Rw2G055430

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005983
Physical Location & Seq
Forward (+)
82810929 .. 82814258
3330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G055430.1

Sequence Viewer

Length: 561 bp
ATGATGAACGGGACTCATAGTACGGGTGACTGTTCTAGCTCTACTTCCCTGAGCAGCCAGCAGGATGTTGATGATGACTGCATGATTGCCGTTGTACTATCAGAAGAGTATGCTAAGTTGGATGGTGCAGTTGCTAGACGCCTTTCCAACCTGGCACCTATTCCGCATATCCCACGGATAAATTCCTACATCCCCAACATAAGTGATGCAAGTTTGGATCATCAACGGCTTCTCCAGAGGTTGCATGTCTATCGTTTATATGAAGTAAAGGTTTCTGGTGATGGCAATTGTCAGTTTCGCGCACTTTCAGACCAGATTTACAAGTCTCCAGATTATCACAAGCATGTGCGGAAAGAGATTGTTAAACAGATCAAAGACTATCGTTCTCAATATGAAGGCTATGTCCCTATGAAGTACAAACACTATTACAAGAAAATGGCAAAATCCGGTGAATGGGGTGATCATGTTACCTTACAAGCAGCAGCTGATAAGGTCTGGTATATACATATTTGTCCTAATTATATGCATCACATAGATTATTATTTGCTATTATGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

186

Amino Acids

21.51

Weight (kDa)

7.7

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 93 - 163 2.3e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 164, 349
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 3 cut(s) 22, 96, 416
AfiI CCNNNNNNNGG 1 cut(s) 453
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 39, 485
AluI AGCT 2 cut(s) 39, 485
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 485
ApeKI GCWGC 3 cut(s) 54, 479, 482
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 302
AsuHPI GGTGA 4 cut(s) 38, 290, 461, 470
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 66, 491, 494
BccI CCATC 2 cut(s) 116, 275
BceAI ACGGC 2 cut(s) 74, 242
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 36, 135
BisI GCNGC 3 cut(s) 55, 480, 483
BlsI GCNGC 3 cut(s) 56, 481, 484
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 196, 535
BpmI CTGGAG 2 cut(s) 218, 312
Bpu10I CCTNAGC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 70, 127, 189
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 66, 491, 494
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 2 cut(s) 25, 389
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 2 cut(s) 25, 389
Bsp143I GATC 3 cut(s) 217, 369, 460
BspACI CCGC 2 cut(s) 164, 349
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 3 cut(s) 217, 369, 460
BssNI GRCGYC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 50, 114
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 3 cut(s) 70, 127, 189
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 3 cut(s) 220, 372, 463
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 3 cut(s) 217, 369, 460
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 248, 347
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 66, 491, 494
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 3 cut(s) 70, 127, 189
Cac8I GCNNGC 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 1 cut(s) 302
CseI GACGC 1 cut(s) 147
Csp6I GTAC 3 cut(s) 21, 95, 415
CviAII CATG 4 cut(s) 82, 245, 344, 464
CviJI RGCY 5 cut(s) 39, 57, 229, 399, 485
CviKI_1 RGCY 5 cut(s) 39, 57, 229, 399, 485
CviQI GTAC 3 cut(s) 21, 95, 415
DdeI CTNAG 2 cut(s) 50, 114
DpnI GATC 3 cut(s) 219, 371, 462
DpnII GATC 3 cut(s) 217, 369, 460
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 528
FaeI CATG 4 cut(s) 85, 248, 347, 467
FaqI GGGAC 2 cut(s) 25, 389
FatI CATG 4 cut(s) 81, 244, 343, 463
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 55, 480, 483
FokI GGATG 3 cut(s) 77, 134, 176
Fsp4HI GCNGC 3 cut(s) 55, 480, 483
FspBI CTAG 2 cut(s) 36, 135
GlaI GCGC 1 cut(s) 301
GluI GCNGC 3 cut(s) 55, 480, 483
GsuI CTGGAG 2 cut(s) 218, 312
HapII CCGG 1 cut(s) 447
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 4 cut(s) 85, 248, 347, 467
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 447
HphI GGTGA 4 cut(s) 38, 290, 461, 470
Hpy188I TCNGA 2 cut(s) 103, 310
Hpy188III TCNNGA 2 cut(s) 235, 329
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 5 cut(s) 81, 128, 209, 244, 526
HpyF3I CTNAG 2 cut(s) 50, 114
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 4 cut(s) 85, 248, 347, 467
HspAI GCGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 3 cut(s) 217, 369, 460
Lsp1109I GCAGC 3 cut(s) 66, 491, 494
LweI GCATC 2 cut(s) 196, 535
MaeI CTAG 2 cut(s) 36, 135
MaeIII GTNAC 2 cut(s) 26, 466
MalI GATC 3 cut(s) 219, 371, 462
MboI GATC 3 cut(s) 217, 369, 460
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 286
MluCI AATT 3 cut(s) 181, 286, 517
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 99, 171
MnlI CCTC 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 528
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 300
NdeII GATC 3 cut(s) 217, 369, 460
NlaIII CATG 4 cut(s) 85, 248, 347, 467
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 528
NspI RCATGY 2 cut(s) 248, 347
PkrI GCNGC 3 cut(s) 56, 481, 484
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 3 cut(s) 22, 96, 416
RsaNI GTAC 3 cut(s) 21, 95, 415
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 55, 480, 483
Sau3AI GATC 3 cut(s) 217, 369, 460
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 152
SetI ASST 8 cut(s) 41, 153, 160, 242, 273, 473, 487, 495
SfaNI GCATC 2 cut(s) 196, 535
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 3 cut(s) 181, 286, 517
SsiI CCGC 2 cut(s) 164, 349
SspMI CTAG 2 cut(s) 36, 135
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 32
TasI AATT 3 cut(s) 181, 286, 517
TatI WGTACW 2 cut(s) 94, 414
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 54, 479, 482
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 20, 276, 408, 425
TspGWI ACGGA 1 cut(s) 190
XapI RAATTY 1 cut(s) 181
XceI RCATGY 2 cut(s) 248, 347
XspI CTAG 2 cut(s) 36, 135
Zsp2I ATGCAT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.