Prupe.3G315400_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
27226699 .. 27234703
8005 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G315400.2

Sequence Viewer

Length: 1629 bp
ATGGAACACCCAAGCAATGATGACCAATGCAAGAGTTCAGTGGTAGTAACATATGGGAATCAAGTTACTGATAAAGTGAAAGAAAGGTCAAGAGACCAAAGAGAACCTCTTCCAGGGGAGCCTAAATGTGTTATATGTAACCGTTATGGCGAGTATATATGCGATCAGACAGATGATGACATTTGCAGTTTGGAGTGTAAACAGACTGTCCTCTGCAGGGTTGCCAACACCCAATTGCCAGTCAACCTACCACCTCCCAAAAGATTAACTGCTACTGATGAGTGCTTTTATGTTCGAGATTCTGGTAGTCAATCAGGATCTGTATTCTTCTCTAGTGACCAGACTGAATTGCTTAGAAGCAGACTTGAAATTCATGTGAAGGGAGACTTAGTTCCGCCACCTATCTTGTCCTTCTCTTCATGTAATTTTCCTCAAAAGCTCCTCCAAAATATAGAGGCTGCAGGTTTTGAAATGCCAACACCTGTCCAAATGCAAGCAATCCCAGCTGCTTTGAGTGGAAAAAGTTTGCTTGTGTCTGCTGAAACAGGGTCTGGGAAAACGGCTTCCTTTCTGGTTCCAATTGTTTATCTTTGTGCAAATTTTCGCTTTGAGCAGTTTAGAGACCGGAAAAAGCCGTTAGCAATGGTTCTAACACCAACCAGAGAGCTCTGTATACAAGTTGAGGAGCAAGCTAAGTTGCTCGGAAAGGGTTTGCCTTTTAAAACAGCACTTGTGGTTGGTGGTGATGCGATGGCCAGACAACTTCACCGCATTCAGCAAGGAGTGGAGCTCATCGTGGGAACTCCAGGCAGGCTAATTGATCTTTTAACGAAGAATGATATACAACTGGATGATGTAAAGATTTTTGGTCTTGATGAGGTGGACTGCATGTTTCAAAGGGGATTCCGAGATCAGTGTGATAAGAATTTGAAAACAGACGACGACATTATGATGAACGGGACTCACAGTGTGGGGGAATGTTCTAGCTCAACTTCCCTGAGCAGCCAACAGGATGTTGAGGATGACTGCATGATTGCTGTTGTACTATCAGAAGAGTATGCTAAGTTAGATGGTGCAGTTGCTAGACGCCTTTCCAACCTGGCACCTGTTCCTCACATTCCTCGGATAAATTCCTACATCCCCAACATTAGTGATGCTAGTTTGGACCATCAACGGCTTCTCCAGAGGTTACATGTCTATGGTTTATACGAAGTAAAGGTTTCTGGTGATGGAAACTGTCAGTTTCGTGCACTTTCAGATCAAATGTACAAGTCTCCAGAGTATCACAAGCATGTCCGGAAAGAGATTGTGAAACAGCTCAAAGACTATCATTCTTTGTATGAAGGCTATGTCCCTATGAAGTACAAACGCTATTACAAGAAAATGGCAAAATCTGGTGAATGGGGGGATCATGTTACCTTACAAGCAGCAGCTGACAAGTTTGAAGCGAAGATTTGCCTTTTGACATCATTCAGAGATACTTGCTTTATTGAAATTATGCCTCAGTACCAGCCACCAAAACGTGAACTGTGGCTGAGTTTTTGGTCTGAGGTTCATTACAATTCACTATATGAAATCCGAGATGCTCCAATTCAACAGAAGCCAAGGAGGAAACACTGGTTGTTCTAG

Protein Analysis

543

Amino Acids

61.53

Weight (kDa)

6.52

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 1102
AccI GTMKAC 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 1296
AciI CCGC 2 cut(s) 395, 769
AclWI GGATC 2 cut(s) 325, 1416
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 4 cut(s) 369, 598, 925, 1129
AcyI GRCGYC 1 cut(s) 1087
AdeI CACNNNGTG 1 cut(s) 970
AfaI GTAC 4 cut(s) 1044, 1268, 1364, 1508
AfiI CCNNNNNNNGG 2 cut(s) 113, 217
AflIII ACRYGT 1 cut(s) 1192
AgsI TTSAA 7 cut(s) 368, 470, 896, 931, 1445, 1493, 1595
AjnI CCWGG 3 cut(s) 112, 805, 1098
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 8 cut(s) 439, 506, 667, 692, 790, 987, 1318, 1433
AluI AGCT 8 cut(s) 439, 506, 667, 692, 790, 987, 1318, 1433
Alw21I GWGCWC 3 cut(s) 669, 792, 1252
Alw26I GTCTC 4 cut(s) 87, 378, 615, 1278
Alw44I GTGCAC 1 cut(s) 1248
AlwI GGATC 2 cut(s) 325, 1416
AlwNI CAGNNNCTG 3 cut(s) 320, 551, 1433
Aor13HI TCCGGA 1 cut(s) 1296
AoxI GGCC 1 cut(s) 753
ApaLI GTGCAC 1 cut(s) 1248
ApeKI GCWGC 5 cut(s) 458, 506, 1002, 1427, 1430
ApoI RAATTY 4 cut(s) 369, 598, 925, 1129
Asp700I GAANNNNTTC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 1165
AsuHPI GGTGA 4 cut(s) 755, 758, 1238, 1409
AvaII GGWCC 1 cut(s) 1165
BaeGI GKGCMC 1 cut(s) 1252
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 2 cut(s) 669, 792
Bbv12I GWGCWC 3 cut(s) 669, 792, 1252
BbvI GCAGC 5 cut(s) 445, 493, 1014, 1439, 1442
BccI CCATC 4 cut(s) 745, 1064, 1176, 1223
BceAI ACGGC 3 cut(s) 576, 619, 1190
BciT130I CCWGG 3 cut(s) 114, 807, 1100
BcoDI GTCTC 4 cut(s) 87, 378, 615, 1278
BfaI CTAG 5 cut(s) 333, 984, 1083, 1158, 1627
BfmI CTRYAG 2 cut(s) 214, 459
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 5 cut(s) 459, 507, 1003, 1428, 1431
BlsI GCNGC 5 cut(s) 460, 508, 1004, 1429, 1432
Bme1390I CCNGG 3 cut(s) 114, 807, 1100
Bme18I GGWCC 1 cut(s) 1165
BmgT120I GGNCC 1 cut(s) 1165
BmiI GGNNCC 3 cut(s) 120, 576, 1104
BmrFI CCNGG 3 cut(s) 114, 807, 1100
BmsI GCATC 3 cut(s) 736, 1144, 1573
BplI GAGNNNNNCTC 2 cut(s) 774, 806
BpmI CTGGAG 3 cut(s) 789, 1166, 1260
Bpu10I CCTNAGC 1 cut(s) 998
BsaHI GRCGYC 1 cut(s) 1087
BsaI GGTCTC 2 cut(s) 87, 615
BsaJI CCNNGG 3 cut(s) 113, 1121, 1604
BsaWI WCCGGW 2 cut(s) 624, 1296
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 1164, 1194
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 217
Bse1I ACTGG 3 cut(s) 239, 852, 1622
Bse3DI GCAATG 2 cut(s) 22, 648
BseAI TCCGGA 1 cut(s) 1296
BseBI CCWGG 3 cut(s) 114, 807, 1100
BseDI CCNNGG 3 cut(s) 113, 1121, 1604
BseGI GGATG 4 cut(s) 856, 1018, 1027, 1137
BseLI CCNNNNNNNGG 2 cut(s) 113, 217
BseMI GCAATG 2 cut(s) 22, 648
BseMII CTCAG 4 cut(s) 989, 1517, 1526, 1539
BseNI ACTGG 3 cut(s) 239, 852, 1622
BseRI GAGGAG 2 cut(s) 431, 698
BseSI GKGCMC 1 cut(s) 1252
BseXI GCAGC 5 cut(s) 445, 493, 1014, 1439, 1442
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 1095
BshFI GGCC 1 cut(s) 755
BshNI GGYRCC 1 cut(s) 1102
BsiHKAI GWGCWC 3 cut(s) 669, 792, 1252
BsiSI CCGG 2 cut(s) 625, 1297
BslFI GGGAC 2 cut(s) 973, 1337
BslI CCNNNNNNNGG 2 cut(s) 113, 217
BsmAI GTCTC 4 cut(s) 87, 378, 615, 1278
BsmFI GGGAC 2 cut(s) 973, 1337
BsmI GAATGC 1 cut(s) 771
BsnI GGCC 1 cut(s) 755
Bso31I GGTCTC 2 cut(s) 87, 615
Bsp1286I GDGCHC 3 cut(s) 669, 792, 1252
Bsp13I TCCGGA 1 cut(s) 1296
Bsp1407I TGTACA 1 cut(s) 1266
Bsp143I GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
BspACI CCGC 2 cut(s) 395, 769
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 4 cut(s) 990, 1516, 1527, 1540
BspEI TCCGGA 1 cut(s) 1296
BspLI GGNNCC 3 cut(s) 120, 576, 1104
BspMAI CTGCAG 2 cut(s) 218, 463
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 2 cut(s) 325, 1416
BspT107I GGYRCC 1 cut(s) 1102
BspTNI GGTCTC 2 cut(s) 87, 615
BsrDI GCAATG 2 cut(s) 22, 648
BsrGI TGTACA 1 cut(s) 1266
BsrI ACTGG 3 cut(s) 239, 852, 1622
BssECI CCNNGG 3 cut(s) 113, 1121, 1604
BssMI GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
BssNAI GTATAC 1 cut(s) 674
BssNI GRCGYC 1 cut(s) 1087
BssT1I CCWWGG 1 cut(s) 1604
Bst1107I GTATAC 1 cut(s) 674
Bst2UI CCWGG 3 cut(s) 114, 807, 1100
Bst4CI ACNGT 5 cut(s) 143, 208, 968, 1238, 1530
Bst6I CTCTTC 3 cut(s) 114, 421, 1047
BstACI GRCGYC 1 cut(s) 1087
BstAUI TGTACA 1 cut(s) 1266
BstC8I GCNNGC 3 cut(s) 495, 690, 812
BstDEI CTNAG 8 cut(s) 353, 388, 693, 998, 1062, 1503, 1535, 1548
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 856, 1018, 1027, 1137
BstKTI GATC 6 cut(s) 166, 320, 823, 913, 1261, 1411
BstMAI GTCTC 4 cut(s) 87, 378, 615, 1278
BstMBI GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNI CCWGG 3 cut(s) 114, 807, 1100
BstNSI RCATGY 3 cut(s) 892, 1196, 1295
BstSCI CCNGG 3 cut(s) 112, 805, 1098
BstSFI CTRYAG 2 cut(s) 214, 459
BstSLI GKGCMC 1 cut(s) 1252
BstV1I GCAGC 5 cut(s) 445, 493, 1014, 1439, 1442
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BstZ17I GTATAC 1 cut(s) 674
BsuRI GGCC 1 cut(s) 755
BtgZI GCGATG 1 cut(s) 764
BtsCI GGATG 4 cut(s) 856, 1018, 1027, 1137
BtsIMutI CAGTG 4 cut(s) 45, 920, 973, 1615
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 3 cut(s) 495, 690, 812
CaiI CAGNNNCTG 3 cut(s) 320, 551, 1433
Cfr13I GGNCC 1 cut(s) 1165
CseI GACGC 1 cut(s) 1095
Csp6I GTAC 4 cut(s) 1043, 1267, 1363, 1507
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 7 cut(s) 374, 420, 889, 1030, 1193, 1292, 1412
CviQI GTAC 4 cut(s) 1043, 1267, 1363, 1507
DdeI CTNAG 8 cut(s) 353, 388, 693, 998, 1062, 1503, 1535, 1548
DpnI GATC 6 cut(s) 165, 319, 822, 912, 1260, 1410
DpnII GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
DraI TTTAAA 1 cut(s) 721
DraIII CACNNNGTG 1 cut(s) 970
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 3 cut(s) 114, 421, 1047
EarI CTCTTC 3 cut(s) 114, 421, 1047
EciI GGCGGA 1 cut(s) 384
Ecl136II GAGCTC 2 cut(s) 667, 790
Eco130I CCWWGG 1 cut(s) 1604
Eco24I GRGCYC 2 cut(s) 669, 792
Eco31I GGTCTC 2 cut(s) 87, 615
Eco47I GGWCC 1 cut(s) 1165
Eco53kI GAGCTC 2 cut(s) 667, 790
EcoICRI GAGCTC 2 cut(s) 667, 790
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 112, 805, 1098
EcoT14I CCWWGG 1 cut(s) 1604
EcoT38I GRGCYC 2 cut(s) 669, 792
ErhI CCWWGG 1 cut(s) 1604
FaeI CATG 7 cut(s) 377, 423, 892, 1033, 1196, 1295, 1415
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 973, 1337
FatI CATG 7 cut(s) 373, 419, 888, 1029, 1192, 1291, 1411
FauNDI CATATG 1 cut(s) 52
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 5 cut(s) 459, 507, 1003, 1428, 1431
FokI GGATG 4 cut(s) 863, 1025, 1034, 1124
FriOI GRGCYC 2 cut(s) 669, 792
Fsp4HI GCNGC 5 cut(s) 459, 507, 1003, 1428, 1431
FspBI CTAG 5 cut(s) 333, 984, 1083, 1158, 1627
GluI GCNGC 5 cut(s) 459, 507, 1003, 1428, 1431
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 3 cut(s) 789, 1166, 1260
HaeIII GGCC 1 cut(s) 755
HapII CCGG 2 cut(s) 625, 1297
HgaI GACGC 1 cut(s) 1095
Hin1I GRCGYC 1 cut(s) 1087
Hin1II CATG 7 cut(s) 377, 423, 892, 1033, 1196, 1295, 1415
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 4 cut(s) 58, 299, 903, 961
HpaII CCGG 2 cut(s) 625, 1297
HphI GGTGA 4 cut(s) 755, 758, 1238, 1409
Hpy166II GTNNAC 6 cut(s) 200, 244, 674, 883, 1250, 1526
Hpy188I TCNGA 9 cut(s) 168, 704, 908, 1051, 1125, 1258, 1475, 1549, 1580
Hpy188III TCNNGA 7 cut(s) 90, 296, 315, 872, 1183, 1277, 1297
Hpy8I GTNNAC 6 cut(s) 200, 244, 674, 883, 1250, 1526
Hpy99I CGWCG 1 cut(s) 944
HpyAV CCTTC 3 cut(s) 373, 421, 1337
HpyCH4III ACNGT 5 cut(s) 143, 208, 968, 1238, 1530
HpyCH4IV ACGT 1 cut(s) 1522
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 8 cut(s) 353, 388, 693, 998, 1062, 1503, 1535, 1548
HpySE526I ACGT 1 cut(s) 1522
Hsp92I GRCGYC 1 cut(s) 1087
Hsp92II CATG 7 cut(s) 377, 423, 892, 1033, 1196, 1295, 1415
Kpn2I TCCGGA 1 cut(s) 1296
Kzo9I GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
LmnI GCTCC 5 cut(s) 118, 444, 685, 787, 1591
Lsp1109I GCAGC 5 cut(s) 445, 493, 1014, 1439, 1442
LweI GCATC 3 cut(s) 736, 1144, 1573
MaeI CTAG 5 cut(s) 333, 984, 1083, 1158, 1627
MaeII ACGT 1 cut(s) 1522
MaeIII GTNAC 6 cut(s) 46, 64, 137, 335, 1188, 1414
MalI GATC 6 cut(s) 165, 319, 822, 912, 1260, 1410
MboI GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
MboII GAAGA 6 cut(s) 101, 319, 408, 844, 1064, 1462
MfeI CAATTG 2 cut(s) 233, 579
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 3 cut(s) 669, 792, 1252
MlsI TGGCCA 1 cut(s) 755
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 955
MmeI TCCRAC 1 cut(s) 1119
Mox20I TGGCCA 1 cut(s) 755
MroI TCCGGA 1 cut(s) 1296
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 1 cut(s) 755
MseI TTAA 3 cut(s) 266, 720, 827
MslI CAYNNNNRTG 3 cut(s) 950, 1197, 1290
Msp20I TGGCCA 1 cut(s) 755
MspA1I CMGCKG 2 cut(s) 506, 1433
MspI CCGG 2 cut(s) 625, 1297
MspR9I CCNGG 3 cut(s) 114, 807, 1100
MunI CAATTG 2 cut(s) 233, 579
Mva1269I GAATGC 1 cut(s) 771
MvaI CCWGG 3 cut(s) 114, 807, 1100
MwoI GCNNNNNNNGC 1 cut(s) 503
NdeI CATATG 1 cut(s) 52
NdeII GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
NlaIII CATG 7 cut(s) 377, 423, 892, 1033, 1196, 1295, 1415
NlaIV GGNNCC 3 cut(s) 120, 576, 1104
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 3 cut(s) 892, 1196, 1295
PciI ACATGT 1 cut(s) 1192
PctI GAATGC 1 cut(s) 771
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 58, 299, 903
PkrI GCNGC 5 cut(s) 460, 508, 1004, 1429, 1432
PleI GAGTC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 955
PscI ACATGT 1 cut(s) 1192
Psp124BI GAGCTC 2 cut(s) 669, 792
Psp6I CCWGG 3 cut(s) 112, 805, 1098
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 3 cut(s) 112, 805, 1098
PspN4I GGNNCC 3 cut(s) 120, 576, 1104
PspPI GGNCC 1 cut(s) 1165
PstI CTGCAG 2 cut(s) 218, 463
PstNI CAGNNNCTG 3 cut(s) 320, 551, 1433
PsuI RGATCY 1 cut(s) 317
PvuII CAGCTG 2 cut(s) 506, 1433
RsaI GTAC 4 cut(s) 1044, 1268, 1364, 1508
RsaNI GTAC 4 cut(s) 1043, 1267, 1363, 1507
RseI CAYNNNNRTG 3 cut(s) 950, 1197, 1290
SacI GAGCTC 2 cut(s) 669, 792
SaqAI TTAA 3 cut(s) 266, 720, 827
SatI GCNGC 5 cut(s) 459, 507, 1003, 1428, 1431
Sau3AI GATC 6 cut(s) 163, 317, 820, 910, 1258, 1408
Sau96I GGNCC 1 cut(s) 1165
SchI GAGTC 1 cut(s) 955
ScrFI CCNGG 3 cut(s) 114, 807, 1100
SduI GDGCHC 3 cut(s) 669, 792, 1252
SfaNI GCATC 3 cut(s) 736, 1144, 1573
SfcI CTRYAG 2 cut(s) 214, 459
SinI GGWCC 1 cut(s) 1165
SmiMI CAYNNNNRTG 3 cut(s) 950, 1197, 1290
SsiI CCGC 2 cut(s) 395, 769
SspMI CTAG 5 cut(s) 333, 984, 1083, 1158, 1627
SstI GAGCTC 2 cut(s) 669, 792
StyD4I CCNGG 3 cut(s) 112, 805, 1098
StyI CCWWGG 1 cut(s) 1604
TaaI ACNGT 5 cut(s) 143, 208, 968, 1238, 1530
TaiI ACGT 1 cut(s) 1525
TaqI TCGA 1 cut(s) 295
TatI WGTACW 3 cut(s) 1042, 1266, 1362
TfiI GAWTC 3 cut(s) 58, 299, 903
Tru1I TTAA 3 cut(s) 266, 720, 827
Tru9I TTAA 3 cut(s) 266, 720, 827
TscAI CASTG 4 cut(s) 45, 920, 973, 1622
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 5 cut(s) 458, 506, 1002, 1427, 1430
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 7 cut(s) 362, 408, 968, 1356, 1373, 1544, 1587
TspRI CASTG 4 cut(s) 45, 920, 973, 1622
VneI GTGCAC 1 cut(s) 1248
VpaK11BI GGWCC 1 cut(s) 1165
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 4 cut(s) 369, 598, 925, 1129
XceI RCATGY 3 cut(s) 892, 1196, 1295
XmiI GTMKAC 1 cut(s) 673
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 5 cut(s) 333, 984, 1083, 1158, 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.