Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005983

Physical Location & Seq

Genomic Coordinates Reverse (-)

67715 .. 70471

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00060.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATGAACGGGACTCACAGTGTGGGCGAATGTTCTAGCTCAACTTCCTTGAGCAGCCAACAGGATGTTGAGGATGACCGTATGATTGCTGTTGTACTATCAGAAGAGTATGCTAAGTTAGATGGTGCAGTTGCTAGACGCCTTTCCAACCTGGCACCTGTTCCTCATGTTCCACGGATAAATTCCTACATCCCCAACATAAGTGATGCTGGTTTGGATCACCAACGCCTTCTCCAGAGGTTACATGTCTATGGTTTATACGAAGTAAAGGTTTCTGGTGATGGGAATTGTCAGTTTCGTGCACTTTCAGAACAGATGTACAAGTCTCCAGAGTATCACAAACATGTTCGGAAAGAGATTGTGAAGCAGCTCAAAGACTATCATTCATTGTATGAAGGCTATGTCCCTATGAAGTACAAGCGCTATCACAAGAAAATGGCAAAATCCGGTGAATGGGGAGATCATGTTACTTTACAAGCAGCAGCTGACAAGTTTGAAGCAAAGATTTGCCTTTTGACATCATTCAGAGATACTTGCTTTATTGAAATTATGCCCCAGTACCAGCCACCAAAACGTGAGTTGTGGCTGAGTTTTTGGTCGGAGGTTCATTACAATTCATTATATGAAGTCCGAGACATGCCAATTCAACAGAAGCCAAGGAGGAAACACTGGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

227

Amino Acids

26.41

Weight (kDa)

8.74

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02070 AT3G02070
fragaria_vesca	FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451
malus_domestica	MD09G1000900.v1.1 MD17G1003600.v1.1
prunus_persica	Prupe.3G315400_v2.0.a1 Prupe.3G315400_v2.0.a1
pyrus_communis	pycom111g00060 pycom17g00040
rosa_chinensis	RchiOBHm_Chr2g0176721
rosa_laevigata	RLG00000022440
rosa_multiflora	Rmu_ssc0000468.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076220
rosa_rugosa	Rorug02G0598100 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200
rosa_samantha	Rh2AG675400 Rh2BG686700 Rh2CG650000 Rh2DG700900
rosa_wichuraiana	Rw2G055430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	4 cut(s)	96, 320, 416, 560
AfeI	AGCGCT	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflIII	ACRYGT	2 cut(s)	244, 343
AgsI	TTSAA	3 cut(s)	497, 545, 647
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	39, 370, 485
AluI	AGCT	3 cut(s)	39, 370, 485
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	330, 627
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	422
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	54, 367, 479, 482
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	423
AsuHPI	GGTGA	3 cut(s)	212, 290, 461
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	66, 379, 491, 494
BccI	CCATC	2 cut(s)	116, 275
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	330, 627
BfaI	CTAG	3 cut(s)	36, 135, 679
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	4 cut(s)	55, 368, 480, 483
BlsI	GCNGC	4 cut(s)	56, 369, 481, 484
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	550
BpmI	CTGGAG	2 cut(s)	218, 312
BpuEI	CTTGAG	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	173, 656
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	556, 674
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	173, 656
BseGI	GGATG	3 cut(s)	70, 79, 189
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	2 cut(s)	556, 674
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	66, 379, 491, 494
BsgI	GTGCAG	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	2 cut(s)	25, 389
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	330, 627
BsmFI	GGGAC	2 cut(s)	25, 389
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	217, 460
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	556, 674
BssECI	CCNNGG	2 cut(s)	173, 656
BssMI	GATC	2 cut(s)	217, 460
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	20, 80
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	114, 587
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	70, 79, 189
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	2 cut(s)	220, 463
BstMAI	GTCTC	2 cut(s)	330, 627
BstMBI	GATC	2 cut(s)	217, 460
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	3 cut(s)	248, 347, 640
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	4 cut(s)	66, 379, 491, 494
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	70, 79, 189
BtsIMutI	CAGTG	2 cut(s)	25, 667
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	423
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	4 cut(s)	95, 319, 415, 559
CviAII	CATG	5 cut(s)	167, 245, 344, 464, 637
CviJI	RGCY	8 cut(s)	39, 57, 370, 399, 485, 565, 586, 655
CviKI_1	RGCY	8 cut(s)	39, 57, 370, 399, 485, 565, 586, 655
CviQI	GTAC	4 cut(s)	95, 319, 415, 559
DdeI	CTNAG	2 cut(s)	114, 587
DpnI	GATC	2 cut(s)	219, 462
DpnII	GATC	2 cut(s)	217, 460
DraIII	CACNNNGTG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	656
Eco47III	AGCGCT	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	5 cut(s)	170, 248, 347, 467, 640
FaqI	GGGAC	2 cut(s)	25, 389
FatI	CATG	5 cut(s)	166, 244, 343, 463, 636
Fnu4HI	GCNGC	4 cut(s)	55, 368, 480, 483
FokI	GGATG	3 cut(s)	77, 86, 176
Fsp4HI	GCNGC	4 cut(s)	55, 368, 480, 483
FspBI	CTAG	3 cut(s)	36, 135, 679
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	4 cut(s)	55, 368, 480, 483
GsuI	CTGGAG	2 cut(s)	218, 312
HaeII	RGCGCY	1 cut(s)	424
HapII	CCGG	1 cut(s)	447
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	170, 248, 347, 467, 640
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	3 cut(s)	212, 290, 461
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	6 cut(s)	103, 310, 351, 527, 601, 632
Hpy188III	TCNNGA	2 cut(s)	235, 329
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	239, 389
HpyCH4III	ACNGT	2 cut(s)	20, 80
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	2 cut(s)	128, 302
HpyF3I	CTNAG	2 cut(s)	114, 587
HpySE526I	ACGT	1 cut(s)	574
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	5 cut(s)	170, 248, 347, 467, 640
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	217, 460
Lsp1109I	GCAGC	4 cut(s)	66, 379, 491, 494
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	36, 135, 679
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	2 cut(s)	240, 466
MalI	GATC	2 cut(s)	219, 462
MboI	GATC	2 cut(s)	217, 460
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	5 cut(s)	181, 286, 546, 613, 642
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	171, 579
MnlI	CCTC	5 cut(s)	64, 174, 231, 595, 654
MslI	CAYNNNNRTG	2 cut(s)	249, 342
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	217, 460
NlaIII	CATG	5 cut(s)	170, 248, 347, 467, 640
NlaIV	GGNNCC	1 cut(s)	156
NspI	RCATGY	3 cut(s)	248, 347, 640
PciI	ACATGT	2 cut(s)	244, 343
PkrI	GCNGC	4 cut(s)	56, 369, 481, 484
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PscI	ACATGT	2 cut(s)	244, 343
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	156
PstNI	CAGNNNCTG	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	4 cut(s)	96, 320, 416, 560
RsaNI	GTAC	4 cut(s)	95, 319, 415, 559
RseI	CAYNNNNRTG	2 cut(s)	249, 342
SatI	GCNGC	4 cut(s)	55, 368, 480, 483
Sau3AI	GATC	2 cut(s)	217, 460
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	9 cut(s)	41, 153, 160, 242, 273, 372, 487, 577, 606
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	249, 342
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	181, 286, 546, 613, 642
SspMI	CTAG	3 cut(s)	36, 135, 679
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	2 cut(s)	20, 80
TaiI	ACGT	1 cut(s)	577
TasI	AATT	5 cut(s)	181, 286, 546, 613, 642
TatI	WGTACW	3 cut(s)	94, 318, 414
TscAI	CASTG	2 cut(s)	25, 674
TseI	GCWGC	4 cut(s)	54, 367, 479, 482
TspDTI	ATGAA	7 cut(s)	20, 375, 408, 425, 596, 606, 639
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	25, 674
VneI	GTGCAC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	3 cut(s)	248, 347, 640
XspI	CTAG	3 cut(s)	36, 135, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.