FvH4_6g54451

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005983
Physical Location & Seq
Forward (+)
39750485 .. 39755598
5114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54451.t2

Sequence Viewer

Length: 651 bp
ATGATGAACGGGAATCATAGTGTGGGTGAGTGTTCTAGCTCAACTTCCCTGAGCAGCCAGCAGGATGTTGAGGATGACTGCATGATCGCCTTTGTACTATCAGAAGAGTATGCTCAGTTGGATGGTGCTGTTGCTAGACGCCTTTCCAACCTGGCACCTATTCCGCATATCCCACGCATAAATTCCTACATCCCCAACATAAGTGATGCTAGCTTGGATCATCAACGGCTTCTCCAGAGGTTGTATGTCTATCGTTTATGTGAAGTAAAGGTTTCTGGTGATGGCAATTGTCAGTTTCGCGCACTTTCAGACCAGATGTACAAGTCTCCAGATTATCACAAGCATGTCCGGAAAGAGATTGTTAAACAGCTCAAAGATTATCGTTCTCAATATGAAGGCTATGTACCTATGAGATCCGGTGAATGGGGTGATCATGTTACCTTACAAGCAGCAGCTGATAAGTTCGAAGCAAAGATTTGTCTTTTGACATCATTCAGAGATACTTGCTTCATTGAAATTAAGCCTCAAATCCAGCCACCAAAACGTGAGTTGTGGTTGAGTTTCTGGTCTGAGGTTCATTACAATTCATTATATGAAATCAAAGATGCTCCAATTCAACAGAAGCCGAGGAAGAAACACTGGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

217

Amino Acids

25.09

Weight (kDa)

7.07

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 93 - 200 1.2e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 1 cut(s) 164
AclWI GGATC 2 cut(s) 225, 408
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 3 cut(s) 96, 320, 405
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 2 cut(s) 515, 617
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 39, 213, 370, 455
AluI AGCT 4 cut(s) 39, 213, 370, 455
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 225, 408
AlwNI CAGNNNCTG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 54, 449, 452
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 302
AsuHPI GGTGA 4 cut(s) 38, 290, 431, 440
AsuII TTCGAA 1 cut(s) 465
AsuNHI GCTAGC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbvI GCAGC 3 cut(s) 66, 461, 464
BccI CCATC 2 cut(s) 116, 275
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 4 cut(s) 36, 135, 210, 649
BisI GCNGC 3 cut(s) 55, 450, 453
BlsI GCNGC 3 cut(s) 56, 451, 454
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 196, 595
BmtI GCTAGC 1 cut(s) 213
BpmI CTGGAG 2 cut(s) 218, 312
Bpu10I CCTNAGC 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 626
BsaWI WCCGGW 2 cut(s) 348, 416
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 644
BseAI TCCGGA 1 cut(s) 348
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 4 cut(s) 70, 79, 127, 189
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 41, 128, 561
BseNI ACTGG 1 cut(s) 644
BseXI GCAGC 3 cut(s) 66, 461, 464
Bsh1236I CGCG 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 349, 417
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 330
Bsp119I TTCGAA 1 cut(s) 465
Bsp13I TCCGGA 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 4 cut(s) 84, 217, 413, 430
BspACI CCGC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 42, 127, 562
BspEI TCCGGA 1 cut(s) 348
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 225, 408
BspT104I TTCGAA 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 644
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 4 cut(s) 84, 217, 413, 430
BssNI GRCGYC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 59, 211
BstDEI CTNAG 3 cut(s) 50, 114, 570
BstF5I GGATG 4 cut(s) 70, 79, 127, 189
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 4 cut(s) 87, 220, 416, 433
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 4 cut(s) 84, 217, 413, 430
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 66, 461, 464
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BtsCI GGATG 4 cut(s) 70, 79, 127, 189
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 2 cut(s) 59, 211
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 302
CseI GACGC 1 cut(s) 147
Csp6I GTAC 3 cut(s) 95, 319, 404
CviAII CATG 3 cut(s) 82, 344, 434
CviQI GTAC 3 cut(s) 95, 319, 404
DdeI CTNAG 3 cut(s) 50, 114, 570
DpnI GATC 4 cut(s) 86, 219, 415, 432
DpnII GATC 4 cut(s) 84, 217, 413, 430
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 85, 347, 437
FatI CATG 3 cut(s) 81, 343, 433
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 3 cut(s) 55, 450, 453
FokI GGATG 4 cut(s) 77, 86, 134, 176
Fsp4HI GCNGC 3 cut(s) 55, 450, 453
FspBI CTAG 4 cut(s) 36, 135, 210, 649
GlaI GCGC 1 cut(s) 301
GluI GCNGC 3 cut(s) 55, 450, 453
GsuI CTGGAG 2 cut(s) 218, 312
HapII CCGG 2 cut(s) 349, 417
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 3 cut(s) 85, 347, 437
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 1 cut(s) 13
HpaII CCGG 2 cut(s) 349, 417
HphI GGTGA 4 cut(s) 38, 290, 431, 440
Hpy188I TCNGA 4 cut(s) 103, 310, 497, 571
Hpy188III TCNNGA 3 cut(s) 235, 329, 349
HpyAV CCTTC 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 1 cut(s) 81
HpyF3I CTNAG 3 cut(s) 50, 114, 570
HpySE526I ACGT 1 cut(s) 544
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 3 cut(s) 85, 347, 437
HspAI GCGC 1 cut(s) 300
Kpn2I TCCGGA 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 84, 217, 413, 430
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 3 cut(s) 66, 461, 464
LweI GCATC 2 cut(s) 196, 595
MaeI CTAG 4 cut(s) 36, 135, 210, 649
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 436
MalI GATC 4 cut(s) 86, 219, 415, 432
MboI GATC 4 cut(s) 84, 217, 413, 430
MboII GAAGA 2 cut(s) 116, 643
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 1 cut(s) 413
MluCI AATT 5 cut(s) 181, 286, 516, 583, 612
MmeI TCCRAC 2 cut(s) 99, 171
MnlI CCTC 5 cut(s) 64, 231, 534, 565, 621
MroI TCCGGA 1 cut(s) 348
MseI TTAA 2 cut(s) 363, 519
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 2 cut(s) 349, 417
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 300
NdeII GATC 4 cut(s) 84, 217, 413, 430
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 85, 347, 437
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 651
NspI RCATGY 1 cut(s) 347
NspV TTCGAA 1 cut(s) 465
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 3 cut(s) 56, 451, 454
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 3 cut(s) 96, 320, 405
RsaNI GTAC 3 cut(s) 95, 319, 404
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 363, 519
SatI GCNGC 3 cut(s) 55, 450, 453
Sau3AI GATC 4 cut(s) 84, 217, 413, 430
ScrFI CCNGG 1 cut(s) 152
SfaNI GCATC 2 cut(s) 196, 595
SfuI TTCGAA 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 5 cut(s) 181, 286, 516, 583, 612
SsiI CCGC 1 cut(s) 164
SspMI CTAG 4 cut(s) 36, 135, 210, 649
StyD4I CCNGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 547
TaqI TCGA 1 cut(s) 465
TasI AATT 5 cut(s) 181, 286, 516, 583, 612
TatI WGTACW 2 cut(s) 94, 318
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 2 cut(s) 363, 519
Tru9I TTAA 2 cut(s) 363, 519
TscAI CASTG 1 cut(s) 644
TseI GCWGC 3 cut(s) 54, 449, 452
TspDTI ATGAA 6 cut(s) 20, 408, 499, 566, 576, 609
TspRI CASTG 1 cut(s) 644
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 347
XspI CTAG 4 cut(s) 36, 135, 210, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.