Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005983

Physical Location & Seq

Genomic Coordinates Forward (+)

71901284 .. 71904913

Gene Structure 3630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0598200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAGCTATTCAAACCTCCGGGATATATGTAGTGATGATGAAACTGGTGAGCCAAACTCAGTGTCCCCAGCGCTAACTTCTCCCAGAAATTTCGAAAAGCTATCTGGAAACTACAAATGGCACAGGAAGAGGGGTCCAGAAATGAGGCGTGTGAAATGGGGGCCAAGAGGATGGTGGGATTGTTTGGGGGATTTATGTCAGGGACAGTGCTGTTGGGGAGAAGCTGAGCAAGAGGCCTCGAGTTATGATCAATTGACAGAAGCCTTTGCGGAGATGAGCGACTACTCAAGTGCTCCTAGCGCACCTCAGAGGCTCAGATACCAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

109

Amino Acids

12.5

Weight (kDa)

5.13

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02070 AT3G02070
fragaria_vesca	FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451
malus_domestica	MD09G1000900.v1.1 MD17G1003600.v1.1
prunus_persica	Prupe.3G315400_v2.0.a1 Prupe.3G315400_v2.0.a1
pyrus_communis	pycom111g00060 pycom17g00040
rosa_chinensis	RchiOBHm_Chr2g0176721
rosa_laevigata	RLG00000022440
rosa_multiflora	Rmu_ssc0000468.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076220
rosa_rugosa	Rorug02G0598100 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200
rosa_samantha	Rh2AG675400 Rh2BG686700 Rh2CG650000 Rh2DG700900
rosa_wichuraiana	Rw2G055430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	88
AfeI	AGCGCT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	3 cut(s)	6, 100, 224
AluI	AGCT	3 cut(s)	6, 100, 224
Alw21I	GWGCWC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	2 cut(s)	161, 234
ApoI	RAATTY	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	2 cut(s)	73, 302
AspS9I	GGNCC	2 cut(s)	134, 161
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	295
BccI	CCATC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	134, 161
BmiI	GGNNCC	2 cut(s)	135, 162
BmrFI	CCNGG	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	176
BseMII	CTCAG	4 cut(s)	72, 216, 320, 328
BseNI	ACTGG	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	163, 236
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	49, 216
BsmFI	GGGAC	2 cut(s)	49, 216
BsnI	GGCC	2 cut(s)	163, 236
BsoBI	CYCGRG	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	247
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	2 cut(s)	163, 236
BspCNI	CTCAG	4 cut(s)	71, 217, 319, 327
BspLI	GGNNCC	2 cut(s)	135, 162
BspT104I	TTCGAA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	58, 225, 306, 314
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 302
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	163, 236
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	66, 212
CfoI	GCGC	2 cut(s)	73, 302
Cfr13I	GGNCC	2 cut(s)	134, 161
CviJI	RGCY	8 cut(s)	6, 52, 100, 163, 224, 236, 263, 313
CviKI_1	RGCY	8 cut(s)	6, 52, 100, 163, 224, 236, 263, 313
DdeI	CTNAG	4 cut(s)	58, 225, 306, 314
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	134
Eco47III	AGCGCT	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	238
FaiI	YATR	4 cut(s)	26, 28, 196, 246
FaqI	GGGAC	2 cut(s)	49, 216
FbaI	TGATCA	1 cut(s)	247
FokI	GGATG	1 cut(s)	183
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	72, 301
GsaI	CCCAGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	163, 236
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	2 cut(s)	73, 302
Hin6I	GCGC	2 cut(s)	71, 300
HinP1I	GCGC	2 cut(s)	71, 300
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	309, 317
Hpy188III	TCNNGA	2 cut(s)	105, 137
HpyCH4III	ACNGT	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	4 cut(s)	58, 225, 306, 314
HspAI	GCGC	2 cut(s)	71, 300
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	8 cut(s)	30, 32, 81, 90, 97, 109, 150, 185
MaeI	CTAG	1 cut(s)	297
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	139
MfeI	CAATTG	2 cut(s)	251, 323
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	3 cut(s)	88, 251, 323
MnlI	CCTC	8 cut(s)	26, 123, 138, 161, 226, 247, 303, 315
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	20
MunI	CAATTG	2 cut(s)	251, 323
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	247
NlaIV	GGNNCC	2 cut(s)	135, 162
NspV	TTCGAA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	135, 162
PspPI	GGNCC	2 cut(s)	134, 161
PspXI	VCTCGAGB	1 cut(s)	238
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	134, 161
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	5 cut(s)	8, 18, 102, 226, 307
Sfr274I	CTCGAG	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	93
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	238, 286
SmoI	CTYRAG	2 cut(s)	238, 286
Sse9I	AATT	3 cut(s)	88, 251, 323
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	93, 239
TasI	AATT	3 cut(s)	88, 251, 323
TscAI	CASTG	2 cut(s)	66, 212
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	66, 212
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	238
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.