Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012746

Physical Location & Seq

Genomic Coordinates Reverse (-)

9344313 .. 9346424

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGTCTTGGATTCATTTGGTTTTATTCCTTTGTCTAACTCTCCTGTGTTGCGTTACTGGAGAATTATCACCGGAAGGCACTGATGATGGAGCTCCGATGGAGAAAACAGAACAAGAAGCTCTTTACTCAGCTATTCAAGGGTTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTATCCTGATCCTTGTGGTTGGACTCCTATTCAGGGTGTTTCTTGTGATCTTTATGGTGACTTGTGGTATGTCACGGATCTAACCCTAGGTCTTGTTCATGAAAACTCACTTTCTTGCGCCACAAGTTTGGAGATAAAGCCACAGTTATTCAAGCTCAAGCACTTGAAATCACTCACGTTCTTCAACTGCTTCACGTCGCCGATAAGAATACCTAAAGAGGATTGGATAAACTTGGCAAGTAACTTAGAATCACTCGAGTTTAGATCCAATCCTGGTTTGATTGGTGAACTTCCTGAAACAATTGGAAGTCTCACAAAGCTGAAGTCTTTGGTGGTTCTTGAAAACGGGTTTAACGGGAAGTTACCGACGAGAATCTGCAATTTAACTAGGTTAAAGCGGTTGGTTCTGGCGGGAAACTTGTTCACTGGGACGATTCCGGATTGTTTCAACGGGTTTAAGGATCTACTGATCTTGGATATGAGTCGGAACTCATTCTCAGGGATATTGCCTTTGTCTGTTGGAGAGATGGTTTCATTGCTTAAGCTTGACCTAAGCAATAACCAATTAGAAGGGAGGTTGCCTCAAGAAATCGGGTTTTTGAAGAATCTGACACTTTTGGATCTAAGGAACAACAGAATCTCTGGAGGGTTGTTCGAAAACATCGAAAAGATTCCATCTCTAACGGATCTTGTTTTATCAGGGAACCCAATGGGCAGTGATGACATGATGGGAATAAAGTGGGAGAATATGGGCAATTTGGTCATTTTGGATCTGTCAAAGATGGGTTTAAGAGGTGAGGTTCCTTTAGGTTTAACAAGTTTGAGAAGATTGAGGTTTCTTGGTCTCAACGACAACAACTTGACCGGCACTGTCCCATCAAAAGAGCTCGAGACATTGCCTTGTCTTGGTGCTCTATACATCAATGGAAACAATCTATCAGGAGAGCTAAGATTCTCAAGAAAGTTCTATGAGAAGATGGGAACAAGGTTTAAGGCTTCAAAGAATCCAAATCTTTGTCAGGATGTTGTGTCAGAATCTCGGCAATATGTTGTTGGATTGAAGTCTTGCATGATGGAGAAGGCAGAGGATAGTTTGGTAATTAAACAAACTTGGAGCAACCTTAAGAAGGAGGATGAGTCAAGTTCATCAATGGGTGTGATGGTTACTAGACATGTGTTGTTGTCAAATGGGTTCATGTGGGATTTGCTTTTGGAGCTTTCTCTTATATTATTATTGAATTTGTTAGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0036094 GO:0042221 GO:0042277 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

475

Amino Acids

52.73

Weight (kDa)

5.24

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	105 - 196	9.6e-06	Leucine-rich repeat region
LRR_8	PF13855	188 - 247	3.7e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13230 AT3G25670
fragaria_vesca	FvH4_4g28250
malus_domestica	MD13G1048600.v1.1 MD16G1049900.v1.1
prunus_persica	Prupe.1G303600_v2.0.a1
pyrus_communis	pycom13g04290 pycom16g04360
rosa_chinensis	RchiOBHm_Chr4g0436111
rosa_laevigata	RLG00000006538
rosa_multiflora	Rmu_sc0006301.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377220
rosa_rugosa	Rorug04G0292100
rosa_samantha	Rh4AG346100 Rh4BG355200 Rh4CG369800 Rh4DG348800
rosa_wichuraiana	Rw4G030250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	2 cut(s)	571, 584
AclWI	GGATC	7 cut(s)	176, 258, 432, 642, 801, 867, 951
AcsI	RAATTY	1 cut(s)	1411
AcuI	CTGAAG	1 cut(s)	515
AfiI	CCNNNNNNNGG	3 cut(s)	206, 1079, 1300
AflII	CTTAAG	2 cut(s)	713, 1295
AflIII	ACRYGT	1 cut(s)	1345
AjiI	CACGTC	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	9 cut(s)	92, 119, 131, 328, 493, 718, 1060, 1120, 1390
AluI	AGCT	9 cut(s)	92, 119, 131, 328, 493, 718, 1060, 1120, 1390
Alw21I	GWGCWC	3 cut(s)	94, 1062, 1087
Alw26I	GTCTC	3 cut(s)	488, 1022, 1058
AlwI	GGATC	7 cut(s)	176, 258, 432, 642, 801, 867, 951
Ama87I	CYCGRG	2 cut(s)	428, 1061
Aor13HI	TCCGGA	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	1411
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp700I	GAANNNNTTC	2 cut(s)	665, 843
AspA2I	CCTAGG	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	293
AsuHPI	GGTGA	5 cut(s)	60, 161, 242, 470, 980
AsuII	TTCGAA	1 cut(s)	828
AvaI	CYCGRG	2 cut(s)	428, 1061
AvrII	CCTAGG	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	94, 1062
Bbv12I	GWGCWC	3 cut(s)	94, 1062, 1087
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	3 cut(s)	488, 1022, 1058
BfaI	CTAG	3 cut(s)	260, 561, 1341
BfrI	CTTAAG	2 cut(s)	713, 1295
BlnI	CCTAGG	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	447
BmeT110I	CYCGRG	2 cut(s)	428, 1061
BmgBI	CACGTC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	878, 975
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	609
BmuI	ACTGGG	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpmI	CTGGAG	2 cut(s)	78, 837
Bpu10I	CCTNAGC	1 cut(s)	725
Bpu14I	TTCGAA	1 cut(s)	828
BpuEI	CTTGAG	3 cut(s)	314, 741, 1114
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	1022
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	70, 610
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 717, 1295, 1325
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 1079, 1300
Bse118I	RCCGGY	1 cut(s)	1037
Bse1I	ACTGG	2 cut(s)	61, 604
Bse3DI	GCAATG	2 cut(s)	707, 1067
Bse8I	GATNNNNATC	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	1201, 1312
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	206, 1079, 1300
BseMI	GCAATG	2 cut(s)	707, 1067
BseMII	CTCAG	2 cut(s)	141, 684
BseNI	ACTGG	2 cut(s)	61, 604
BsiHKAI	GWGCWC	3 cut(s)	94, 1062, 1087
BsiHKCI	CYCGRG	2 cut(s)	428, 1061
BsiSI	CCGG	3 cut(s)	71, 611, 1038
BslFI	GGGAC	2 cut(s)	616, 1031
BslI	CCNNNNNNNGG	3 cut(s)	206, 1079, 1300
BsmAI	GTCTC	3 cut(s)	488, 1022, 1058
BsmFI	GGGAC	2 cut(s)	616, 1031
Bso31I	GGTCTC	1 cut(s)	1022
BsoBI	CYCGRG	2 cut(s)	428, 1061
Bsp119I	TTCGAA	1 cut(s)	828
Bsp1286I	GDGCHC	3 cut(s)	94, 1062, 1087
Bsp13I	TCCGGA	1 cut(s)	610
BspACI	CCGC	2 cut(s)	571, 584
BspCNI	CTCAG	2 cut(s)	140, 683
BspEI	TCCGGA	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	878, 975
BspPI	GGATC	7 cut(s)	176, 258, 432, 642, 801, 867, 951
BspT104I	TTCGAA	1 cut(s)	828
BspTI	CTTAAG	2 cut(s)	713, 1295
BspTNI	GGTCTC	1 cut(s)	1022
BsrDI	GCAATG	2 cut(s)	707, 1067
BsrFI	RCCGGY	1 cut(s)	1037
BsrI	ACTGG	2 cut(s)	61, 604
BssAI	RCCGGY	1 cut(s)	1037
BssECI	CCNNGG	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	318, 1045
BstAFI	CTTAAG	2 cut(s)	713, 1295
BstBI	TTCGAA	1 cut(s)	828
BstDEI	CTNAG	6 cut(s)	127, 418, 670, 725, 797, 1121
BstENI	CCTNNNNNAGG	1 cut(s)	1298
BstF5I	GGATG	2 cut(s)	1201, 1312
BstHHI	GCGC	1 cut(s)	293
BstMAI	GTCTC	3 cut(s)	488, 1022, 1058
BstMWI	GCNNNNNNNGC	1 cut(s)	1387
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	1349
BstSCI	CCNGG	1 cut(s)	445
BstX2I	RGATCY	6 cut(s)	250, 437, 634, 793, 859, 943
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	6 cut(s)	250, 437, 634, 793, 859, 943
BtrI	CACGTC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	1201, 1312
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	4 cut(s)	78, 597, 895, 1041
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	1037
CviAII	CATG	5 cut(s)	272, 898, 1243, 1346, 1369
DdeI	CTNAG	6 cut(s)	127, 418, 670, 725, 797, 1121
Ecl136II	GAGCTC	2 cut(s)	92, 1060
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	94, 1062
Eco31I	GGTCTC	1 cut(s)	1022
Eco53kI	GAGCTC	2 cut(s)	92, 1060
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	2 cut(s)	428, 1061
EcoICRI	GAGCTC	2 cut(s)	92, 1060
EcoNI	CCTNNNNNAGG	1 cut(s)	1298
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	94, 1062
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	5 cut(s)	275, 901, 1246, 1349, 1372
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	616, 1031
FatI	CATG	5 cut(s)	271, 897, 1242, 1345, 1368
FauI	CCCGC	1 cut(s)	577
FokI	GGATG	2 cut(s)	1208, 1319
FriOI	GRGCYC	2 cut(s)	94, 1062
FspBI	CTAG	3 cut(s)	260, 561, 1341
GlaI	GCGC	1 cut(s)	292
GsuI	CTGGAG	2 cut(s)	78, 837
HapII	CCGG	3 cut(s)	71, 611, 1038
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	5 cut(s)	275, 901, 1246, 1349, 1372
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	716
HpaII	CCGG	3 cut(s)	71, 611, 1038
HphI	GGTGA	5 cut(s)	60, 161, 242, 470, 980
Hpy166II	GTNNAC	2 cut(s)	461, 597
Hpy188I	TCNGA	5 cut(s)	96, 169, 660, 783, 1207
Hpy8I	GTNNAC	2 cut(s)	461, 597
Hpy99I	CGWCG	2 cut(s)	373, 544
HpyAV	CCTTC	4 cut(s)	68, 737, 1246, 1294
HpyCH4III	ACNGT	2 cut(s)	318, 1045
HpyCH4IV	ACGT	2 cut(s)	350, 368
HpyCH4V	TGCA	2 cut(s)	552, 1242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1387
HpyF3I	CTNAG	6 cut(s)	127, 418, 670, 725, 797, 1121
HpySE526I	ACGT	2 cut(s)	350, 368
Hsp92II	CATG	5 cut(s)	275, 901, 1246, 1349, 1372
HspAI	GCGC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	610
LmnI	GCTCC	4 cut(s)	89, 97, 1287, 1387
MaeI	CTAG	3 cut(s)	260, 561, 1341
MaeII	ACGT	2 cut(s)	350, 368
MaeIII	GTNAC	6 cut(s)	52, 230, 244, 413, 534, 1336
MboII	GAAGA	4 cut(s)	346, 787, 1011, 1159
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	6 cut(s)	250, 437, 634, 793, 859, 943
MhlI	GDGCHC	3 cut(s)	94, 1062, 1087
MluCI	AATT	7 cut(s)	62, 474, 553, 737, 928, 1272, 1411
MlyI	GAGTC	3 cut(s)	190, 664, 1319
MmeI	TCCRAC	4 cut(s)	173, 638, 673, 1207
MnlI	CCTC	9 cut(s)	385, 741, 765, 812, 959, 964, 999, 1252, 1297
MroI	TCCGGA	1 cut(s)	610
MroXI	GAANNNNTTC	2 cut(s)	665, 843
MspCI	CTTAAG	2 cut(s)	713, 1295
MspI	CCGG	3 cut(s)	71, 611, 1038
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	1387
NlaIII	CATG	5 cut(s)	275, 901, 1246, 1349, 1372
NlaIV	GGNNCC	2 cut(s)	878, 975
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	2 cut(s)	230, 244
NspI	RCATGY	1 cut(s)	1349
NspV	TTCGAA	1 cut(s)	828
PaeR7I	CTCGAG	2 cut(s)	428, 1061
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	1345
PcsI	WCGNNNNNNNCGW	1 cut(s)	834
PdmI	GAANNNNTTC	2 cut(s)	665, 843
PleI	GAGTC	3 cut(s)	190, 663, 1318
PpsI	GAGTC	3 cut(s)	190, 663, 1318
PscI	ACATGT	1 cut(s)	1345
Psp124BI	GAGCTC	2 cut(s)	94, 1062
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	878, 975
PspXI	VCTCGAGB	1 cut(s)	428
PsuI	RGATCY	6 cut(s)	250, 437, 634, 793, 859, 943
SacI	GAGCTC	2 cut(s)	94, 1062
SchI	GAGTC	3 cut(s)	190, 664, 1319
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	3 cut(s)	94, 1062, 1087
Sfr274I	CTCGAG	2 cut(s)	428, 1061
SfuI	TTCGAA	1 cut(s)	828
SlaI	CTCGAG	2 cut(s)	428, 1061
SmlI	CTYRAG	7 cut(s)	329, 428, 713, 756, 1061, 1129, 1295
SmoI	CTYRAG	7 cut(s)	329, 428, 713, 756, 1061, 1129, 1295
Sse9I	AATT	7 cut(s)	62, 474, 553, 737, 928, 1272, 1411
SsiI	CCGC	2 cut(s)	571, 584
SspMI	CTAG	3 cut(s)	260, 561, 1341
SstI	GAGCTC	2 cut(s)	94, 1062
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	318, 1045
TaiI	ACGT	2 cut(s)	353, 371
TaqI	TCGA	4 cut(s)	429, 828, 837, 1062
TasI	AATT	7 cut(s)	62, 474, 553, 737, 928, 1272, 1411
TscAI	CASTG	4 cut(s)	85, 604, 895, 1048
TseFI	GTSAC	2 cut(s)	230, 244
Tsp45I	GTSAC	2 cut(s)	230, 244
TspDTI	ATGAA	5 cut(s)	260, 288, 696, 1308, 1357
TspGWI	ACGGA	2 cut(s)	263, 872
TspRI	CASTG	4 cut(s)	85, 604, 895, 1048
Vha464I	CTTAAG	2 cut(s)	713, 1295
XagI	CCTNNNNNAGG	1 cut(s)	1298
XapI	RAATTY	1 cut(s)	1411
XceI	RCATGY	1 cut(s)	1349
XhoI	CTCGAG	2 cut(s)	428, 1061
XmaJI	CCTAGG	1 cut(s)	259
XmnI	GAANNNNTTC	2 cut(s)	665, 843
XspI	CTAG	3 cut(s)	260, 561, 1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.