Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012746

Physical Location & Seq

Genomic Coordinates Forward (+)

57750674 .. 57752618

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGAAAAGCTACACTTCCTTCAATGCTCTCATTTTCGCTTTCTTCATCCTTTTCTCGGCTGCTTCGTCCTCTGAAGAAGCAATAGAACAAGTTTTAGCTCCAATGGAGAAAACAGAGCAAGAAGCTCTCTACTCTGCTATTCAAGGCTTTGTGGGTAAATGGTGGAATGGTTCAGACCTCTATCCGGATCCTTGTGGATGGACTCCTATTCAGGGGGTGTCTTGTGATCTCTTCAATGGGCTTTGGTATGTGACAGTAATGAACATTGGACCTGTTCATGACAACTCTCTTGATTGTTCCCCAAATGCAAAATTCAGACCCCAACTGTTTGATTTGAAGCACCTAAAATCCTTGTCCTTTTCCAATTGTTTCATCTCACCACACAAACATCCAGTTCAAATCCCCACTGAGAATTGGTGGAAGCTCTCTGAGAGCTTAGAATCATTGGAGTTTCGATCGAATCCCGGTCTTACTGGGCAAATTCCCAGTAGCTTTGGTGGCCTCAGAAAGCTCCAATCTTTGGTGCTAGTAGAGTGTGGGTTAAATGGTGGGTTACCAAGTAACATTGGTGACTTGGTGCAGTTAAAGAGGCTAGTTCTCTTTGGAAACTGGTTTACAGGTCCAATTCCTGATAGTTTTGGTGAATTAAATCAGCTCTTAATCTTTGATTTGAGCCAAAACTCATTATCTGGGCCTCTGCCAGGCACTCTTGGAAGCTTGACTTCATTGTTGAAGCTTGATTTGAGCAACAACTTATTGGGAGGGTCAATTTCTCAAGTGGGTGATCTGAAAAACCTGACCCTTTTGGACCTGAGGAACAACAACTTCTCAGGTGGGTTGACCAAGTCAATTCAAGAGATGCATTCCTTGGAAGAGATGGCCCTGTCCAACAACCCAATTGGTGGAGACCTCAATACCATAGAATGGCAAAACACGGATAAATTGGTCATTTTGGATCTCTCTAAAACAGGGTTAACAGGGGAGATTCCAGAGTCCATATCAGAGTTAAAGAGGTTGAGGTTTTTGGGTCTAAATGACAACAAGCTCATAGGTAACCTCTCGCCAAAGCTTGCAACTTTGCCTTGCGTTAGTGCACTTTACCTACATGGGAACAACCTGACAGGGGAGCTTAAATTCTCCGAGTCGTTTTACGCCAAAATGGGGAGTCGTTTTGGTGCTTGGAACAACCCTAATCTCTGCTACCTTGATGCATTGGTCACAAAGAGCAATGTACCATTTGGGGTCAAGCCATGCCGGGCTGAGGTCACATTGCTCGAATCGAATTCAAAAACAAGGCTGGAAGAGGGGAGGTTAAATCAAAATTCCTTCTTCACTGCTTCTTTGGGATTCTCAAGTCGTGGTGGCATAATTGATGGGTTTTGGTGGCTTGGTGGGTTGTTGCAATTAATAATAGTGCTGCTGTTGAACTGGTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0016020 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

479

Amino Acids

52.72

Weight (kDa)

5.4

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	168 - 378	4.1e-12	Leucine-rich repeat region
LRR_8	PF13855	194 - 253	7.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13230 AT3G25670
fragaria_vesca	FvH4_4g28250
malus_domestica	MD13G1048600.v1.1 MD16G1049900.v1.1
prunus_persica	Prupe.1G303600_v2.0.a1
pyrus_communis	pycom13g04290 pycom16g04360
rosa_chinensis	RchiOBHm_Chr4g0436111
rosa_laevigata	RLG00000006538
rosa_multiflora	Rmu_sc0006301.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377220
rosa_rugosa	Rorug04G0292100
rosa_samantha	Rh4AG346100 Rh4BG355200 Rh4CG369800 Rh4DG348800
rosa_wichuraiana	Rw4G030250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	520, 902, 924
AccIII	TCCGGA	1 cut(s)	184
AclWI	GGATC	3 cut(s)	182, 195, 963
AcsI	RAATTY	5 cut(s)	311, 480, 1133, 1282, 1321
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	1233
AgsI	TTSAA	9 cut(s)	22, 143, 235, 337, 398, 733, 854, 1287, 1426
AjnI	CCWGG	1 cut(s)	700
Alw21I	GWGCWC	1 cut(s)	1096
Alw26I	GTCTC	1 cut(s)	900
Alw44I	GTGCAC	1 cut(s)	1092
AlwI	GGATC	3 cut(s)	182, 195, 963
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	3 cut(s)	499, 692, 879
ApaLI	GTGCAC	1 cut(s)	1092
ApeKI	GCWGC	2 cut(s)	59, 1417
ApoI	RAATTY	5 cut(s)	311, 480, 1133, 1282, 1321
AseI	ATTAAT	1 cut(s)	1406
Asp700I	GAANNNNTTC	1 cut(s)	1430
AspS9I	GGNCC	5 cut(s)	269, 620, 692, 808, 880
AsuC2I	CCSGG	2 cut(s)	465, 1256
AsuHPI	GGTGA	4 cut(s)	369, 581, 653, 794
AvaII	GGWCC	3 cut(s)	269, 620, 808
AxyI	CCTNAGG	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	1096
BamHI	GGATCC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	1096
BbvCI	CCTCAGC	1 cut(s)	1260
BbvI	GCAGC	2 cut(s)	46, 1404
BccI	CCATC	3 cut(s)	192, 871, 1367
BciT130I	CCWGG	1 cut(s)	702
BcnI	CCSGG	2 cut(s)	465, 1256
BcoDI	GTCTC	1 cut(s)	900
BfaI	CTAG	2 cut(s)	527, 593
BisI	GCNGC	2 cut(s)	60, 1418
BlsI	GCNGC	2 cut(s)	61, 1419
Bme1390I	CCNGG	3 cut(s)	465, 702, 1256
Bme18I	GGWCC	3 cut(s)	269, 620, 808
BmgT120I	GGNCC	5 cut(s)	269, 620, 692, 808, 880
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	3 cut(s)	465, 702, 1256
BmrI	ACTGGG	2 cut(s)	480, 483
BmsI	GCATC	2 cut(s)	849, 1198
BmuI	ACTGGG	2 cut(s)	480, 483
Bpu10I	CCTNAGC	1 cut(s)	1260
BpuEI	CTTGAG	2 cut(s)	759, 1336
BpuMI	CCSGG	2 cut(s)	465, 1256
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	1 cut(s)	867
BsaWI	WCCGGW	1 cut(s)	184
Bse1I	ACTGG	5 cut(s)	392, 478, 486, 614, 1433
Bse21I	CCTNAGG	1 cut(s)	812
Bse3DI	GCAATG	2 cut(s)	1234, 1268
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	3 cut(s)	45, 203, 388
BseMI	GCAATG	2 cut(s)	1234, 1268
BseMII	CTCAG	6 cut(s)	399, 420, 517, 803, 843, 1251
BseNI	ACTGG	5 cut(s)	392, 478, 486, 614, 1433
BseSI	GKGCMC	1 cut(s)	1096
BseXI	GCAGC	2 cut(s)	46, 1404
BsgI	GTGCAG	1 cut(s)	599
Bsh1285I	CGRYCG	1 cut(s)	458
BshFI	GGCC	3 cut(s)	501, 694, 881
BsiEI	CGRYCG	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	1096
BsiSI	CCGG	3 cut(s)	185, 465, 1255
BsmAI	GTCTC	1 cut(s)	900
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	3 cut(s)	501, 694, 881
Bso31I	GGTCTC	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	1096
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	187, 226, 455, 784, 955
BspANI	GGCC	3 cut(s)	501, 694, 881
BspCNI	CTCAG	6 cut(s)	400, 421, 516, 804, 842, 1252
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	3 cut(s)	182, 195, 963
BspTNI	GGTCTC	1 cut(s)	900
BsrDI	GCAATG	2 cut(s)	1234, 1268
BsrI	ACTGG	5 cut(s)	392, 478, 486, 614, 1433
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	5 cut(s)	187, 226, 455, 784, 955
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	256, 327
Bst6I	CTCTTC	3 cut(s)	236, 867, 1296
BstC8I	GCNNGC	1 cut(s)	1071
BstDEI	CTNAG	7 cut(s)	408, 429, 436, 503, 812, 829, 1260
BstEII	GGTNACC	2 cut(s)	552, 1052
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	3 cut(s)	45, 203, 388
BstKTI	GATC	5 cut(s)	190, 229, 458, 787, 958
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	5 cut(s)	187, 226, 455, 784, 955
BstMCI	CGRYCG	1 cut(s)	458
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	702
BstPI	GGTNACC	2 cut(s)	552, 1052
BstSCI	CCNGG	3 cut(s)	463, 700, 1254
BstSLI	GKGCMC	1 cut(s)	1096
BstV1I	GCAGC	2 cut(s)	46, 1404
BstX2I	RGATCY	2 cut(s)	187, 955
BstYI	RGATCY	2 cut(s)	187, 955
Bsu36I	CCTNAGG	1 cut(s)	812
BsuRI	GGCC	3 cut(s)	501, 694, 881
BtsCI	GGATG	3 cut(s)	45, 203, 388
BtsI	GCAGTG	1 cut(s)	1332
BtsIMutI	CAGTG	2 cut(s)	405, 1332
Cac8I	GCNNGC	1 cut(s)	1071
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	5 cut(s)	269, 620, 692, 808, 880
Csp6I	GTAC	1 cut(s)	1232
CviAII	CATG	3 cut(s)	278, 1106, 1251
CviQI	GTAC	1 cut(s)	1232
DdeI	CTNAG	7 cut(s)	408, 429, 436, 503, 812, 829, 1260
DpnI	GATC	5 cut(s)	189, 228, 457, 786, 957
DpnII	GATC	5 cut(s)	187, 226, 455, 784, 955
Eam1104I	CTCTTC	3 cut(s)	236, 867, 1296
EarI	CTCTTC	3 cut(s)	236, 867, 1296
Eco130I	CCWWGG	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	900
Eco47I	GGWCC	3 cut(s)	269, 620, 808
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	812
Eco91I	GGTNACC	2 cut(s)	552, 1052
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoO65I	GGTNACC	2 cut(s)	552, 1052
EcoRI	GAATTC	1 cut(s)	1282
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	867
EcoT22I	ATGCAT	2 cut(s)	864, 1213
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	3 cut(s)	281, 1109, 1254
FaiI	YATR	8 cut(s)	249, 279, 920, 998, 1049, 1107, 1252, 1367
FalI	AAGNNNNNCTT	3 cut(s)	30, 706, 738
FatI	CATG	3 cut(s)	277, 1105, 1250
Fnu4HI	GCNGC	2 cut(s)	60, 1418
FokI	GGATG	3 cut(s)	32, 210, 375
Fsp4HI	GCNGC	2 cut(s)	60, 1418
FspBI	CTAG	2 cut(s)	527, 593
GluI	GCNGC	2 cut(s)	60, 1418
HaeIII	GGCC	3 cut(s)	501, 694, 881
HapII	CCGG	3 cut(s)	185, 465, 1255
Hin1II	CATG	3 cut(s)	281, 1109, 1254
HincII	GTYRAC	2 cut(s)	840, 975
HindII	GTYRAC	2 cut(s)	840, 975
HindIII	AAGCTT	3 cut(s)	715, 734, 1067
HinfI	GANTC	9 cut(s)	202, 440, 460, 985, 992, 1142, 1165, 1277, 1347
HpaI	GTTAAC	1 cut(s)	975
HpaII	CCGG	3 cut(s)	185, 465, 1255
HphI	GGTGA	4 cut(s)	369, 581, 653, 794
Hpy166II	GTNNAC	4 cut(s)	615, 840, 975, 1094
Hpy188I	TCNGA	8 cut(s)	73, 175, 317, 430, 506, 789, 1003, 1141
Hpy188III	TCNNGA	6 cut(s)	185, 278, 290, 629, 854, 989
Hpy8I	GTNNAC	4 cut(s)	615, 840, 975, 1094
HpyAV	CCTTC	2 cut(s)	28, 1336
HpyCH4III	ACNGT	2 cut(s)	256, 327
HpyCH4V	TGCA	7 cut(s)	308, 580, 862, 1073, 1094, 1211, 1402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	7 cut(s)	408, 429, 436, 503, 812, 829, 1260
Hsp92II	CATG	3 cut(s)	281, 1109, 1254
Kpn2I	TCCGGA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	975
Kzo9I	GATC	5 cut(s)	187, 226, 455, 784, 955
LmnI	GCTCC	3 cut(s)	103, 516, 1126
Lsp1109I	GCAGC	2 cut(s)	46, 1404
LweI	GCATC	2 cut(s)	849, 1198
MaeI	CTAG	2 cut(s)	527, 593
MaeIII	GTNAC	7 cut(s)	250, 552, 560, 569, 1052, 1216, 1264
MalI	GATC	5 cut(s)	189, 228, 457, 786, 957
MboI	GATC	5 cut(s)	187, 226, 455, 784, 955
MboII	GAAGA	6 cut(s)	34, 86, 223, 884, 1313, 1321
MfeI	CAATTG	2 cut(s)	364, 897
MflI	RGATCY	2 cut(s)	187, 955
MhlI	GDGCHC	1 cut(s)	1096
MlyI	GAGTC	4 cut(s)	196, 1001, 1151, 1174
MmeI	TCCRAC	1 cut(s)	912
Mph1103I	ATGCAT	2 cut(s)	864, 1213
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	1430
MseI	TTAA	9 cut(s)	542, 584, 647, 659, 974, 1007, 1131, 1313, 1406
MspI	CCGG	3 cut(s)	185, 465, 1255
MspR9I	CCNGG	3 cut(s)	465, 702, 1256
MunI	CAATTG	2 cut(s)	364, 897
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	1 cut(s)	498
NciI	CCSGG	2 cut(s)	465, 1256
NdeII	GATC	5 cut(s)	187, 226, 455, 784, 955
NlaIII	CATG	3 cut(s)	281, 1109, 1254
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	4 cut(s)	250, 569, 1216, 1264
NsiI	ATGCAT	2 cut(s)	864, 1213
PagI	TCATGA	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	1430
PfeI	GAWTC	5 cut(s)	440, 460, 985, 1277, 1347
PflFI	GACNNNGTC	1 cut(s)	844
PflMI	CCANNNNNTGG	3 cut(s)	520, 902, 924
PkrI	GCNGC	2 cut(s)	61, 1419
Ple19I	CGATCG	1 cut(s)	458
PleI	GAGTC	4 cut(s)	196, 1000, 1150, 1173
PpsI	GAGTC	4 cut(s)	196, 1000, 1150, 1173
PshBI	ATTAAT	1 cut(s)	1406
Psp6I	CCWGG	1 cut(s)	700
PspEI	GGTNACC	2 cut(s)	552, 1052
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	5 cut(s)	269, 620, 692, 808, 880
PsuI	RGATCY	2 cut(s)	187, 955
PsyI	GACNNNGTC	1 cut(s)	844
PvuI	CGATCG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	1233
RsaNI	GTAC	1 cut(s)	1232
SaqAI	TTAA	9 cut(s)	542, 584, 647, 659, 974, 1007, 1131, 1313, 1406
SatI	GCNGC	2 cut(s)	60, 1418
Sau3AI	GATC	5 cut(s)	187, 226, 455, 784, 955
Sau96I	GGNCC	5 cut(s)	269, 620, 692, 808, 880
SchI	GAGTC	4 cut(s)	196, 1001, 1151, 1174
ScrFI	CCNGG	3 cut(s)	465, 702, 1256
SduI	GDGCHC	1 cut(s)	1096
SfaNI	GCATC	2 cut(s)	849, 1198
SinI	GGWCC	3 cut(s)	269, 620, 808
SmlI	CTYRAG	2 cut(s)	774, 1351
SmoI	CTYRAG	2 cut(s)	774, 1351
SspMI	CTAG	2 cut(s)	527, 593
StyD4I	CCNGG	3 cut(s)	463, 700, 1254
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	2 cut(s)	256, 327
TaqI	TCGA	4 cut(s)	454, 458, 1275, 1280
TfiI	GAWTC	5 cut(s)	440, 460, 985, 1277, 1347
Tru1I	TTAA	9 cut(s)	542, 584, 647, 659, 974, 1007, 1131, 1313, 1406
Tru9I	TTAA	9 cut(s)	542, 584, 647, 659, 974, 1007, 1131, 1313, 1406
TscAI	CASTG	2 cut(s)	412, 1339
TseFI	GTSAC	4 cut(s)	250, 569, 1216, 1264
TseI	GCWGC	2 cut(s)	59, 1417
Tsp45I	GTSAC	4 cut(s)	250, 569, 1216, 1264
TspDTI	ATGAA	7 cut(s)	17, 34, 266, 275, 361, 714, 1423
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	2 cut(s)	412, 1339
Tth111I	GACNNNGTC	1 cut(s)	844
Van91I	CCANNNNNTGG	3 cut(s)	520, 902, 924
VneI	GTGCAC	1 cut(s)	1092
VpaK11BI	GGWCC	3 cut(s)	269, 620, 808
VspI	ATTAAT	1 cut(s)	1406
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	5 cut(s)	311, 480, 1133, 1282, 1321
XmnI	GAANNNNTTC	1 cut(s)	1430
XspI	CTAG	2 cut(s)	527, 593
Zsp2I	ATGCAT	2 cut(s)	864, 1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.