGACGCTTACAACCCCGATGAAACCATTATTAGCAATGCTTCTTGCACCACCAACTGCCTTGCCCCCTTCGTCAAGGTCCTTGACCAGAAATTTGGCATCATCAAGGGTACCATGACTACCACGCATTCCTACACTGGTGACCAGAGGCTACTTGATGCCAGCCACCGTGACCTAAGGCGTGCACGGGCTGCTGCTCTCAACATTGTTCCCACCTCCACAGGTGCAGCAAAGGCCGTGGCCCTAGTTCTTCCAAGTCTGAAGGGCAAGCTAAATGGCATTGCCCTGCGTGTGCCCACCCCAAACGTGTCGGTGGTGGACCTTGTTGTCCAAGTCACTAAGAAGACCTTTGCAGAAGAGGTGAACGCTGCTTTCAGAGACAGCGCAGAGAAGGAGCTTGCAGGTATCCTTTCTGTTTGTGACGAGCCCCTTGTCTCAGTCGATTTTAGGTGCACAGATGTCTCCTCCACAGTCGACTCCTCATTGACAATGGTAATGGGCGATGACATGGTCAAGGTCATTGCTTGGTACGACAACGAGTGGGGTTACTCCCAAAGGGTTGTTGATTTGGCTGACATTGTCGCCAACAACTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

387

Amino Acids

41.08

Weight (kDa)

8.86

Isoelectric Point (pI)

23.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12900 AT1G12900 AT1G12900 AT1G12900 AT3G26650
fragaria_vesca FvH4_6g54460
malus_domestica MD09G1000800.v1.1 MD17G1003500.v1.1
prunus_persica Prupe.3G315500_v2.0.a1
pyrus_communis pycom111g00050 pycom17g00030
rosa_chinensis RchiOBHm_Chr2g0176741
rosa_laevigata RLG00000022441
rosa_multiflora Rmu_ssc0000468.1_g000003
rosa_roxburghii Rroxscaffold_2G00076200
rosa_rugosa Rorug02G0598200
rosa_samantha Rh2AG675500 Rh2BG686800 Rh2CG650100 Rh2DG701000
rosa_wichuraiana Rw2G055440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 887
Acc36I ACCTGC 2 cut(s) 462, 953
Acc65I GGTACC 1 cut(s) 671
AccB1I GGYRCC 1 cut(s) 671
AccB7I CCANNNNNTGG 1 cut(s) 1152
AccI GTMKAC 1 cut(s) 1035
AciI CCGC 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 2 cut(s) 65, 653
AcuI CTGAAG 2 cut(s) 23, 842
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 4 cut(s) 82, 507, 673, 1091
AfiI CCNNNNNNNGG 4 cut(s) 493, 526, 527, 1152
AflIII ACRYGT 1 cut(s) 867
AjnI CCWGG 3 cut(s) 458, 486, 520
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 4 cut(s) 92, 205, 832, 958
AluI AGCT 4 cut(s) 92, 205, 832, 958
Alw21I GWGCWC 2 cut(s) 748, 1016
Alw26I GTCTC 4 cut(s) 80, 933, 1000, 1027
Alw44I GTGCAC 2 cut(s) 744, 1012
AoxI GGCC 6 cut(s) 24, 42, 397, 495, 795, 801
ApaLI GTGCAC 2 cut(s) 744, 1012
ApeKI GCWGC 4 cut(s) 752, 755, 788, 929
ApoI RAATTY 2 cut(s) 65, 653
ArsI GACNNNNNNTTYG 4 cut(s) 142, 174, 638, 670
Asp718I GGTACC 1 cut(s) 671
AspLEI GCGC 2 cut(s) 473, 947
AspS9I GGNCC 4 cut(s) 495, 640, 802, 880
AsuHPI GGTGA 3 cut(s) 542, 713, 934
AvaII GGWCC 2 cut(s) 640, 880
AxyI CCTNAGG 1 cut(s) 737
BaeGI GKGCMC 3 cut(s) 748, 858, 1016
BalI TGGCCA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 990
BbsI GAAGAC 2 cut(s) 119, 911
Bbv12I GWGCWC 2 cut(s) 748, 1016
BbvI GCAGC 4 cut(s) 739, 742, 800, 916
BccI CCATC 3 cut(s) 40, 305, 404
BceAI ACGGC 1 cut(s) 782
BciT130I CCWGG 3 cut(s) 460, 488, 522
BciVI GTATCC 2 cut(s) 170, 977
BcoDI GTCTC 4 cut(s) 80, 933, 1000, 1027
BfaI CTAG 3 cut(s) 435, 449, 806
BfuAI ACCTGC 2 cut(s) 462, 953
BfuI GTATCC 2 cut(s) 170, 977
BisI GCNGC 5 cut(s) 439, 753, 756, 789, 930
BlsI GCNGC 5 cut(s) 440, 754, 757, 790, 931
Bme1390I CCNGG 3 cut(s) 460, 488, 522
Bme18I GGWCC 2 cut(s) 640, 880
BmgT120I GGNCC 4 cut(s) 495, 640, 802, 880
BmiI GGNNCC 2 cut(s) 496, 673
BmrFI CCNGG 3 cut(s) 460, 488, 522
BmsI GCATC 4 cut(s) 335, 358, 669, 709
BpiI GAAGAC 2 cut(s) 119, 911
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 271, 323
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 355, 458, 520, 798
Bsc4I CCNNNNNNNGG 4 cut(s) 493, 526, 527, 1152
Bse1I ACTGG 3 cut(s) 313, 703, 1157
Bse21I CCTNAGG 1 cut(s) 737
Bse3DI GCAATG 4 cut(s) 291, 604, 840, 1080
BseBI CCWGG 3 cut(s) 460, 488, 522
BseDI CCNNGG 4 cut(s) 355, 458, 520, 798
BseGI GGATG 2 cut(s) 326, 534
BseLI CCNNNNNNNGG 4 cut(s) 493, 526, 527, 1152
BseMI GCAATG 4 cut(s) 291, 604, 840, 1080
BseMII CTCAG 4 cut(s) 84, 132, 147, 1011
BseNI ACTGG 3 cut(s) 313, 703, 1157
BseRI GAGGAG 3 cut(s) 326, 1015, 1030
BseSI GKGCMC 3 cut(s) 748, 858, 1016
BseXI GCAGC 4 cut(s) 739, 742, 800, 916
BsgI GTGCAG 1 cut(s) 807
BshFI GGCC 6 cut(s) 26, 44, 399, 497, 797, 803
BshNI GGYRCC 1 cut(s) 671
BsiHKAI GWGCWC 2 cut(s) 748, 1016
BslI CCNNNNNNNGG 4 cut(s) 493, 526, 527, 1152
BsmAI GTCTC 4 cut(s) 80, 933, 1000, 1027
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 6 cut(s) 26, 44, 399, 497, 797, 803
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 4 cut(s) 748, 858, 990, 1016
BspACI CCGC 1 cut(s) 439
BspANI GGCC 6 cut(s) 26, 44, 399, 497, 797, 803
BspCNI CTCAG 4 cut(s) 83, 131, 146, 1010
BspLI GGNNCC 2 cut(s) 496, 673
BspMI ACCTGC 2 cut(s) 462, 953
BspT107I GGYRCC 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 4 cut(s) 291, 604, 840, 1080
BsrI ACTGG 3 cut(s) 313, 703, 1157
BssECI CCNNGG 4 cut(s) 355, 458, 520, 798
BssNI GRCGYC 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 460, 488, 522
Bst4CI ACNGT 2 cut(s) 731, 1033
Bst6I CTCTTC 2 cut(s) 42, 912
BstACI GRCGYC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 752
BstC8I GCNNGC 9 cut(s) 94, 260, 324, 475, 479, 724, 744, 830, 960
BstDEI CTNAG 6 cut(s) 70, 118, 133, 737, 900, 997
BstDSI CCRYGG 1 cut(s) 798
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 2 cut(s) 326, 534
BstHHI GCGC 2 cut(s) 473, 947
BstMAI GTCTC 4 cut(s) 80, 933, 1000, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 752, 794
BstNI CCWGG 3 cut(s) 460, 488, 522
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 3 cut(s) 458, 486, 520
BstSLI GKGCMC 3 cut(s) 748, 858, 1016
BstV1I GCAGC 4 cut(s) 739, 742, 800, 916
BstV2I GAAGAC 2 cut(s) 119, 911
BstXI CCANNNNNNTGG 2 cut(s) 547, 656
Bsu36I CCTNAGG 1 cut(s) 737
BsuI GTATCC 2 cut(s) 170, 977
BsuRI GGCC 6 cut(s) 26, 44, 399, 497, 797, 803
BtgI CCRYGG 1 cut(s) 798
BtgZI GCGATG 1 cut(s) 1077
BtsCI GGATG 2 cut(s) 326, 534
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 306, 513, 696
BveI ACCTGC 2 cut(s) 462, 953
Cac8I GCNNGC 9 cut(s) 94, 260, 324, 475, 479, 724, 744, 830, 960
CfoI GCGC 2 cut(s) 473, 947
Cfr13I GGNCC 4 cut(s) 495, 640, 802, 880
CseI GACGC 3 cut(s) 276, 304, 575
Csp6I GTAC 4 cut(s) 81, 506, 672, 1090
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 3 cut(s) 263, 676, 1069
CviQI GTAC 4 cut(s) 81, 506, 672, 1090
DdeI CTNAG 6 cut(s) 70, 118, 133, 737, 900, 997
DrdI GACNNNNNNGTC 1 cut(s) 887
DseDI GACNNNNNNGTC 1 cut(s) 887
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 42, 912
EarI CTCTTC 2 cut(s) 42, 912
Eco24I GRGCYC 1 cut(s) 990
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 640, 880
Eco57I CTGAAG 2 cut(s) 23, 842
Eco81I CCTNAGG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 640
EcoO65I GGTNACC 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 3 cut(s) 458, 486, 520
EcoT38I GRGCYC 1 cut(s) 990
FaeI CATG 3 cut(s) 266, 679, 1072
FaiI YATR 6 cut(s) 14, 264, 345, 546, 677, 1070
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FatI CATG 3 cut(s) 262, 675, 1068
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 5 cut(s) 439, 753, 756, 789, 930
FokI GGATG 2 cut(s) 313, 521
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 5 cut(s) 439, 753, 756, 789, 930
FspBI CTAG 3 cut(s) 435, 449, 806
GlaI GCGC 2 cut(s) 472, 946
GluI GCNGC 5 cut(s) 439, 753, 756, 789, 930
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 6 cut(s) 26, 44, 399, 497, 797, 803
HgaI GACGC 3 cut(s) 276, 304, 575
HhaI GCGC 2 cut(s) 473, 947
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 3 cut(s) 266, 679, 1072
Hin6I GCGC 2 cut(s) 471, 945
HinP1I GCGC 2 cut(s) 471, 945
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HinfI GANTC 4 cut(s) 275, 347, 555, 1037
HphI GGTGA 3 cut(s) 542, 713, 934
Hpy166II GTNNAC 5 cut(s) 746, 880, 925, 1014, 1036
Hpy188I TCNGA 5 cut(s) 107, 121, 554, 822, 938
Hpy188III TCNNGA 3 cut(s) 148, 250, 284
Hpy8I GTNNAC 5 cut(s) 746, 880, 925, 1014, 1036
HpyAV CCTTC 8 cut(s) 107, 154, 234, 457, 496, 640, 817, 946
HpyCH4III ACNGT 2 cut(s) 731, 1033
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 6 cut(s) 609, 746, 788, 914, 962, 1014
HpyF10VI GCNNNNNNNGC 2 cut(s) 752, 794
HpyF3I CTNAG 6 cut(s) 70, 118, 133, 737, 900, 997
HpySE526I ACGT 1 cut(s) 867
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 3 cut(s) 266, 679, 1072
HspAI GCGC 2 cut(s) 471, 945
KpnI GGTACC 1 cut(s) 675
LmnI GCTCC 1 cut(s) 955
Lsp1109I GCAGC 4 cut(s) 739, 742, 800, 916
LweI GCATC 4 cut(s) 335, 358, 669, 709
MaeI CTAG 3 cut(s) 435, 449, 806
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 7 cut(s) 190, 530, 701, 731, 895, 980, 1106
MboII GAAGA 6 cut(s) 29, 124, 243, 803, 916, 929
MhlI GDGCHC 4 cut(s) 748, 858, 990, 1016
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 3 cut(s) 65, 234, 653
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 4 cut(s) 269, 341, 564, 1031
MmeI TCCRAC 1 cut(s) 532
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 460, 488, 522
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 3 cut(s) 460, 488, 522
MwoI GCNNNNNNNGC 2 cut(s) 752, 794
NlaIII CATG 3 cut(s) 266, 679, 1072
NlaIV GGNNCC 2 cut(s) 496, 673
NmuCI GTSAC 5 cut(s) 530, 701, 731, 895, 980
OliI CACNNNNGTG 1 cut(s) 545
PctI GAATGC 1 cut(s) 688
PflFI GACNNNGTC 2 cut(s) 1070, 1139
PflMI CCANNNNNTGG 1 cut(s) 1152
PkrI GCNGC 5 cut(s) 440, 754, 757, 790, 931
PleI GAGTC 4 cut(s) 269, 341, 563, 1031
PpsI GAGTC 4 cut(s) 269, 341, 563, 1031
PpuMI RGGWCCY 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 458, 486, 520
PspEI GGTNACC 1 cut(s) 701
PspGI CCWGG 3 cut(s) 458, 486, 520
PspN4I GGNNCC 2 cut(s) 496, 673
PspPI GGNCC 4 cut(s) 495, 640, 802, 880
PspPPI RGGWCCY 1 cut(s) 640
PsyI GACNNNGTC 2 cut(s) 1070, 1139
RsaI GTAC 4 cut(s) 82, 507, 673, 1091
RsaNI GTAC 4 cut(s) 81, 506, 672, 1090
RseI CAYNNNNRTG 1 cut(s) 545
SalI GTCGAC 1 cut(s) 1034
SatI GCNGC 5 cut(s) 439, 753, 756, 789, 930
Sau96I GGNCC 4 cut(s) 495, 640, 802, 880
SchI GAGTC 4 cut(s) 269, 341, 564, 1031
ScrFI CCNGG 3 cut(s) 460, 488, 522
SduI GDGCHC 4 cut(s) 748, 858, 990, 1016
SfaNI GCATC 4 cut(s) 335, 358, 669, 709
SinI GGWCC 2 cut(s) 640, 880
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 250, 338
SmoI CTYRAG 2 cut(s) 250, 338
Sse9I AATT 3 cut(s) 65, 234, 653
SsiI CCGC 1 cut(s) 439
SspMI CTAG 3 cut(s) 435, 449, 806
StyD4I CCNGG 3 cut(s) 458, 486, 520
TaaI ACNGT 2 cut(s) 731, 1033
TaiI ACGT 1 cut(s) 870
TaqI TCGA 2 cut(s) 1002, 1035
TasI AATT 3 cut(s) 65, 234, 653
TauI GCSGC 1 cut(s) 441
TscAI CASTG 3 cut(s) 313, 520, 703
TseFI GTSAC 5 cut(s) 530, 701, 731, 895, 980
TseI GCWGC 4 cut(s) 752, 755, 788, 929
Tsp45I GTSAC 5 cut(s) 530, 701, 731, 895, 980
TspDTI ATGAA 1 cut(s) 597
TspGWI ACGGA 4 cut(s) 68, 186, 209, 394
TspRI CASTG 3 cut(s) 313, 520, 703
Tth111I GACNNNGTC 2 cut(s) 1070, 1139
Van91I CCANNNNNTGG 1 cut(s) 1152
VneI GTGCAC 2 cut(s) 744, 1012
VpaK11BI GGWCC 2 cut(s) 640, 880
XapI RAATTY 2 cut(s) 65, 653
XmiI GTMKAC 1 cut(s) 1035
XspI CTAG 3 cut(s) 435, 449, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.