AT3G26650

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
9794862 .. 9797045
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26650.1

Sequence Viewer

Length: 1191 bp
ATGGCTTCGGTTACTTTCTCTGTCCCCAAGGGTTTCACTGAATTCTCAGGATTGCGAAGCTCCTCTGCTTCTCTTCCCTTCGGCAAGAAACTTTCTTCCGATGAGTTCGTTTCCATCGTCTCCTTCCAGACTTCTGCAATGGGAAGCAGTGGTGGATACAGGAAAGGTGTGACTGAGGCCAAGCTTAAGGTGGCCATTAATGGATTCGGTAGGATCGGGAGGAACTTCCTGAGATGTTGGCATGGTCGCAAGGACTCTCCTCTTGATATCATTGCCATTAATGACACTGGTGGCGTCAAGCAGGCTTCGCATTTACTTAAATACGACTCTACTCTCGGAATCTTTGATGCTGATGTCAAACCTTCTGGAGAGACTGCAATCTCTGTTGATGGAAAGATCATCCAAGTTGTCTCTAACCGAAACCCGTCTCTTCTCCCTTGGAAGGAGCTAGGAATTGACATTGTCATCGAAGGAACCGGAGTGTTTGTGGATAGAGAAGGTGCAGGGAAACACATTGAAGCTGGTGCCAAGAAGGTTATCATTACTGCTCCAGGCAAAGGAGATATTCCAACTTATGTCGTTGGTGTCAATGCAGATGCTTACAGTCATGATGAACCTATCATCAGCAATGCATCTTGCACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCTACTTCTACAGGAGCAGCTAAAGCTGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGGGATCGCTCTCCGTGTACCAACACCAAACGTATCAGTGGTTGATCTCGTTGTGCAGGTCTCAAAGAAGACATTTGCTGAGGAAGTCAACGCTGCTTTCAGAGATTCTGCAGAGAAAGAGCTTAAAGGTATACTCGATGTCTGCGATGAGCCACTAGTGTCCGTTGATTTCAGATGCTCAGATTTTTCAACGACCATTGATTCATCACTCACTATGGTTATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAGAGAGTTGTTGACTTGGCTGACATTGTTGCCAACAACTGGAAGTGA

Protein Analysis

396

Amino Acids

42.49

Weight (kDa)

7.62

Isoelectric Point (pI)

23.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 63 - 164 3.6e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 218 - 374 9.1e-67 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010061)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 524
AccB7I CCANNNNNTGG 1 cut(s) 1182
AccI GTMKAC 1 cut(s) 997
AccII CGCG 1 cut(s) 752
AclWI GGATC 2 cut(s) 221, 878
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 2 cut(s) 41, 683
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 703, 885
AfiI CCNNNNNNNGG 3 cut(s) 442, 557, 1182
AflII CTTAAG 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 728
AgsI TTSAA 3 cut(s) 518, 793, 1056
AhlI ACTAGT 1 cut(s) 1021
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 8 cut(s) 60, 184, 448, 521, 785, 821, 827, 988
AluI AGCT 8 cut(s) 60, 184, 448, 521, 785, 821, 827, 988
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 5 cut(s) 124, 365, 415, 432, 931
AlwI GGATC 2 cut(s) 221, 878
AoxI GGCC 2 cut(s) 177, 192
ApeKI GCWGC 4 cut(s) 782, 785, 818, 959
ApoI RAATTY 2 cut(s) 41, 683
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AseI ATTAAT 2 cut(s) 198, 279
AsiGI ACCGGT 1 cut(s) 728
AsuHPI GGTGA 3 cut(s) 743, 749, 1120
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 941
Bbv12I GWGCWC 1 cut(s) 843
BbvCI CCTCAGC 1 cut(s) 945
BbvI GCAGC 4 cut(s) 772, 794, 830, 946
BccI CCATC 2 cut(s) 122, 383
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 149
BcoDI GTCTC 5 cut(s) 124, 365, 415, 432, 931
BcuI ACTAGT 1 cut(s) 1021
BfaI CTAG 3 cut(s) 449, 746, 1022
BfmI CTRYAG 2 cut(s) 810, 975
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 913
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 4 cut(s) 783, 786, 819, 960
BlsI GCNGC 4 cut(s) 784, 787, 820, 961
Bme1390I CCNGG 1 cut(s) 552
BmiI GGNNCC 2 cut(s) 475, 526
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 4 cut(s) 337, 586, 641, 1031
BoxI GACNNNNGTC 1 cut(s) 753
BpiI GAAGAC 1 cut(s) 941
BpmI CTGGAG 2 cut(s) 387, 534
Bpu10I CCTNAGC 1 cut(s) 945
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 931
BsaJI CCNNGG 2 cut(s) 27, 437
BsaWI WCCGGW 2 cut(s) 476, 728
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 557, 1182
Bse118I RCCGGY 1 cut(s) 728
Bse1I ACTGG 2 cut(s) 292, 1187
Bse3DI GCAATG 3 cut(s) 144, 270, 634
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 27, 437
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 3 cut(s) 442, 557, 1182
BseMI GCAATG 3 cut(s) 144, 270, 634
BseMII CTCAG 5 cut(s) 60, 165, 221, 936, 1059
BseNI ACTGG 2 cut(s) 292, 1187
BseRI GAGGAG 2 cut(s) 52, 249
BseXI GCAGC 4 cut(s) 772, 794, 830, 946
BsgI GTGCAG 2 cut(s) 522, 941
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 2 cut(s) 179, 194
BshNI GGYRCC 1 cut(s) 524
BshTI ACCGGT 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 843
BsiSI CCGG 2 cut(s) 477, 729
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 3 cut(s) 442, 557, 1182
BsmAI GTCTC 5 cut(s) 124, 365, 415, 432, 931
BsmBI CGTCTC 2 cut(s) 124, 432
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 2 cut(s) 179, 194
Bso31I GGTCTC 1 cut(s) 931
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 5 cut(s) 213, 396, 763, 870, 910
BspANI GGCC 2 cut(s) 179, 194
BspCNI CTCAG 5 cut(s) 59, 166, 222, 937, 1058
BspFNI CGCG 1 cut(s) 752
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 475, 526
BspMAI CTGCAG 1 cut(s) 979
BspMI ACCTGC 1 cut(s) 913
BspPI GGATC 2 cut(s) 221, 878
BspT107I GGYRCC 1 cut(s) 524
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 931
BsrDI GCAATG 3 cut(s) 144, 270, 634
BsrFI RCCGGY 1 cut(s) 728
BsrI ACTGG 2 cut(s) 292, 1187
BssAI RCCGGY 1 cut(s) 728
BssECI CCNNGG 2 cut(s) 27, 437
BssMI GATC 5 cut(s) 213, 396, 763, 870, 910
BssNAI GTATAC 1 cut(s) 998
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 27, 437
Bst1107I GTATAC 1 cut(s) 998
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 605, 650, 761
Bst6I CTCTTC 2 cut(s) 78, 435
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 6 cut(s) 46, 174, 230, 767, 945, 1045
BstEII GGTNACC 1 cut(s) 731
BstF5I GGATG 1 cut(s) 399
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 5 cut(s) 216, 399, 766, 873, 913
BstMAI GTCTC 5 cut(s) 124, 365, 415, 432, 931
BstMBI GATC 5 cut(s) 213, 396, 763, 870, 910
BstMWI GCNNNNNNNGC 3 cut(s) 307, 782, 824
BstNI CCWGG 1 cut(s) 552
BstPAI GACNNNNGTC 1 cut(s) 753
BstPI GGTNACC 1 cut(s) 731
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 2 cut(s) 810, 975
BstUI CGCG 1 cut(s) 752
BstV1I GCAGC 4 cut(s) 772, 794, 830, 946
BstV2I GAAGAC 1 cut(s) 941
BstZ17I GTATAC 1 cut(s) 998
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 179, 194
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 1 cut(s) 399
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 4 cut(s) 36, 154, 285, 909
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 1 cut(s) 303
CciI TCATGA 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 728
CseI GACGC 2 cut(s) 283, 758
Csp6I GTAC 2 cut(s) 702, 884
CspAI ACCGGT 1 cut(s) 728
CviAII CATG 2 cut(s) 242, 608
CviQI GTAC 2 cut(s) 702, 884
DdeI CTNAG 6 cut(s) 46, 174, 230, 767, 945, 1045
DpnI GATC 5 cut(s) 215, 398, 765, 872, 912
DpnII GATC 5 cut(s) 213, 396, 763, 870, 910
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 78, 435
EarI CTCTTC 2 cut(s) 78, 435
Eco130I CCWWGG 2 cut(s) 27, 437
Eco31I GGTCTC 1 cut(s) 931
Eco32I GATATC 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 731
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 550
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 27, 437
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 27, 437
Esp3I CGTCTC 2 cut(s) 124, 432
FaeI CATG 2 cut(s) 245, 611
FaiI YATR 9 cut(s) 243, 576, 609, 695, 998, 1082, 1088, 1100, 1122
FaqI GGGAC 1 cut(s) 8
FatI CATG 2 cut(s) 241, 607
FblI GTMKAC 1 cut(s) 997
Fnu4HI GCNGC 4 cut(s) 783, 786, 819, 960
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 4 cut(s) 783, 786, 819, 960
FspBI CTAG 3 cut(s) 449, 746, 1022
GluI GCNGC 4 cut(s) 783, 786, 819, 960
GsuI CTGGAG 2 cut(s) 387, 534
HaeIII GGCC 2 cut(s) 179, 194
HapII CCGG 2 cut(s) 477, 729
HgaI GACGC 2 cut(s) 283, 758
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 2 cut(s) 245, 611
HincII GTYRAC 2 cut(s) 955, 1156
HindII GTYRAC 2 cut(s) 955, 1156
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 7 cut(s) 204, 254, 326, 339, 754, 971, 1067
HpaII CCGG 2 cut(s) 477, 729
HphI GGTGA 3 cut(s) 743, 749, 1120
Hpy166II GTNNAC 4 cut(s) 884, 955, 998, 1156
Hpy188I TCNGA 5 cut(s) 100, 338, 968, 1040, 1048
Hpy188III TCNNGA 8 cut(s) 48, 127, 217, 229, 263, 366, 608, 674
Hpy8I GTNNAC 4 cut(s) 884, 955, 998, 1156
HpyAV CCTTC 7 cut(s) 88, 133, 372, 436, 464, 491, 526
HpyCH4III ACNGT 3 cut(s) 605, 650, 761
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 8 cut(s) 137, 377, 503, 593, 632, 639, 922, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 782, 824
HpyF3I CTNAG 6 cut(s) 46, 174, 230, 767, 945, 1045
HpySE526I ACGT 1 cut(s) 897
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 2 cut(s) 245, 611
Kzo9I GATC 5 cut(s) 213, 396, 763, 870, 910
LmnI GCTCC 6 cut(s) 65, 445, 553, 661, 815, 846
Lsp1109I GCAGC 4 cut(s) 772, 794, 830, 946
LweI GCATC 4 cut(s) 337, 586, 641, 1031
MaeI CTAG 3 cut(s) 449, 746, 1022
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 5 cut(s) 10, 169, 731, 755, 1136
MalI GATC 5 cut(s) 215, 398, 765, 872, 912
MboI GATC 5 cut(s) 213, 396, 763, 870, 910
MboII GAAGA 4 cut(s) 65, 87, 422, 946
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 3 cut(s) 41, 453, 683
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 3 cut(s) 248, 320, 763
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 7 cut(s) 73, 169, 213, 270, 732, 860, 940
Mox20I TGGCCA 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 634
MscI TGGCCA 1 cut(s) 194
MseI TTAA 6 cut(s) 186, 198, 279, 318, 990, 1104
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 785
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 2 cut(s) 477, 729
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 3 cut(s) 307, 782, 824
NdeII GATC 5 cut(s) 213, 396, 763, 870, 910
NlaIII CATG 2 cut(s) 245, 611
NlaIV GGNNCC 2 cut(s) 475, 526
NmuCI GTSAC 3 cut(s) 169, 731, 755
NsiI ATGCAT 1 cut(s) 634
PagI TCATGA 1 cut(s) 607
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 1008
PfeI GAWTC 4 cut(s) 204, 339, 971, 1067
PflFI GACNNNGTC 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 1182
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 4 cut(s) 784, 787, 820, 961
PleI GAGTC 3 cut(s) 248, 320, 762
PpsI GAGTC 3 cut(s) 248, 320, 762
PshAI GACNNNNGTC 1 cut(s) 753
PshBI ATTAAT 2 cut(s) 198, 279
Psp6I CCWGG 1 cut(s) 550
PspEI GGTNACC 1 cut(s) 731
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 475, 526
PstI CTGCAG 1 cut(s) 979
PsyI GACNNNGTC 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 703, 885
RsaNI GTAC 2 cut(s) 702, 884
SaqAI TTAA 6 cut(s) 186, 198, 279, 318, 990, 1104
SatI GCNGC 4 cut(s) 783, 786, 819, 960
Sau3AI GATC 5 cut(s) 213, 396, 763, 870, 910
SchI GAGTC 3 cut(s) 248, 320, 763
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 4 cut(s) 337, 586, 641, 1031
SfcI CTRYAG 2 cut(s) 810, 975
SgrAI CRCCGGYG 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 1021
Sse9I AATT 3 cut(s) 41, 453, 683
SspMI CTAG 3 cut(s) 449, 746, 1022
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 2 cut(s) 27, 437
TaaI ACNGT 3 cut(s) 605, 650, 761
TaiI ACGT 1 cut(s) 900
TaqI TCGA 2 cut(s) 468, 1002
TasI AATT 3 cut(s) 41, 453, 683
TfiI GAWTC 4 cut(s) 204, 339, 971, 1067
Tru1I TTAA 6 cut(s) 186, 198, 279, 318, 990, 1104
Tru9I TTAA 6 cut(s) 186, 198, 279, 318, 990, 1104
TscAI CASTG 4 cut(s) 43, 154, 292, 909
TseFI GTSAC 3 cut(s) 169, 731, 755
TseI GCWGC 4 cut(s) 782, 785, 818, 959
Tsp45I GTSAC 3 cut(s) 169, 731, 755
TspDTI ATGAA 3 cut(s) 627, 1059, 1143
TspGWI ACGGA 2 cut(s) 869, 1018
TspRI CASTG 4 cut(s) 43, 154, 292, 909
Tth111I GACNNNGTC 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 1182
Vha464I CTTAAG 1 cut(s) 185
VspI ATTAAT 2 cut(s) 198, 279
XapI RAATTY 2 cut(s) 41, 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 997
XspI CTAG 3 cut(s) 449, 746, 1022
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.