Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012746

Physical Location & Seq

Genomic Coordinates Forward (+)

4520559 .. 4522644

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTTGTGGCAAACGTTTTTTTCCTCTCTTCTCTTACTATCTCTGCTTTTCGGATGTAACGGAGATGAATCTTTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGATCCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGACATCTACAATGACCTGTGGTATGTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCTCAAGTCTTCAGATAAGACCAGAGTTATTTGAGCTCAAGCATTTAAGATCTCTCTCCTTCTTCAACTGCTTTATCTCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTTTGCATCTAACTTAGAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCCTGAAACAATTGGAAATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAGTGGAGAGCTACCCGCGAGTATCTGCAACTTAAAGAGACTAAAGAGGCTGGTTTTCGCAGGGAACTCGTTTGCGGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCGCAACTCTTTCTCAGGGACATTGCCTACATCTTTTGGAGATTTGGTTTCATTGCTCAAGCTTGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAACTAGGATTTTTGAAGAATTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGAAAATATCCAATCTCTAACGGAATTAGTTTTATCTAACAATCCAATGGGTGAAGAGGATATGGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGTAGTTTTGGACTTATCCAAAATGGGTTTGAGAGGTGAGATTCCTACAAGTCTAACCAACCTGAAGAGGTTAAGGTTTCTTGGTCTGAACAACAACAATCTAACCGGTTTTGTTCCATCGAAGAAGCTTGAAGCTTTGCCTTGCCTTGGTGCTTTATACATCAATGGAAACAACCTAACAGGTGAGCTTAGATTCTCTACAAAGTTCTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAAGAATCCAAATCTGTGTCAACCTTTAGAGATGGTAATGTCAGAATCTCATAAACATTTAAGTCCTCTTGGAGTGAAGCCATGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0036094 GO:0042221 GO:0042277 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

424

Amino Acids

47.09

Weight (kDa)

5.52

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	105 - 222	9.4e-09	Leucine-rich repeat region
LRR_8	PF13855	192 - 251	1.3e-09	Leucine rich repeat
LRR_14	PF23598	219 - 360	8.9e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13230 AT3G25670
fragaria_vesca	FvH4_4g28250
malus_domestica	MD13G1048600.v1.1 MD16G1049900.v1.1
prunus_persica	Prupe.1G303600_v2.0.a1
pyrus_communis	pycom13g04290 pycom16g04360
rosa_chinensis	RchiOBHm_Chr4g0436111
rosa_laevigata	RLG00000006538
rosa_multiflora	Rmu_sc0006301.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377220
rosa_rugosa	Rorug04G0292100
rosa_samantha	Rh4AG346100 Rh4BG355200 Rh4CG369800 Rh4DG348800
rosa_wichuraiana	Rw4G030250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	554
AciI	CCGC	3 cut(s)	552, 611, 670
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	4 cut(s)	181, 185, 444, 613
AcsI	RAATTY	1 cut(s)	790
AcuI	CTGAAG	5 cut(s)	99, 114, 296, 527, 1028
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	215, 1091
AgeI	ACCGGT	1 cut(s)	1049
AgsI	TTSAA	7 cut(s)	146, 367, 634, 787, 851, 1076, 1185
Alw21I	GWGCWC	2 cut(s)	339, 651
Alw26I	GTCTC	2 cut(s)	467, 568
AlwI	GGATC	4 cut(s)	181, 185, 444, 613
Ama87I	CYCGRG	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	790
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AsiGI	ACCGGT	1 cut(s)	1049
AspS9I	GGNCC	1 cut(s)	805
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	5 cut(s)	170, 400, 911, 992, 1139
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	805
AxyI	CCTNAGG	1 cut(s)	809
BanII	GRGCYC	2 cut(s)	339, 651
BarI	GAAGNNNNNNTAC	2 cut(s)	747, 779
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	339, 651
BccI	CCATC	3 cut(s)	1069, 1156, 1210
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	467, 568
BfaI	CTAG	1 cut(s)	776
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	805
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	4 cut(s)	289, 323, 710, 753
BpuMI	CCSGG	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	384, 1090
BsaWI	WCCGGW	1 cut(s)	1049
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 1091
Bse118I	RCCGGY	1 cut(s)	1049
Bse21I	CCTNAGG	1 cut(s)	809
Bse3DI	GCAATG	2 cut(s)	689, 719
BseDI	CCNNGG	2 cut(s)	384, 1090
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	215, 1091
BseMI	GCAATG	2 cut(s)	689, 719
BseMII	CTCAG	2 cut(s)	696, 800
BseRI	GAGGAG	2 cut(s)	292, 416
Bsh1236I	CGCG	1 cut(s)	554
BshTI	ACCGGT	1 cut(s)	1049
BsiHKAI	GWGCWC	2 cut(s)	339, 651
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	459, 1050
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	2 cut(s)	215, 1091
BsmAI	GTCTC	2 cut(s)	467, 568
BsmFI	GGGAC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	339, 651
Bsp143I	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	3 cut(s)	552, 611, 670
BspCNI	CTCAG	2 cut(s)	695, 801
BspFNI	CGCG	1 cut(s)	554
BspPI	GGATC	4 cut(s)	181, 185, 444, 613
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	689, 719
BsrFI	RCCGGY	1 cut(s)	1049
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	2 cut(s)	384, 1090
BssMI	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
BssT1I	CCWWGG	2 cut(s)	384, 1090
Bst4CI	ACNGT	1 cut(s)	629
Bst6I	CTCTTC	3 cut(s)	33, 897, 1004
BstDEI	CTNAG	6 cut(s)	430, 682, 737, 751, 809, 1133
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	6 cut(s)	176, 193, 353, 452, 621, 657
BstMAI	GTCTC	2 cut(s)	467, 568
BstMBI	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
BstSCI	CCNGG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	3 cut(s)	173, 350, 449
BstYI	RGATCY	3 cut(s)	173, 350, 449
Bsu36I	CCTNAGG	1 cut(s)	809
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	1 cut(s)	805
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	1049
CviAII	CATG	2 cut(s)	385, 1266
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	6 cut(s)	430, 682, 737, 751, 809, 1133
DpnI	GATC	6 cut(s)	175, 192, 352, 451, 620, 656
DpnII	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
DraI	TTTAAA	1 cut(s)	1177
Eam1104I	CTCTTC	3 cut(s)	33, 897, 1004
EarI	CTCTTC	3 cut(s)	33, 897, 1004
Ecl136II	GAGCTC	2 cut(s)	337, 649
Eco130I	CCWWGG	2 cut(s)	384, 1090
Eco24I	GRGCYC	2 cut(s)	339, 651
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	805
Eco53kI	GAGCTC	2 cut(s)	337, 649
Eco57I	CTGAAG	5 cut(s)	99, 114, 296, 527, 1028
Eco81I	CCTNAGG	1 cut(s)	809
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	2 cut(s)	337, 649
EcoT14I	CCWWGG	2 cut(s)	384, 1090
EcoT38I	GRGCYC	2 cut(s)	339, 651
ErhI	CCWWGG	2 cut(s)	384, 1090
FaeI	CATG	2 cut(s)	388, 1269
FaiI	YATR	8 cut(s)	252, 282, 386, 911, 1102, 1155, 1236, 1267
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	2 cut(s)	384, 1265
FauI	CCCGC	2 cut(s)	559, 604
Fnu4HI	GCNGC	1 cut(s)	670
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	2 cut(s)	339, 651
Fsp4HI	GCNGC	1 cut(s)	670
FspBI	CTAG	1 cut(s)	776
GluI	GCNGC	1 cut(s)	670
HapII	CCGG	2 cut(s)	459, 1050
Hin1II	CATG	2 cut(s)	388, 1269
HincII	GTYRAC	1 cut(s)	1205
HindII	GTYRAC	1 cut(s)	1205
HindIII	AAGCTT	4 cut(s)	728, 1070, 1077, 1179
HpaII	CCGG	2 cut(s)	459, 1050
HphI	GGTGA	5 cut(s)	170, 400, 911, 992, 1139
Hpy166II	GTNNAC	2 cut(s)	411, 1205
Hpy188I	TCNGA	5 cut(s)	53, 94, 315, 1032, 1228
Hpy188III	TCNNGA	6 cut(s)	188, 440, 479, 524, 652, 770
Hpy8I	GTNNAC	2 cut(s)	411, 1205
HpyAV	CCTTC	2 cut(s)	370, 749
HpyCH4III	ACNGT	1 cut(s)	629
HpyCH4IV	ACGT	2 cut(s)	14, 121
HpyCH4V	TGCA	3 cut(s)	422, 564, 1269
HpyF3I	CTNAG	6 cut(s)	430, 682, 737, 751, 809, 1133
HpySE526I	ACGT	2 cut(s)	14, 121
Hsp92II	CATG	2 cut(s)	388, 1269
Kzo9I	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
LmnI	GCTCC	2 cut(s)	106, 305
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	2 cut(s)	14, 121
MaeIII	GTNAC	4 cut(s)	56, 82, 227, 253
MalI	GATC	6 cut(s)	175, 192, 352, 451, 620, 656
MboI	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	3 cut(s)	173, 350, 449
MhlI	GDGCHC	2 cut(s)	339, 651
MluCI	AATT	6 cut(s)	210, 486, 790, 872, 922, 940
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	182
MseI	TTAA	7 cut(s)	347, 569, 641, 1016, 1176, 1244, 1273
MspI	CCGG	2 cut(s)	459, 1050
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	554
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
NlaIII	CATG	2 cut(s)	388, 1269
NmuCI	GTSAC	2 cut(s)	227, 253
PaeR7I	CTCGAG	1 cut(s)	440
PinAI	ACCGGT	1 cut(s)	1049
PkrI	GCNGC	1 cut(s)	671
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	2 cut(s)	339, 651
Psp1406I	AACGTT	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	805
PsuI	RGATCY	3 cut(s)	173, 350, 449
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	2 cut(s)	339, 651
SaqAI	TTAA	7 cut(s)	347, 569, 641, 1016, 1176, 1244, 1273
SatI	GCNGC	1 cut(s)	670
Sau3AI	GATC	6 cut(s)	173, 190, 350, 449, 618, 654
Sau96I	GGNCC	1 cut(s)	805
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	2 cut(s)	339, 651
SfaNI	GCATC	1 cut(s)	431
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	805
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	5 cut(s)	304, 338, 440, 725, 768
SmoI	CTYRAG	5 cut(s)	304, 338, 440, 725, 768
Sse9I	AATT	6 cut(s)	210, 486, 790, 872, 922, 940
SsiI	CCGC	3 cut(s)	552, 611, 670
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	1 cut(s)	776
SstI	GAGCTC	2 cut(s)	339, 651
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	384, 1090
TaaI	ACNGT	1 cut(s)	629
TaiI	ACGT	2 cut(s)	17, 124
TaqI	TCGA	3 cut(s)	441, 525, 1064
TasI	AATT	6 cut(s)	210, 486, 790, 872, 922, 940
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	672
Tru1I	TTAA	7 cut(s)	347, 569, 641, 1016, 1176, 1244, 1273
Tru9I	TTAA	7 cut(s)	347, 569, 641, 1016, 1176, 1244, 1273
TseFI	GTSAC	2 cut(s)	227, 253
Tsp45I	GTSAC	2 cut(s)	227, 253
TspDTI	ATGAA	3 cut(s)	81, 297, 708
TspGWI	ACGGA	4 cut(s)	75, 186, 272, 884
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	1 cut(s)	790
XhoI	CTCGAG	1 cut(s)	440
XspI	CTAG	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.