Rroxscaffold_2G00076220

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005983
Physical Location & Seq
Reverse (-)
133212 .. 139169
5958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076220.1

Sequence Viewer

Length: 678 bp
ATGAACGGGACTCATACTACGGGTGACTGTTCTAGCTCTACTTCCCTGAGCAGCCAGCAGGATGTTGATGATGACTGCATGATTGCCGTTGTACTATCGGAAGAGTATGCTAAGTTGGATGGTGCAGTTGCTAGACGCCTTTCCAACCTGGCACCTATTCCGCATATCCCACGGATAAATTCCTACATCCCCAACATAAGTGATGCTAGTTTGGATCATCAGCGGCTTCTCCAGAGGTTGCATGTCTATCGTTTATATGAAGTAAAGGTTTCTGGTGATGGCAATTGTCAGTTTCGCGCACTTTCAGACCAGATTTACAATTCTCCAGATTATCACAAGCATGTGCGGAAAGAGATTGTTAAACAGCTCAAAGACTATCGTTCTCAATACGAAGGCTATGTCCCTATGAAGTACAAACACTATTACAAGAAAATGGCAAAATCCGGTGAATGGGGTGATCATGTTACCTTACAAGCAGCAGCCGATAAGTTTGAAGCGAAGATTTGTCTTTTGACATCATTCAGAGATACTTGCTTTATCGAAATTATGCCTCAATTCCAGCCACCAAAACGTGAGTTGTGGCTGAGTTTCTGGTCTGAGGTTCATTACAATTCATTATATGAAATCCAAGATGCTCCAATTGAACAAAAACCGAGGAGGAAACACTGGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

225

Amino Acids

26.27

Weight (kDa)

7.68

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 92 - 198 2.1e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 1 cut(s) 297
AciI CCGC 3 cut(s) 161, 223, 346
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 2 cut(s) 93, 413
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 2 cut(s) 494, 644
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 36, 367
AluI AGCT 2 cut(s) 36, 367
AlwI GGATC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 51, 476, 479
ApoI RAATTY 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 4 cut(s) 35, 287, 458, 467
BanI GGYRCC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 63, 488, 491
BccI CCATC 2 cut(s) 113, 272
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 457
BfaI CTAG 4 cut(s) 33, 132, 207, 676
BisI GCNGC 4 cut(s) 52, 224, 477, 480
BlsI GCNGC 4 cut(s) 53, 225, 478, 481
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 193, 622
BpmI CTGGAG 2 cut(s) 215, 309
Bpu10I CCTNAGC 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 170, 653
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 671
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 170, 653
BseGI GGATG 3 cut(s) 67, 124, 186
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMII CTCAG 3 cut(s) 38, 575, 588
BseNI ACTGG 1 cut(s) 671
BseRI GAGGAG 1 cut(s) 670
BseXI GCAGC 3 cut(s) 63, 488, 491
BsgI GTGCAG 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 2 cut(s) 22, 386
BslI CCNNNNNNNGG 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 22, 386
Bsp143I GATC 2 cut(s) 214, 457
BspACI CCGC 3 cut(s) 161, 223, 346
BspCNI CTCAG 3 cut(s) 39, 576, 589
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 671
BssECI CCNNGG 2 cut(s) 170, 653
BssMI GATC 2 cut(s) 214, 457
BssNI GRCGYC 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 4 cut(s) 47, 111, 584, 597
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 67, 124, 186
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 217, 460
BstMBI GATC 2 cut(s) 214, 457
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 2 cut(s) 245, 344
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 63, 488, 491
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 67, 124, 186
BtsIMutI CAGTG 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 299
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 92, 412
CviAII CATG 4 cut(s) 79, 242, 341, 461
CviJI RGCY 8 cut(s) 36, 54, 226, 367, 396, 482, 562, 583
CviKI_1 RGCY 8 cut(s) 36, 54, 226, 367, 396, 482, 562, 583
CviQI GTAC 2 cut(s) 92, 412
DdeI CTNAG 4 cut(s) 47, 111, 584, 597
DpnI GATC 2 cut(s) 216, 459
DpnII GATC 2 cut(s) 214, 457
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 4 cut(s) 82, 245, 344, 464
FaqI GGGAC 2 cut(s) 22, 386
FatI CATG 4 cut(s) 78, 241, 340, 460
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 4 cut(s) 52, 224, 477, 480
FokI GGATG 3 cut(s) 74, 131, 173
Fsp4HI GCNGC 4 cut(s) 52, 224, 477, 480
FspBI CTAG 4 cut(s) 33, 132, 207, 676
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 52, 224, 477, 480
GsuI CTGGAG 2 cut(s) 215, 309
HapII CCGG 1 cut(s) 444
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 4 cut(s) 82, 245, 344, 464
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 444
HphI GGTGA 4 cut(s) 35, 287, 458, 467
Hpy188I TCNGA 4 cut(s) 100, 307, 524, 598
Hpy188III TCNNGA 2 cut(s) 232, 326
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 3 cut(s) 78, 125, 241
HpyF3I CTNAG 4 cut(s) 47, 111, 584, 597
HpySE526I ACGT 1 cut(s) 571
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 4 cut(s) 82, 245, 344, 464
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 2 cut(s) 214, 457
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 3 cut(s) 63, 488, 491
LweI GCATC 2 cut(s) 193, 622
MaeI CTAG 4 cut(s) 33, 132, 207, 676
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 2 cut(s) 23, 463
MalI GATC 2 cut(s) 216, 459
MboI GATC 2 cut(s) 214, 457
MboII GAAGA 2 cut(s) 113, 511
MfeI CAATTG 2 cut(s) 283, 639
MluCI AATT 7 cut(s) 178, 283, 319, 543, 554, 610, 639
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 2 cut(s) 96, 168
MnlI CCTC 5 cut(s) 228, 561, 592, 648, 651
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 149
MunI CAATTG 2 cut(s) 283, 639
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 297
NdeII GATC 2 cut(s) 214, 457
NlaIII CATG 4 cut(s) 82, 245, 344, 464
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 2 cut(s) 245, 344
PkrI GCNGC 4 cut(s) 53, 225, 478, 481
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 153
RsaI GTAC 2 cut(s) 93, 413
RsaNI GTAC 2 cut(s) 92, 412
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 4 cut(s) 52, 224, 477, 480
Sau3AI GATC 2 cut(s) 214, 457
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 149
SetI ASST 9 cut(s) 38, 150, 157, 239, 270, 369, 470, 574, 603
SfaNI GCATC 2 cut(s) 193, 622
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 7 cut(s) 178, 283, 319, 543, 554, 610, 639
SsiI CCGC 3 cut(s) 161, 223, 346
SspMI CTAG 4 cut(s) 33, 132, 207, 676
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 540
TasI AATT 7 cut(s) 178, 283, 319, 543, 554, 610, 639
TatI WGTACW 2 cut(s) 91, 411
TauI GCSGC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 671
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 3 cut(s) 51, 476, 479
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 6 cut(s) 17, 273, 422, 593, 603, 636
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 1 cut(s) 671
XapI RAATTY 1 cut(s) 178
XceI RCATGY 2 cut(s) 245, 344
XspI CTAG 4 cut(s) 33, 132, 207, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.