RH2BG686700

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0005983
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG686700.1

Sequence Viewer

Length: 846 bp
ATGAATCAGCTAACCAACCACCCTCACGAAAAAGAGTGCAAGTTGGATAGGAATCAAGGATCAAATTCAGCAATAACTTGGGTTGCGAGTCAAACACCTCTACGCGGCCGTCGGACAACGGTCGTCTCCGATTTCAAGATTCAACCTTGTTCGGATTTTGCAATCAGAAATCTGCGATCGGTCCACTTGTTGTTCTTGAATTGCTCTACTTCCCTGAGCAGCCAGCAGGATGTTGATGATGACTGCATGATTGCCGTTGTACTATCAGAAGAATATGCTAAGTTGGATGGGGCAGTTGCTAGACGCCTTTCCAACCTGGCACCTATTCCGCATATCCCACGGATAAATTCCTACATCCCCAACATAAGTGATGCAAGTTTGGATCATCAACGGCTTCTCCAGAGGTTGCATGTCTATCGTTTATATGAAGTAAAGGTTTCTGGTGATGGCAATTGTCAGTTTCGCGCACTTTCAGAACAGATTTACAAATCTCCAGATTATCACAAGCATGTGCGGAAAGAGATTGTTAAACAGCTCAAAGACTATCGTTCTCAATATGAAGGCTATGTCCCTATGAAGTACAAACACTATTACAAGAAAATGGCAAAATCCGGTGAATGGGGTGATCATGTTACCTTACAAGCAGCAGCTGATAAGTTTGAAGCGAAGATTTGTCTTTTGACATCATTCAGAGATACTTGCTTTATTGAAATTATGCCTCAATTCCAGCCACCAAAACGTGAGTTGTGGCTGAGTTTCTGGTCTGAGGTTCATTACAATTCATTATATGAAATCCAAGATGCTCCAATTGAACAAAAACCGAGGAGGAAACACTGGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

281

Amino Acids

32.88

Weight (kDa)

8.94

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 148 - 253 5.8e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccII CGCG 2 cut(s) 105, 465
AciI CCGC 3 cut(s) 105, 329, 514
AclWI GGATC 2 cut(s) 67, 390
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 64, 346
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 2 cut(s) 261, 581
AfiI CCNNNNNNNGG 2 cut(s) 104, 618
AgsI TTSAA 6 cut(s) 136, 143, 199, 662, 710, 812
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 3 cut(s) 10, 535, 650
AluI AGCT 3 cut(s) 10, 535, 650
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 67, 390
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 219, 644, 647
ApoI RAATTY 2 cut(s) 64, 346
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 455, 626, 635
AvaII GGWCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 319
BbvI GCAGC 3 cut(s) 231, 656, 659
BccI CCATC 2 cut(s) 281, 440
BceAI ACGGC 3 cut(s) 93, 239, 407
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 2 cut(s) 300, 844
BisI GCNGC 4 cut(s) 106, 220, 645, 648
BlsI GCNGC 4 cut(s) 107, 221, 646, 649
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 361, 790
BoxI GACNNNNGTC 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 383, 477
Bpu10I CCTNAGC 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 338, 821
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 618
Bse1I ACTGG 1 cut(s) 839
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 338, 821
BseGI GGATG 3 cut(s) 235, 292, 354
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 104, 618
BseMII CTCAG 3 cut(s) 206, 743, 756
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 1 cut(s) 838
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 231, 656, 659
Bsh1236I CGCG 2 cut(s) 105, 465
Bsh1285I CGRYCG 3 cut(s) 109, 123, 179
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 319
BsiEI CGRYCG 3 cut(s) 109, 123, 179
BsiSI CCGG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 104, 618
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 4 cut(s) 59, 176, 382, 625
BspACI CCGC 3 cut(s) 105, 329, 514
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 207, 744, 757
BspFNI CGCG 2 cut(s) 105, 465
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 2 cut(s) 67, 390
BspT107I GGYRCC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 2 cut(s) 338, 821
BssMI GATC 4 cut(s) 59, 176, 382, 625
BssNI GRCGYC 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 215, 279, 752, 765
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 235, 292, 354
BstFNI CGCG 2 cut(s) 105, 465
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 62, 179, 385, 628
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 59, 176, 382, 625
BstMCI CGRYCG 3 cut(s) 109, 123, 179
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 413, 512
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 2 cut(s) 105, 465
BstV1I GCAGC 3 cut(s) 231, 656, 659
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 3 cut(s) 235, 292, 354
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 650
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 312
Csp6I GTAC 2 cut(s) 260, 580
CviAII CATG 4 cut(s) 247, 410, 509, 629
CviJI RGCY 9 cut(s) 10, 108, 222, 394, 535, 564, 650, 730, 751
CviKI_1 RGCY 9 cut(s) 10, 108, 222, 394, 535, 564, 650, 730, 751
CviQI GTAC 2 cut(s) 260, 580
DdeI CTNAG 4 cut(s) 215, 279, 752, 765
DpnI GATC 4 cut(s) 61, 178, 384, 627
DpnII GATC 4 cut(s) 59, 176, 382, 625
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 4 cut(s) 250, 413, 512, 632
FaqI GGGAC 1 cut(s) 554
FatI CATG 4 cut(s) 246, 409, 508, 628
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 106, 220, 645, 648
FokI GGATG 3 cut(s) 242, 299, 341
Fsp4HI GCNGC 4 cut(s) 106, 220, 645, 648
FspBI CTAG 2 cut(s) 300, 844
GlaI GCGC 1 cut(s) 466
GluI GCNGC 4 cut(s) 106, 220, 645, 648
GsuI CTGGAG 2 cut(s) 383, 477
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 612
HgaI GACGC 1 cut(s) 312
HhaI GCGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 4 cut(s) 250, 413, 512, 632
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 4 cut(s) 4, 52, 88, 139
HpaII CCGG 1 cut(s) 612
HphI GGTGA 3 cut(s) 455, 626, 635
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 8 cut(s) 114, 130, 154, 167, 268, 475, 692, 766
Hpy188III TCNNGA 5 cut(s) 26, 136, 196, 400, 494
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 739
HpyCH4V TGCA 5 cut(s) 39, 161, 246, 374, 409
HpyF3I CTNAG 4 cut(s) 215, 279, 752, 765
HpySE526I ACGT 1 cut(s) 739
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 4 cut(s) 250, 413, 512, 632
HspAI GCGC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 4 cut(s) 59, 176, 382, 625
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 3 cut(s) 231, 656, 659
LweI GCATC 2 cut(s) 361, 790
MaeI CTAG 2 cut(s) 300, 844
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 61, 178, 384, 627
MboI GATC 4 cut(s) 59, 176, 382, 625
MboII GAAGA 2 cut(s) 281, 679
MfeI CAATTG 2 cut(s) 451, 807
MluCI AATT 8 cut(s) 64, 199, 346, 451, 711, 722, 778, 807
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 4 cut(s) 24, 92, 264, 336
MnlI CCTC 7 cut(s) 33, 108, 396, 729, 760, 816, 819
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 612
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 2 cut(s) 451, 807
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 2 cut(s) 105, 465
NdeII GATC 4 cut(s) 59, 176, 382, 625
NlaIII CATG 4 cut(s) 250, 413, 512, 632
NlaIV GGNNCC 1 cut(s) 321
NspI RCATGY 2 cut(s) 413, 512
PfeI GAWTC 3 cut(s) 4, 52, 139
PkrI GCNGC 4 cut(s) 107, 221, 646, 649
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PshAI GACNNNNGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 650
PvuI CGATCG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 2 cut(s) 261, 581
RsaNI GTAC 2 cut(s) 260, 580
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 4 cut(s) 106, 220, 645, 648
Sau3AI GATC 4 cut(s) 59, 176, 382, 625
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 317
SfaNI GCATC 2 cut(s) 361, 790
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 8 cut(s) 64, 199, 346, 451, 711, 722, 778, 807
SsiI CCGC 3 cut(s) 105, 329, 514
SspMI CTAG 2 cut(s) 300, 844
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 742
TaqII GACCGA 1 cut(s) 169
TasI AATT 8 cut(s) 64, 199, 346, 451, 711, 722, 778, 807
TatI WGTACW 2 cut(s) 259, 579
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 3 cut(s) 4, 52, 139
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 839
TseI GCWGC 3 cut(s) 219, 644, 647
TspDTI ATGAA 7 cut(s) 17, 441, 573, 590, 761, 771, 804
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 2 cut(s) 64, 346
XceI RCATGY 2 cut(s) 413, 512
XspI CTAG 2 cut(s) 300, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.