Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005983

Physical Location & Seq

Genomic Coordinates Forward (+)

88711174 .. 88715903

Gene Structure 4730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG675400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATGAACGGGACTCATAGTACGGGTGACTGTTCTAGCTCTACTTCCCTGAGCAGCCAGCAGGATGTTGATGATGACTGCATGATTGCCGTTGTACTATCAGAAGAATATGCTAAGTTGGATGGGGCAGTTGCTAGACGCCTTTCCAACCTGGCACCTATTCCGCATATCCCACGGATAAATTCCTACATCCCCAACATAAGTGATGCAAGTTTGGATCATCAACGGCTTCTCCAGAGGTTGCATGTCTATCGTTTATATGAAGTAAAGGTTTCTGGTGATGGCAATTGTCAGTTTCGCGCACTTTCAGAACAGATTTACAAATCTCCAGATTATCACAAGCATGTGCGGAAAGAGATTGTTAAACAGCTCAAAGACTATCGTTCTCAATATGAAGGCTATGTCCCTATGAAGTACAAACACTATTACAAGAAAATGGCAAAGTATGTTAAGTTGTTTTGGGTCATGAGTTCTGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

160

Amino Acids

18.51

Weight (kDa)

9.02

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02070 AT3G02070
fragaria_vesca	FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451
malus_domestica	MD09G1000900.v1.1 MD17G1003600.v1.1
prunus_persica	Prupe.3G315400_v2.0.a1 Prupe.3G315400_v2.0.a1
pyrus_communis	pycom111g00060 pycom17g00040
rosa_chinensis	RchiOBHm_Chr2g0176721
rosa_laevigata	RLG00000022440
rosa_multiflora	Rmu_ssc0000468.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076220
rosa_rugosa	Rorug02G0598100 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200
rosa_samantha	Rh2AG675400 Rh2BG686700 Rh2CG650000 Rh2DG700900
rosa_wichuraiana	Rw2G055430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	1 cut(s)	300
AciI	CCGC	2 cut(s)	164, 349
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	3 cut(s)	22, 96, 416
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	39, 370
AluI	AGCT	2 cut(s)	39, 370
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	38, 290
BanI	GGYRCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	2 cut(s)	116, 275
BceAI	ACGGC	2 cut(s)	74, 242
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	36, 135
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	218, 312
Bpu10I	CCTNAGC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	70, 127, 189
BseMII	CTCAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	25, 389
BsmFI	GGGAC	2 cut(s)	25, 389
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	2 cut(s)	164, 349
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	50, 114
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	70, 127, 189
BstFNI	CGCG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	2 cut(s)	248, 347
BstSCI	CCNGG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	70, 127, 189
Cac8I	GCNNGC	1 cut(s)	59
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	302
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	21, 95, 415
CviAII	CATG	4 cut(s)	82, 245, 344, 466
CviJI	RGCY	5 cut(s)	39, 57, 229, 370, 399
CviKI_1	RGCY	5 cut(s)	39, 57, 229, 370, 399
CviQI	GTAC	3 cut(s)	21, 95, 415
DdeI	CTNAG	2 cut(s)	50, 114
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	85, 248, 347, 469
FaqI	GGGAC	2 cut(s)	25, 389
FatI	CATG	4 cut(s)	81, 244, 343, 465
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	3 cut(s)	77, 134, 176
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	36, 135
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	218, 312
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	85, 248, 347, 469
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	38, 290
Hpy188I	TCNGA	2 cut(s)	103, 310
Hpy188III	TCNNGA	3 cut(s)	235, 329, 466
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	81, 209, 244
HpyF3I	CTNAG	2 cut(s)	50, 114
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	85, 248, 347, 469
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	47, 62, 71, 137, 164, 248, 261, 342
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	36, 135
MaeIII	GTNAC	2 cut(s)	26, 475
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	116
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	2 cut(s)	181, 286
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	99, 171
MnlI	CCTC	1 cut(s)	231
MseI	TTAA	2 cut(s)	363, 450
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	300
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	85, 248, 347, 469
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	2 cut(s)	248, 347
PagI	TCATGA	1 cut(s)	465
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	156
RsaI	GTAC	3 cut(s)	22, 96, 416
RsaNI	GTAC	3 cut(s)	21, 95, 415
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	363, 450
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	6 cut(s)	41, 153, 160, 242, 273, 372
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	2 cut(s)	181, 286
SsiI	CCGC	2 cut(s)	164, 349
SspMI	CTAG	2 cut(s)	36, 135
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	32
TasI	AATT	2 cut(s)	181, 286
TatI	WGTACW	2 cut(s)	94, 414
Tru1I	TTAA	2 cut(s)	363, 450
Tru9I	TTAA	2 cut(s)	363, 450
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	4 cut(s)	20, 276, 408, 425
TspGWI	ACGGA	1 cut(s)	190
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	248, 347
XspI	CTAG	2 cut(s)	36, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.