MD17G1003600.v1.1

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005983
Physical Location & Seq
Reverse (-)
324220 .. 325939
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1003600.v1.1.491

Sequence Viewer

Length: 360 bp
ATGCCGAATTTGAGTATGCTTGTCGTGCACTACTTTTCCTGTTTCCAGCTCAAAGACTATCGTTCTTTGTATGAAGGCTATGTCCCTATGAAGTACAAGCGCTATCACAAGAAAATGGCAAAATCTGGTGAATGGGGAGATCATGTTACCTTACAAGCAGCAGCTGACAAGTTTTCAGCAAAGATTTGCCTTTTGACATCATTCAGAGATACTTGCTATATTGAAATTATGCCTCAGTACCAGCCACCAAAATGTGAGTTGTGGCTGAGTTTTTGGTCCGAGGTTCATTACAATTCATTATATGAAACCCGAGACGCTCCAATTCAACAGAAACCAAGGAGGAAACACTGGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

120

Amino Acids

14.38

Weight (kDa)

9.16

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 2 cut(s) 95, 239
AfeI AGCGCT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 224, 326
AluBI AGCT 2 cut(s) 49, 164
AluI AGCT 2 cut(s) 49, 164
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 309
Aor51HI AGCGCT 1 cut(s) 101
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 2 cut(s) 158, 161
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 170, 173
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 358
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 2 cut(s) 159, 162
BlsI GCNGC 2 cut(s) 160, 163
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 279, 335
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 279, 335
BseMII CTCAG 2 cut(s) 248, 257
BseNI ACTGG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 2 cut(s) 170, 173
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 306
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 247, 258
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 279, 335
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 234, 266
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 170, 173
BtsIMutI CAGTG 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 94, 238
CviAII CATG 1 cut(s) 143
CviJI RGCY 5 cut(s) 49, 78, 164, 244, 265
CviKI_1 RGCY 5 cut(s) 49, 78, 164, 244, 265
CviQI GTAC 2 cut(s) 94, 238
DdeI CTNAG 2 cut(s) 234, 266
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 276
Eco47III AGCGCT 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 1 cut(s) 146
FaiI YATR 9 cut(s) 17, 72, 81, 89, 144, 219, 230, 301, 303
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 159, 162
Fsp4HI GCNGC 2 cut(s) 159, 162
FspBI CTAG 1 cut(s) 358
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 159, 162
HaeII RGCGCY 1 cut(s) 103
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 206, 280
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 234, 266
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 5 cut(s) 52, 59, 111, 254, 334
Lsp1109I GCAGC 2 cut(s) 170, 173
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 7, 225, 292, 321
MnlI CCTC 3 cut(s) 243, 274, 333
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 146
PkrI GCNGC 2 cut(s) 160, 163
PspPI GGNCC 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 95, 239
RsaNI GTAC 2 cut(s) 94, 238
RseI CAYNNNNRTG 1 cut(s) 250
SatI GCNGC 2 cut(s) 159, 162
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 276
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 51, 152, 166, 285
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 250
Sse9I AATT 4 cut(s) 7, 225, 292, 321
SspMI CTAG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 335
TasI AATT 4 cut(s) 7, 225, 292, 321
TatI WGTACW 1 cut(s) 93
TscAI CASTG 1 cut(s) 353
TseI GCWGC 2 cut(s) 158, 161
TspDTI ATGAA 5 cut(s) 87, 104, 275, 285, 318
TspRI CASTG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 1 cut(s) 7
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.