Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000468.1

Orthogroup ID

OG0005983

Physical Location & Seq

Genomic Coordinates Reverse (-)

23213 .. 27029

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000468.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggatcggctaaccaaccaccctcacgaaaaagagtgcaagttggataggaatcaaggatcaaattcagcaataacttcggttgcgagtcaaacatctctacgcggccgtcggactacggtcgtctccgatttcaagattcaaccttgttcggattttgcaatcagaaatctgcgatcggtccacttgttgttcttgaattggaggagcagagtctctacttccctgagcagccagcaggatgttgatgatgactgcatgattgccgttgtactatcagaagagtatgctaagttggatggtgcagttgctagacgcctttccaacctggcacctattccgcatatcccacggataaattcctacatccccaacataagtgatgcaagtttggatcatcaacggcttctccagaggttgcatgtctatcgtttatatgaagtaaaggtttctggtgatggcaattgtcagtttcgcgcactttcagaccagatttacaagtctccagattatcacaagcatgtgcggaaagagattgttaaacagatcaaagactatcgttctcaatatgaaggctatgtccctatgaagtacaaacactattacaagaaaatggcaaaatccggtgaatggggtgatcatgttaccttacaagcagcagctgataagtttgaagcgaagatttgtcttttgacatcattcagagatacttgctttattgaaattatgcctcaattccagccaccaaaacgtggattgtgggcacttggcttaattgtttcagccaaaatccctgaaaataacttgtgcttcttcccagtttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

275

Amino Acids

31.61

Weight (kDa)

9.24

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02070 AT3G02070
fragaria_vesca	FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451 FvH4_6g54451
malus_domestica	MD09G1000900.v1.1 MD17G1003600.v1.1
prunus_persica	Prupe.3G315400_v2.0.a1 Prupe.3G315400_v2.0.a1
pyrus_communis	pycom111g00060 pycom17g00040
rosa_chinensis	RchiOBHm_Chr2g0176721
rosa_laevigata	RLG00000022440
rosa_multiflora	Rmu_ssc0000468.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076220
rosa_rugosa	Rorug02G0598100 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200 Rorug02G0598200
rosa_samantha	Rh2AG675400 Rh2BG686700 Rh2CG650000 Rh2DG700900
rosa_wichuraiana	Rw2G055430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccII	CGCG	2 cut(s)	105, 477
AciI	CCGC	3 cut(s)	105, 341, 526
AclWI	GGATC	3 cut(s)	12, 67, 402
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	64, 358
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	273, 593
AfiI	CCNNNNNNNGG	2 cut(s)	630, 752
AgsI	TTSAA	5 cut(s)	136, 143, 199, 674, 722
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	662
AluI	AGCT	1 cut(s)	662
Alw26I	GTCTC	3 cut(s)	130, 220, 507
AlwI	GGATC	3 cut(s)	12, 67, 402
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	231, 656, 659
ApoI	RAATTY	2 cut(s)	64, 358
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	467, 638, 647
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	243, 668, 671
BccI	CCATC	2 cut(s)	293, 452
BceAI	ACGGC	3 cut(s)	93, 251, 419
BcgI	CGANNNNNNTGC	4 cut(s)	60, 94, 410, 444
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	130, 220, 507
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	4 cut(s)	106, 232, 657, 660
BlsI	GCNGC	4 cut(s)	107, 233, 658, 661
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	812
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	395, 489
Bpu10I	CCTNAGC	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	630, 752
Bse1I	ACTGG	1 cut(s)	818
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	247, 304, 366
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	630, 752
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	818
BseRI	GAGGAG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	766
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	243, 668, 671
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	105, 477
Bsh1285I	CGRYCG	3 cut(s)	109, 123, 179
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	331
BsiEI	CGRYCG	3 cut(s)	109, 123, 179
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	630, 752
BsmAI	GTCTC	3 cut(s)	130, 220, 507
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
BspACI	CCGC	3 cut(s)	105, 341, 526
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	2 cut(s)	105, 477
BspHI	TCATGA	1 cut(s)	824
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	3 cut(s)	12, 67, 402
BspT107I	GGYRCC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	818
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
BssNI	GRCGYC	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	227, 291
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	247, 304, 366
BstFNI	CGCG	2 cut(s)	105, 477
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	6 cut(s)	7, 62, 179, 397, 549, 640
BstMAI	GTCTC	3 cut(s)	130, 220, 507
BstMBI	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
BstMCI	CGRYCG	3 cut(s)	109, 123, 179
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	425, 524
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	766
BstUI	CGCG	2 cut(s)	105, 477
BstV1I	GCAGC	3 cut(s)	243, 668, 671
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	3 cut(s)	247, 304, 366
Cac8I	GCNNGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	824
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	272, 592
CviAII	CATG	5 cut(s)	259, 422, 521, 641, 825
CviJI	RGCY	9 cut(s)	10, 108, 234, 406, 576, 662, 742, 771, 785
CviKI_1	RGCY	9 cut(s)	10, 108, 234, 406, 576, 662, 742, 771, 785
CviQI	GTAC	2 cut(s)	272, 592
DdeI	CTNAG	2 cut(s)	227, 291
DpnI	GATC	6 cut(s)	6, 61, 178, 396, 548, 639
DpnII	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	5 cut(s)	262, 425, 524, 644, 828
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	5 cut(s)	258, 421, 520, 640, 824
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	4 cut(s)	106, 232, 657, 660
FokI	GGATG	3 cut(s)	254, 311, 353
Fsp4HI	GCNGC	4 cut(s)	106, 232, 657, 660
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	4 cut(s)	106, 232, 657, 660
GsuI	CTGGAG	2 cut(s)	395, 489
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	624
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	262, 425, 524, 644, 828
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	4 cut(s)	52, 88, 139, 213
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	3 cut(s)	467, 638, 647
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	7 cut(s)	114, 130, 154, 167, 280, 487, 704
Hpy188III	TCNNGA	6 cut(s)	26, 136, 196, 412, 506, 825
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	6 cut(s)	39, 161, 258, 305, 386, 421
HpyF3I	CTNAG	2 cut(s)	227, 291
HpySE526I	ACGT	1 cut(s)	751
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	262, 425, 524, 644, 828
HspAI	GCGC	1 cut(s)	477
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	3 cut(s)	243, 668, 671
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	751
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	6 cut(s)	6, 61, 178, 396, 548, 639
MboI	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
MboII	GAAGA	3 cut(s)	293, 691, 805
MfeI	CAATTG	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	7 cut(s)	64, 199, 358, 463, 723, 734, 774
MlyI	GAGTC	2 cut(s)	97, 222
MmeI	TCCRAC	4 cut(s)	24, 92, 276, 348
MnlI	CCTC	4 cut(s)	33, 198, 408, 741
MseI	TTAA	2 cut(s)	540, 773
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	2 cut(s)	105, 477
NdeII	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
NlaIII	CATG	5 cut(s)	262, 425, 524, 644, 828
NlaIV	GGNNCC	1 cut(s)	333
NspI	RCATGY	2 cut(s)	425, 524
PagI	TCATGA	1 cut(s)	824
PfeI	GAWTC	2 cut(s)	52, 139
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	4 cut(s)	107, 233, 658, 661
Ple19I	CGATCG	1 cut(s)	179
PleI	GAGTC	2 cut(s)	96, 221
PpsI	GAGTC	2 cut(s)	96, 221
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	662
PvuI	CGATCG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	273, 593
RsaNI	GTAC	2 cut(s)	272, 592
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	540, 773
SatI	GCNGC	4 cut(s)	106, 232, 657, 660
Sau3AI	GATC	6 cut(s)	4, 59, 176, 394, 546, 637
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	2 cut(s)	97, 222
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	766
SetI	ASST	8 cut(s)	148, 330, 337, 419, 450, 650, 664, 754
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	7 cut(s)	64, 199, 358, 463, 723, 734, 774
SsiI	CCGC	3 cut(s)	105, 341, 526
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	754
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	7 cut(s)	64, 199, 358, 463, 723, 734, 774
TatI	WGTACW	2 cut(s)	271, 591
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	52, 139
Tru1I	TTAA	2 cut(s)	540, 773
Tru9I	TTAA	2 cut(s)	540, 773
TseI	GCWGC	3 cut(s)	231, 656, 659
TspDTI	ATGAA	4 cut(s)	453, 585, 602, 813
TspGWI	ACGGA	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	64, 358
XceI	RCATGY	2 cut(s)	425, 524
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.