Rh2AG675500

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010061
Physical Location & Seq
Reverse (-)
88723565 .. 88726341
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG675500.1

Sequence Viewer

Length: 1212 bp
ATGATGCAGAAATTGACGAGAAAAGTGTTTGATTCCCAGGCAAATGGAAAGGGCTTTGCAGAATTCTCAGGTCTCCGCAACTCATCTGCAGCTTCGCTTTCTTTCGGAAGGAGAACCTCAGACGACTTCTTTTCGGTCATTGCCTTCCAAACCTCTGCTGCGGGAACTAACGGGGGATACCAAAGAGGGATAACGGAGGCGAAGCTGAAGGTGGCTATAAATGGGTTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGGCGCAAGGACTCACCTCTTGATGTGATTGCCATCAACGACACCGGAGGCGTGAAGCAGGCGTCTCACCTCCTCAAGTACGACTCTACCCTCGGGATCTTCGACGCTGACGTCAAGCCAGTTGGCGATGATGGCATCTCTGTTGACGGCAAGGTCATCAAGGTTGTGTCAAGCCGCAATCCCCTCAACCTACCTTGGAAGGACATGGGGATCGACCTGGTGATTGAAGGCACTGGAGTGTTTGTTGATAGGGAGGGTGCCGGGAAACACATAGAGGCAGGGGCCAAGAAGGTGCTCATCACTGCCCCCGGAAAAGGCGACATCCCTACCTATGTGGTCGGGGTCAATGCTGAACTCTATAGTCATGATGATACCATCATTAGCAATGCTTCTTGCACCACCAACTGCCTTGCCCCCTTCGTCAAGGTTCTTGACCAGAAGTTTGGCATCATCAAGGGCACCATGACTACCACACACTCCTACACTGGTGACCAGAGGCTACTTGATGCTAGCCACCGTGACCTCAGGCGTGCACGAGCTGCTGCTCTCAACATAGTTCCCACTTCAACTGGTGCAGCAAAGGCCGTTGCTCTAGTCCTTCCATCTCTCAAAGGAAAGCTAAATGGCATTGCCCTGCGTGTGCCCACCCCCAATGTCTCCGTCGTCGACCTTGTTGTCCAGGTCACTAAGAAGACCTTTGCAGAGGAGGTTAATGCTGCTTTCAGAGAGAGTGCTGATAAGGAGCTGGCAGGTATCCTTTCTGTTTGCGATGAGCCCCTTGTTTCTGTCGATTTCAGGTGCACAGATGTATCGTCAACAGTTGACTCCTCATTGACTATGGTGATGGGAGATGACATGGTCAAGGTCATTGCTTGGTACGATAACGAATGGGGTTACTCACAAAGGGTTGTTGACTTGGCTGATATTGTCGCCAACAACTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

403

Amino Acids

43.29

Weight (kDa)

8.16

Isoelectric Point (pI)

21.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 70 - 171 4.4e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 225 - 381 4.5e-66 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12900 AT1G12900 AT1G12900 AT1G12900 AT3G26650
fragaria_vesca FvH4_6g54460
malus_domestica MD09G1000800.v1.1 MD17G1003500.v1.1
prunus_persica Prupe.3G315500_v2.0.a1
pyrus_communis pycom111g00050 pycom17g00030
rosa_chinensis RchiOBHm_Chr2g0176741
rosa_laevigata RLG00000022441
rosa_multiflora Rmu_ssc0000468.1_g000003
rosa_roxburghii Rroxscaffold_2G00076200
rosa_rugosa Rorug02G0598200
rosa_samantha Rh2AG675500 Rh2BG686800 Rh2CG650100 Rh2DG701000
rosa_wichuraiana Rw2G055440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 374, 416, 938
AatII GACGTC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 1004
AccB1I GGYRCC 2 cut(s) 521, 722
AccB7I CCANNNNNTGG 1 cut(s) 1203
AccI GTMKAC 1 cut(s) 930
AciI CCGC 3 cut(s) 76, 161, 439
AclWI GGATC 2 cut(s) 368, 482
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 2 cut(s) 326, 375
AfaI GTAC 2 cut(s) 344, 1142
AfiI CCNNNNNNNGG 2 cut(s) 578, 1203
AgsI TTSAA 2 cut(s) 491, 831
AjnI CCWGG 3 cut(s) 36, 480, 942
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 5 cut(s) 92, 205, 803, 883, 1009
AluI AGCT 5 cut(s) 92, 205, 803, 883, 1009
Alw21I GWGCWC 3 cut(s) 561, 799, 1067
Alw26I GTCTC 3 cut(s) 77, 333, 925
Alw44I GTGCAC 2 cut(s) 795, 1063
AlwI GGATC 2 cut(s) 368, 482
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 2 cut(s) 546, 846
ApaLI GTGCAC 2 cut(s) 795, 1063
ApeKI GCWGC 6 cut(s) 89, 158, 803, 806, 839, 980
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 546
AsuC2I CCSGG 2 cut(s) 526, 573
AsuHPI GGTGA 5 cut(s) 270, 323, 496, 764, 1117
AsuNHI GCTAGC 1 cut(s) 773
AvaI CYCGRG 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 788
BaeGI GKGCMC 4 cut(s) 725, 799, 909, 1067
BaeI ACNNNNGTAYC 2 cut(s) 1056, 1089
BanI GGYRCC 2 cut(s) 521, 722
BanII GRGCYC 1 cut(s) 1041
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 3 cut(s) 561, 799, 1067
BbvI GCAGC 6 cut(s) 101, 145, 790, 793, 851, 967
BccI CCATC 5 cut(s) 305, 389, 647, 874, 1102
BceAI ACGGC 2 cut(s) 427, 833
BciT130I CCWGG 3 cut(s) 38, 482, 944
BciVI GTATCC 2 cut(s) 170, 1028
BcnI CCSGG 2 cut(s) 526, 573
BcoDI GTCTC 3 cut(s) 77, 333, 925
BfaI CTAG 2 cut(s) 774, 857
BfmI CTRYAG 2 cut(s) 87, 622
BfuAI ACCTGC 1 cut(s) 1004
BfuI GTATCC 2 cut(s) 170, 1028
BisI GCNGC 7 cut(s) 90, 159, 439, 804, 807, 840, 981
BlsI GCNGC 7 cut(s) 91, 160, 440, 805, 808, 841, 982
Bme1390I CCNGG 5 cut(s) 38, 482, 526, 573, 944
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 546
BmiI GGNNCC 3 cut(s) 523, 547, 724
BmrFI CCNGG 5 cut(s) 38, 482, 526, 573, 944
BmsI GCATC 3 cut(s) 408, 720, 760
BmtI GCTAGC 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 962
BpmI CTGGAG 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 271, 323
BpuMI CCSGG 2 cut(s) 526, 573
BsaBI GATNNNNATC 1 cut(s) 296
BsaHI GRCGYC 2 cut(s) 326, 375
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 36, 355, 458, 571
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 578, 1203
Bse1I ACTGG 5 cut(s) 383, 502, 754, 838, 1208
Bse21I CCTNAGG 1 cut(s) 788
Bse3DI GCAATG 4 cut(s) 138, 655, 891, 1131
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 3 cut(s) 38, 482, 944
BseDI CCNNGG 4 cut(s) 36, 355, 458, 571
BseGI GGATG 1 cut(s) 585
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 578, 1203
BseMI GCAATG 4 cut(s) 138, 655, 891, 1131
BseMII CTCAG 3 cut(s) 81, 132, 802
BseNI ACTGG 5 cut(s) 383, 502, 754, 838, 1208
BseRI GAGGAG 3 cut(s) 326, 983, 1081
BseSI GKGCMC 4 cut(s) 725, 799, 909, 1067
BseXI GCAGC 6 cut(s) 101, 145, 790, 793, 851, 967
BsgI GTGCAG 1 cut(s) 858
BshFI GGCC 2 cut(s) 548, 848
BshNI GGYRCC 2 cut(s) 521, 722
BsiHKAI GWGCWC 3 cut(s) 561, 799, 1067
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 3 cut(s) 309, 525, 573
BslI CCNNNNNNNGG 2 cut(s) 578, 1203
BsmAI GTCTC 3 cut(s) 77, 333, 925
BsmBI CGTCTC 1 cut(s) 333
BsnI GGCC 2 cut(s) 548, 848
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 6 cut(s) 561, 725, 799, 909, 1041, 1067
Bsp143I GATC 2 cut(s) 360, 474
BspACI CCGC 3 cut(s) 76, 161, 439
BspANI GGCC 2 cut(s) 548, 848
BspCNI CTCAG 3 cut(s) 80, 131, 801
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 3 cut(s) 523, 547, 724
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 1004
BspOI GCTAGC 1 cut(s) 777
BspPI GGATC 2 cut(s) 368, 482
BspT107I GGYRCC 2 cut(s) 521, 722
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 4 cut(s) 138, 655, 891, 1131
BsrI ACTGG 5 cut(s) 383, 502, 754, 838, 1208
BssECI CCNNGG 4 cut(s) 36, 355, 458, 571
BssMI GATC 2 cut(s) 360, 474
BssNI GRCGYC 2 cut(s) 326, 375
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 3 cut(s) 38, 482, 944
Bst4CI ACNGT 2 cut(s) 782, 1084
BstACI GRCGYC 2 cut(s) 326, 375
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 5 cut(s) 260, 324, 775, 795, 1011
BstDEI CTNAG 4 cut(s) 67, 118, 788, 951
BstEII GGTNACC 1 cut(s) 752
BstF5I GGATG 1 cut(s) 585
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 363, 477
BstMAI GTCTC 3 cut(s) 77, 333, 925
BstMBI GATC 2 cut(s) 360, 474
BstMWI GCNNNNNNNGC 3 cut(s) 396, 803, 845
BstNI CCWGG 3 cut(s) 38, 482, 944
BstPI GGTNACC 1 cut(s) 752
BstSCI CCNGG 5 cut(s) 36, 480, 524, 571, 942
BstSFI CTRYAG 2 cut(s) 87, 622
BstSLI GKGCMC 4 cut(s) 725, 799, 909, 1067
BstV1I GCAGC 6 cut(s) 101, 145, 790, 793, 851, 967
BstV2I GAAGAC 1 cut(s) 962
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 2 cut(s) 44, 707
BstYI RGATCY 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 788
BsuI GTATCC 2 cut(s) 170, 1028
BsuRI GGCC 2 cut(s) 548, 848
BtgZI GCGATG 2 cut(s) 405, 1047
BtsCI GGATG 1 cut(s) 585
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 3 cut(s) 495, 564, 747
BveI ACCTGC 1 cut(s) 1004
Cac8I GCNNGC 5 cut(s) 260, 324, 775, 795, 1011
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 546
CseI GACGC 2 cut(s) 315, 377
CsiI ACCWGGT 1 cut(s) 480
Csp6I GTAC 2 cut(s) 343, 1141
CviAII CATG 5 cut(s) 263, 469, 629, 727, 1120
CviQI GTAC 2 cut(s) 343, 1141
DdeI CTNAG 4 cut(s) 67, 118, 788, 951
DpnI GATC 2 cut(s) 362, 476
DpnII GATC 2 cut(s) 360, 474
DrdI GACNNNNNNGTC 3 cut(s) 374, 416, 938
DseDI GACNNNNNNGTC 3 cut(s) 374, 416, 938
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 1041
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 227
Eco81I CCTNAGG 1 cut(s) 788
Eco88I CYCGRG 1 cut(s) 356
Eco91I GGTNACC 1 cut(s) 752
EcoO65I GGTNACC 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 62
EcoRII CCWGG 3 cut(s) 36, 480, 942
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 1041
ErhI CCWWGG 1 cut(s) 458
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 5 cut(s) 266, 472, 632, 730, 1123
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FatI CATG 5 cut(s) 262, 468, 628, 726, 1119
FauI CCCGC 1 cut(s) 154
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 7 cut(s) 90, 159, 439, 804, 807, 840, 981
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 1 cut(s) 1041
Fsp4HI GCNGC 7 cut(s) 90, 159, 439, 804, 807, 840, 981
FspBI CTAG 2 cut(s) 774, 857
GlaI GCGC 1 cut(s) 269
GluI GCNGC 7 cut(s) 90, 159, 439, 804, 807, 840, 981
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 2 cut(s) 548, 848
HapII CCGG 3 cut(s) 309, 525, 573
HgaI GACGC 2 cut(s) 315, 377
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 2 cut(s) 326, 375
Hin1II CATG 5 cut(s) 266, 472, 632, 730, 1123
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 5 cut(s) 409, 931, 1080, 1087, 1177
HindII GTYRAC 5 cut(s) 409, 931, 1080, 1087, 1177
HinfI GANTC 4 cut(s) 32, 275, 347, 1088
HpaII CCGG 3 cut(s) 309, 525, 573
HphI GGTGA 5 cut(s) 270, 323, 496, 764, 1117
Hpy166II GTNNAC 7 cut(s) 409, 797, 931, 1065, 1080, 1087, 1177
Hpy188I TCNGA 3 cut(s) 107, 121, 989
Hpy188III TCNNGA 5 cut(s) 250, 284, 358, 629, 695
Hpy8I GTNNAC 7 cut(s) 409, 797, 931, 1065, 1080, 1087, 1177
Hpy99I CGWCG 3 cut(s) 371, 929, 932
HpyAV CCTTC 9 cut(s) 102, 154, 202, 234, 457, 485, 547, 691, 872
HpyCH4III ACNGT 2 cut(s) 782, 1084
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 8 cut(s) 7, 59, 89, 660, 797, 839, 965, 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 803, 845
HpyF3I CTNAG 4 cut(s) 67, 118, 788, 951
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 2 cut(s) 326, 375
Hsp92II CATG 5 cut(s) 266, 472, 632, 730, 1123
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 360, 474
LmnI GCTCC 1 cut(s) 1006
Lsp1109I GCAGC 6 cut(s) 101, 145, 790, 793, 851, 967
LweI GCATC 3 cut(s) 408, 720, 760
MabI ACCWGGT 1 cut(s) 480
MaeI CTAG 2 cut(s) 774, 857
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 4 cut(s) 752, 782, 946, 1157
MalI GATC 2 cut(s) 362, 476
MboI GATC 2 cut(s) 360, 474
MboII GAAGA 3 cut(s) 243, 355, 967
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 6 cut(s) 561, 725, 799, 909, 1041, 1067
MluCI AATT 3 cut(s) 11, 62, 234
MlyI GAGTC 3 cut(s) 269, 341, 1082
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 3 cut(s) 309, 525, 573
MspR9I CCNGG 5 cut(s) 38, 482, 526, 573, 944
MvaI CCWGG 3 cut(s) 38, 482, 944
MwoI GCNNNNNNNGC 3 cut(s) 396, 803, 845
NciI CCSGG 2 cut(s) 526, 573
NdeII GATC 2 cut(s) 360, 474
NheI GCTAGC 1 cut(s) 773
NlaIII CATG 5 cut(s) 266, 472, 632, 730, 1123
NlaIV GGNNCC 3 cut(s) 523, 547, 724
NmuCI GTSAC 3 cut(s) 752, 782, 946
OliI CACNNNNGTG 1 cut(s) 500
PagI TCATGA 1 cut(s) 628
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 372
PfeI GAWTC 1 cut(s) 32
PflFI GACNNNGTC 1 cut(s) 1121
PflMI CCANNNNNTGG 1 cut(s) 1203
PkrI GCNGC 7 cut(s) 91, 160, 440, 805, 808, 841, 982
PleI GAGTC 3 cut(s) 269, 341, 1082
PpsI GAGTC 3 cut(s) 269, 341, 1082
Psp6I CCWGG 3 cut(s) 36, 480, 942
PspEI GGTNACC 1 cut(s) 752
PspGI CCWGG 3 cut(s) 36, 480, 942
PspN4I GGNNCC 3 cut(s) 523, 547, 724
PspPI GGNCC 1 cut(s) 546
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 360
PsyI GACNNNGTC 1 cut(s) 1121
RsaI GTAC 2 cut(s) 344, 1142
RsaNI GTAC 2 cut(s) 343, 1141
RseI CAYNNNNRTG 1 cut(s) 500
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 7 cut(s) 90, 159, 439, 804, 807, 840, 981
Sau3AI GATC 2 cut(s) 360, 474
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 3 cut(s) 269, 341, 1082
ScrFI CCNGG 5 cut(s) 38, 482, 526, 573, 944
SduI GDGCHC 6 cut(s) 561, 725, 799, 909, 1041, 1067
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 3 cut(s) 408, 720, 760
SfcI CTRYAG 2 cut(s) 87, 622
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 2 cut(s) 250, 338
SmoI CTYRAG 2 cut(s) 250, 338
Sse9I AATT 3 cut(s) 11, 62, 234
SsiI CCGC 3 cut(s) 76, 161, 439
SspMI CTAG 2 cut(s) 774, 857
StyD4I CCNGG 5 cut(s) 36, 480, 524, 571, 942
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 782, 1084
TaiI ACGT 1 cut(s) 378
TaqI TCGA 4 cut(s) 366, 477, 930, 1053
TaqII GACCGA 1 cut(s) 124
TasI AATT 3 cut(s) 11, 62, 234
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 3 cut(s) 502, 571, 754
TseFI GTSAC 3 cut(s) 752, 782, 946
TseI GCWGC 6 cut(s) 89, 158, 803, 806, 839, 980
Tsp45I GTSAC 3 cut(s) 752, 782, 946
TspGWI ACGGA 2 cut(s) 209, 913
TspRI CASTG 3 cut(s) 502, 571, 754
Tth111I GACNNNGTC 1 cut(s) 1121
Van91I CCANNNNNTGG 1 cut(s) 1203
VneI GTGCAC 2 cut(s) 795, 1063
XapI RAATTY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 930
XspI CTAG 2 cut(s) 774, 857
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.