pycom17g00040

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005983
Physical Location & Seq
Reverse (-)
38378 .. 41132
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00040.1

Sequence Viewer

Length: 681 bp
ATGATGAACGTGACTCACAGTGTTGACAAATGTTCTAGCTCAACTTCCTTGAGCAGCCAACAGGATGTTGAGGATGACTGCATGATTGCTGTTGTACTATCAGAAGAGTATGCTAAGTTAGATGGTGCAGTTGCTAGGCGCCTTTCCAACCTGGCACCTGTTCCTCATGTTCCACGGGTAAATTCCTACATCCCCAATATAACTGATGCTGGTTTGGATCACCAACGCCTTCTCCAGAGGTTACATGTCCATAGTTTATATGAAGTAAAGGTTTCTGGTGATGGAAATTGTCAGTTTCGTGCACTTTCAGACCAAATGTACAAATCTCCAGAGTATCACAAACATGTTCGAAAAGAGATTGTGAAGCAGCTCAAAGACTATCGTTCTTTGTATGAAGGCTATGTCCCTATGAAGTACAAGCGCTATCACAAGAAAATGGCAAAATCTGGTGAATGGGGAGATCATGTTACCTTACAAGCAGCAGCTGACAAGTTTTCAGCAAAGATTTGCCTTTTGACATCATTCAGAGATACTTGCTTTATTGAAATTATGCCTCAGTACCAGCCACCAAAACGTGAGTTGTGGCTGAGTTTTTGGTCCGAGGTTCATTACAATTCATTATATGAAATCCGAGACGCTCCAATTCAACAGAAACCAAGGAGGAAACACTGGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

227

Amino Acids

26.38

Weight (kDa)

8.96

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 93 - 200 4e-13 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 138, 154
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 4 cut(s) 96, 320, 416, 560
AfeI AGCGCT 1 cut(s) 422
AflIII ACRYGT 2 cut(s) 244, 343
AgsI TTSAA 2 cut(s) 545, 647
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 3 cut(s) 39, 370, 485
AluI AGCT 3 cut(s) 39, 370, 485
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 627
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 485
Aor51HI AGCGCT 1 cut(s) 422
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 4 cut(s) 54, 367, 479, 482
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 2 cut(s) 141, 423
AspS9I GGNCC 1 cut(s) 597
AsuHPI GGTGA 3 cut(s) 212, 290, 461
AsuII TTCGAA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 597
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 2 cut(s) 138, 154
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 4 cut(s) 66, 379, 491, 494
BccI CCATC 2 cut(s) 116, 275
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 3 cut(s) 36, 135, 679
BfoI RGCGCY 2 cut(s) 142, 424
BisI GCNGC 4 cut(s) 55, 368, 480, 483
BlsI GCNGC 4 cut(s) 56, 369, 481, 484
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 597
BmiI GGNNCC 2 cut(s) 140, 156
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 218, 312
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 173, 600, 656
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 450, 480
Bse1I ACTGG 1 cut(s) 674
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 173, 600, 656
BseGI GGATG 3 cut(s) 70, 79, 189
BseMII CTCAG 2 cut(s) 569, 578
BseNI ACTGG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 4 cut(s) 66, 379, 491, 494
BsgI GTGCAG 1 cut(s) 147
BshNI GGYRCC 2 cut(s) 138, 154
BsiHKAI GWGCWC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 2 cut(s) 217, 460
BspCNI CTCAG 2 cut(s) 568, 579
BspLI GGNNCC 2 cut(s) 140, 156
BspPI GGATC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 2 cut(s) 138, 154
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 674
BssECI CCNNGG 3 cut(s) 173, 600, 656
BssMI GATC 2 cut(s) 217, 460
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 139
BstAUI TGTACA 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 114, 555, 587
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 3 cut(s) 70, 79, 189
BstH2I RGCGCY 2 cut(s) 142, 424
BstHHI GCGC 2 cut(s) 141, 423
BstKTI GATC 2 cut(s) 220, 463
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 2 cut(s) 217, 460
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 248, 347
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 66, 379, 491, 494
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 3 cut(s) 70, 79, 189
BtsIMutI CAGTG 2 cut(s) 25, 667
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 141, 423
Cfr13I GGNCC 1 cut(s) 597
CseI GACGC 1 cut(s) 644
Csp6I GTAC 4 cut(s) 95, 319, 415, 559
CviAII CATG 5 cut(s) 82, 167, 245, 344, 464
CviJI RGCY 7 cut(s) 39, 57, 370, 399, 485, 565, 586
CviKI_1 RGCY 7 cut(s) 39, 57, 370, 399, 485, 565, 586
CviQI GTAC 4 cut(s) 95, 319, 415, 559
DdeI CTNAG 3 cut(s) 114, 555, 587
DinI GGCGCC 1 cut(s) 140
DpnI GATC 2 cut(s) 219, 462
DpnII GATC 2 cut(s) 217, 460
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 597
Eco47III AGCGCT 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 656
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 656
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 5 cut(s) 85, 170, 248, 347, 467
FaqI GGGAC 1 cut(s) 389
FatI CATG 5 cut(s) 81, 166, 244, 343, 463
Fnu4HI GCNGC 4 cut(s) 55, 368, 480, 483
FokI GGATG 3 cut(s) 77, 86, 176
Fsp4HI GCNGC 4 cut(s) 55, 368, 480, 483
FspBI CTAG 3 cut(s) 36, 135, 679
GlaI GCGC 2 cut(s) 140, 422
GluI GCNGC 4 cut(s) 55, 368, 480, 483
GsuI CTGGAG 2 cut(s) 218, 312
HaeII RGCGCY 2 cut(s) 142, 424
HgaI GACGC 1 cut(s) 644
HhaI GCGC 2 cut(s) 141, 423
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 5 cut(s) 85, 170, 248, 347, 467
Hin6I GCGC 2 cut(s) 139, 421
HinP1I GCGC 2 cut(s) 139, 421
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 13
HphI GGTGA 3 cut(s) 212, 290, 461
Hpy166II GTNNAC 2 cut(s) 25, 302
Hpy188I TCNGA 5 cut(s) 103, 310, 527, 601, 632
Hpy188III TCNNGA 2 cut(s) 235, 329
Hpy8I GTNNAC 2 cut(s) 25, 302
HpyAV CCTTC 2 cut(s) 239, 389
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 9, 574
HpyCH4V TGCA 3 cut(s) 81, 128, 302
HpyF3I CTNAG 3 cut(s) 114, 555, 587
HpySE526I ACGT 2 cut(s) 9, 574
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 5 cut(s) 85, 170, 248, 347, 467
HspAI GCGC 2 cut(s) 139, 421
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 217, 460
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 4 cut(s) 66, 379, 491, 494
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 36, 135, 679
MaeII ACGT 2 cut(s) 9, 574
MaeIII GTNAC 3 cut(s) 10, 240, 466
MalI GATC 2 cut(s) 219, 462
MboI GATC 2 cut(s) 217, 460
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 5 cut(s) 181, 286, 546, 613, 642
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 6 cut(s) 64, 174, 231, 564, 595, 654
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NarI GGCGCC 1 cut(s) 139
NdeII GATC 2 cut(s) 217, 460
NlaIII CATG 5 cut(s) 85, 170, 248, 347, 467
NlaIV GGNNCC 2 cut(s) 140, 156
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 2 cut(s) 248, 347
NspV TTCGAA 1 cut(s) 349
PciI ACATGT 2 cut(s) 244, 343
PkrI GCNGC 4 cut(s) 56, 369, 481, 484
PleI GAGTC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 7
PscI ACATGT 2 cut(s) 244, 343
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 140, 156
PspPI GGNCC 1 cut(s) 597
PstNI CAGNNNCTG 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 96, 320, 416, 560
RsaNI GTAC 4 cut(s) 95, 319, 415, 559
RseI CAYNNNNRTG 1 cut(s) 342
SatI GCNGC 4 cut(s) 55, 368, 480, 483
Sau3AI GATC 2 cut(s) 217, 460
Sau96I GGNCC 1 cut(s) 597
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 5 cut(s) 181, 286, 546, 613, 642
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 3 cut(s) 36, 135, 679
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 2 cut(s) 12, 577
TaqI TCGA 1 cut(s) 349
TasI AATT 5 cut(s) 181, 286, 546, 613, 642
TatI WGTACW 3 cut(s) 94, 318, 414
TscAI CASTG 2 cut(s) 25, 674
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 4 cut(s) 54, 367, 479, 482
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 7 cut(s) 20, 276, 408, 425, 596, 606, 639
TspRI CASTG 2 cut(s) 25, 674
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 1 cut(s) 181
XceI RCATGY 2 cut(s) 248, 347
XspI CTAG 3 cut(s) 36, 135, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.