Prupe.1G303600_v2.0.a1

Piriformospora indica-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012746
Physical Location & Seq
Reverse (-)
29767893 .. 29770421
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G303600.1

Sequence Viewer

Length: 1440 bp
ATGAAGGGTTACACAGCCATCAGTCTTGTCATTTTGGTTAGCTGTATGTTCTTTTGGGCTGGTTCGTGCTCTGAAGAAGAAGATGATGATTTGGCTCCAATGGAGGAAACAGAGCAAGAAGCTCTGTACTCTGCTATACAAGGCTTTGTGGGCAAACAGTGGAATGGCTCAGACCTCTATCCTGATCCTTGTGGGTGGACTCCTATACAGGGGGTGTCTTGTGATCTCTTTGATGGTCTTTGGTATGTGACCTCCTTAAATATTGGACCCATTCATGACAACTCGCTTAATTGTTCCACAAGTGCAAAATTTAGGCCACAACTGTTTGATTTGAAGCACCTAAAATCTTTGTCCCTTTTCAATTGCTTCCTCTTACCCCACAAACATCCAGTTCCAATCCCCACAGACAACTGGTGGAAACTTGCTAGTAGCTTAGAATCACTAGAGTTCCGATCGAATCCTGGTCTCATTGGACAAATTCCTAGTAGCTTTGGCAGCCTCAGAAAGCTCAAATCACTAGTACTAGTGGAGAATGGATTAGCAGGTGAATTACCAACAAATATTGGTGACTTAATCCAATTGAAGCGGCTAGTTCTTGCTGGAAACTGGTTTACAGGTCCAATTCCTAATGGTTTTGGTGAATTGAATCGGCTGTTGATCCTTGATTTAAGTCGGAACTCATTCTCTGGGCCTTTCCCAATGACTCTGGGAAGTTTGACTTCGCTCTTAAAGCTTGACTTGAGCAACAACCAATTGGAAGGGAAGCTGCCAGGAGAGCTTGCTAATCTAAAGCAACTGACCCTTTTGGACTTTAGGAACAACAATTTTTCAGGTGGGTTGAGCAAATCACTTCAAGAAATGCATTCCTTGGAAGAGATAGCCTTGTCCAACAACCCTATAGGTGGAGAGCTCAACAGCCTAGAGTGGCAAAACATACGGAACTTGGTCATTTTGGAGCTCTCTGGCACAGGCTTAACTGGTGAGATTCCAGAGTCAATATCAAAGTTAAAGAGATTGAGATTCTTGGGTCTAAGTGACAACAAGCTCACAGGCAACCTCTTACCAAAGCTTGCAACTTTGCCGTGTCTTAGTGCACTCTACCTACATGGCAACAACCTGACAGGGGTGATGAAATTTTCTGAGCGGTTTTATCATAAAATGGGGAGCCGTTTTGGTGCTTGGAACAACCCAAATCTCTGCTTTATGAGTGTATTGGTGCCATCAGGCCATGTACCATTTGGGGTAAAGCCATGCCAGCAAGACCAAGAGGTCACATTGCTTGAACCCAATTCAAAAACAAAGTTGGTGAATGGTAGTTTAAATCAGAATTCCCATTTCACCACTTCGTTGGGATTCTCAAGCAGTGGCATTGATGGGATTTGGTGGCTTAGTGGGCTTCTCCAGTTAATGATAGTTGTATTATTGACTTGTTTCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

480

Amino Acids

52.76

Weight (kDa)

5.77

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012746)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13230 AT3G25670
fragaria_vesca FvH4_4g28250
malus_domestica MD13G1048600.v1.1 MD16G1049900.v1.1
prunus_persica Prupe.1G303600_v2.0.a1
pyrus_communis pycom13g04290 pycom16g04360
rosa_chinensis RchiOBHm_Chr4g0436111
rosa_laevigata RLG00000006538
rosa_multiflora Rmu_sc0006301.1_g000003
rosa_roxburghii Rroxscaffold_5G00377220
rosa_rugosa Rorug04G0292100
rosa_samantha Rh4AG346100 Rh4BG355200 Rh4CG369800 Rh4DG348800
rosa_wichuraiana Rw4G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 533
AasI GACNNNNNNGTC 1 cut(s) 1268
Acc36I ACCTGC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 1216
AccBSI CCGCTC 1 cut(s) 1144
AciI CCGC 2 cut(s) 586, 1144
AclWI GGATC 2 cut(s) 179, 652
AcsI RAATTY 4 cut(s) 308, 477, 1133, 1327
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 3 cut(s) 128, 522, 1233
AfiI CCNNNNNNNGG 3 cut(s) 209, 902, 1123
AgsI TTSAA 7 cut(s) 334, 361, 583, 646, 854, 1283, 1293
AhlI ACTAGT 2 cut(s) 517, 523
AjnI CCWGG 2 cut(s) 460, 769
Alw21I GWGCWC 4 cut(s) 71, 912, 960, 1096
Alw26I GTCTC 1 cut(s) 470
Alw44I GTGCAC 1 cut(s) 1092
AlwI GGATC 2 cut(s) 179, 652
AoxI GGCC 3 cut(s) 314, 689, 1225
ApaLI GTGCAC 1 cut(s) 1092
ApeKI GCWGC 2 cut(s) 495, 766
ApoI RAATTY 4 cut(s) 308, 477, 1133, 1327
Asp700I GAANNNNTTC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 266, 617, 689
AsuHPI GGTGA 7 cut(s) 557, 578, 650, 992, 1138, 1318, 1330
AvaII GGWCC 2 cut(s) 266, 617
BaeGI GKGCMC 1 cut(s) 1096
BanI GGYRCC 1 cut(s) 1216
BanII GRGCYC 2 cut(s) 912, 960
Bbv12I GWGCWC 4 cut(s) 71, 912, 960, 1096
BbvI GCAGC 2 cut(s) 507, 753
BccI CCATC 4 cut(s) 26, 227, 1228, 1367
BceAI ACGGC 2 cut(s) 1066, 1152
BciT130I CCWGG 2 cut(s) 462, 771
BcoDI GTCTC 1 cut(s) 470
BcuI ACTAGT 2 cut(s) 517, 523
BfaI CTAG 7 cut(s) 426, 443, 483, 518, 524, 590, 920
BfmI CTRYAG 2 cut(s) 897, 1436
BfuAI ACCTGC 1 cut(s) 533
BisI GCNGC 3 cut(s) 496, 587, 767
BlsI GCNGC 3 cut(s) 497, 588, 768
BmcAI AGTACT 1 cut(s) 522
Bme1390I CCNGG 2 cut(s) 462, 771
Bme18I GGWCC 2 cut(s) 266, 617
BmgT120I GGNCC 3 cut(s) 266, 617, 689
BmiI GGNNCC 4 cut(s) 96, 268, 1166, 1218
BmrFI CCNGG 2 cut(s) 462, 771
BpmI CTGGAG 1 cut(s) 1385
BpuEI CTTGAG 2 cut(s) 760, 1342
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 867
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 902, 1123
Bse1I ACTGG 5 cut(s) 389, 416, 611, 982, 1402
Bse3DI GCAATG 1 cut(s) 1274
BseBI CCWGG 2 cut(s) 462, 771
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 209, 902, 1123
BseMI GCAATG 1 cut(s) 1274
BseMII CTCAG 3 cut(s) 183, 514, 1131
BseNI ACTGG 5 cut(s) 389, 416, 611, 982, 1402
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 2 cut(s) 507, 753
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 316, 691, 1227
BshNI GGYRCC 1 cut(s) 1216
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 4 cut(s) 71, 912, 960, 1096
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 209, 902, 1123
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 862
BsnI GGCC 3 cut(s) 316, 691, 1227
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 4 cut(s) 71, 912, 960, 1096
Bsp143I GATC 4 cut(s) 184, 223, 452, 657
BspACI CCGC 2 cut(s) 586, 1144
BspANI GGCC 3 cut(s) 316, 691, 1227
BspCNI CTCAG 3 cut(s) 182, 513, 1132
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 96, 268, 1166, 1218
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 2 cut(s) 179, 652
BspT107I GGYRCC 1 cut(s) 1216
BspTNI GGTCTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 1144
BsrDI GCAATG 1 cut(s) 1274
BsrI ACTGG 5 cut(s) 389, 416, 611, 982, 1402
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 4 cut(s) 184, 223, 452, 657
BssT1I CCWWGG 1 cut(s) 867
Bst2UI CCWGG 2 cut(s) 462, 771
Bst4CI ACNGT 2 cut(s) 159, 324
Bst6I CTCTTC 1 cut(s) 867
BstC8I GCNNGC 3 cut(s) 780, 1071, 1256
BstDEI CTNAG 7 cut(s) 169, 433, 500, 1031, 1088, 1140, 1388
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 4 cut(s) 187, 226, 455, 660
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 184, 223, 452, 657
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 6 cut(s) 150, 495, 730, 775, 1255, 1393
BstNI CCWGG 2 cut(s) 462, 771
BstSCI CCNGG 2 cut(s) 460, 769
BstSFI CTRYAG 2 cut(s) 897, 1436
BstSLI GKGCMC 1 cut(s) 1096
BstV1I GCAGC 2 cut(s) 507, 753
BstXI CCANNNNNNTGG 1 cut(s) 1348
BsuRI GGCC 3 cut(s) 316, 691, 1227
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 1369
BtsIMutI CAGTG 2 cut(s) 164, 1369
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 3 cut(s) 780, 1071, 1256
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 266, 617, 689
Csp6I GTAC 3 cut(s) 127, 521, 1232
CviAII CATG 4 cut(s) 275, 1106, 1229, 1251
CviQI GTAC 3 cut(s) 127, 521, 1232
DdeI CTNAG 7 cut(s) 169, 433, 500, 1031, 1088, 1140, 1388
DpnI GATC 4 cut(s) 186, 225, 454, 659
DpnII GATC 4 cut(s) 184, 223, 452, 657
DraI TTTAAA 1 cut(s) 1320
DrdI GACNNNNNNGTC 1 cut(s) 1268
DseDI GACNNNNNNGTC 1 cut(s) 1268
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
Ecl136II GAGCTC 2 cut(s) 910, 958
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 2 cut(s) 912, 960
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 266, 617
Eco53kI GAGCTC 2 cut(s) 910, 958
Eco57I CTGAAG 1 cut(s) 93
EcoICRI GAGCTC 2 cut(s) 910, 958
EcoRI GAATTC 1 cut(s) 1327
EcoRII CCWGG 2 cut(s) 460, 769
EcoT14I CCWWGG 1 cut(s) 867
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 2 cut(s) 912, 960
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 4 cut(s) 278, 1109, 1232, 1254
FalI AAGNNNNNCTT 4 cut(s) 703, 735, 722, 754
FaqI GGGAC 1 cut(s) 337
FatI CATG 4 cut(s) 274, 1105, 1228, 1250
Fnu4HI GCNGC 3 cut(s) 496, 587, 767
FokI GGATG 1 cut(s) 372
FriOI GRGCYC 2 cut(s) 912, 960
Fsp4HI GCNGC 3 cut(s) 496, 587, 767
FspBI CTAG 7 cut(s) 426, 443, 483, 518, 524, 590, 920
GluI GCNGC 3 cut(s) 496, 587, 767
GsuI CTGGAG 1 cut(s) 1385
HaeIII GGCC 3 cut(s) 316, 691, 1227
Hin1II CATG 4 cut(s) 278, 1109, 1232, 1254
HindIII AAGCTT 2 cut(s) 731, 1067
HinfI GANTC 9 cut(s) 199, 437, 457, 646, 703, 985, 992, 1020, 1353
HphI GGTGA 7 cut(s) 557, 578, 650, 992, 1138, 1318, 1330
Hpy166II GTNNAC 3 cut(s) 198, 612, 1094
Hpy188I TCNGA 7 cut(s) 73, 172, 452, 503, 675, 1141, 1326
Hpy188III TCNNGA 4 cut(s) 182, 275, 854, 989
Hpy8I GTNNAC 3 cut(s) 198, 612, 1094
HpyAV CCTTC 1 cut(s) 752
HpyCH4III ACNGT 2 cut(s) 159, 324
HpyCH4V TGCA 4 cut(s) 305, 862, 1073, 1094
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 495, 730, 775, 1255, 1393
HpyF3I CTNAG 7 cut(s) 169, 433, 500, 1031, 1088, 1140, 1388
Hsp92II CATG 4 cut(s) 278, 1109, 1232, 1254
Kzo9I GATC 4 cut(s) 184, 223, 452, 657
LmnI GCTCC 3 cut(s) 100, 955, 1164
Lsp1109I GCAGC 2 cut(s) 507, 753
MaeI CTAG 7 cut(s) 426, 443, 483, 518, 524, 590, 920
MaeIII GTNAC 5 cut(s) 8, 247, 566, 1034, 1270
MalI GATC 4 cut(s) 186, 225, 454, 659
MbiI CCGCTC 1 cut(s) 1144
MboI GATC 4 cut(s) 184, 223, 452, 657
MboII GAAGA 4 cut(s) 86, 89, 92, 884
MfeI CAATTG 3 cut(s) 361, 578, 752
MhlI GDGCHC 4 cut(s) 71, 912, 960, 1096
MlyI GAGTC 3 cut(s) 193, 697, 1001
MmeI TCCRAC 2 cut(s) 653, 912
MnlI CCTC 7 cut(s) 97, 185, 262, 380, 509, 1067, 1261
Mph1103I ATGCAT 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 9 cut(s) 257, 288, 572, 668, 728, 974, 1007, 1319, 1406
MspR9I CCNGG 2 cut(s) 462, 771
MunI CAATTG 3 cut(s) 361, 578, 752
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 2 cut(s) 462, 771
MwoI GCNNNNNNNGC 6 cut(s) 150, 495, 730, 775, 1255, 1393
NdeII GATC 4 cut(s) 184, 223, 452, 657
NlaIII CATG 4 cut(s) 278, 1109, 1232, 1254
NlaIV GGNNCC 4 cut(s) 96, 268, 1166, 1218
NmuCI GTSAC 4 cut(s) 247, 566, 1034, 1270
NsiI ATGCAT 1 cut(s) 864
PagI TCATGA 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 533
PctI GAATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 6 cut(s) 437, 457, 646, 985, 1020, 1353
PkrI GCNGC 3 cut(s) 497, 588, 768
Ple19I CGATCG 1 cut(s) 455
PleI GAGTC 3 cut(s) 193, 697, 1000
PpsI GAGTC 3 cut(s) 193, 697, 1000
Psp124BI GAGCTC 2 cut(s) 912, 960
Psp6I CCWGG 2 cut(s) 460, 769
PspGI CCWGG 2 cut(s) 460, 769
PspN4I GGNNCC 4 cut(s) 96, 268, 1166, 1218
PspPI GGNCC 3 cut(s) 266, 617, 689
PvuI CGATCG 1 cut(s) 455
RsaI GTAC 3 cut(s) 128, 522, 1233
RsaNI GTAC 3 cut(s) 127, 521, 1232
SacI GAGCTC 2 cut(s) 912, 960
SaqAI TTAA 9 cut(s) 257, 288, 572, 668, 728, 974, 1007, 1319, 1406
SatI GCNGC 3 cut(s) 496, 587, 767
Sau3AI GATC 4 cut(s) 184, 223, 452, 657
Sau96I GGNCC 3 cut(s) 266, 617, 689
ScaI AGTACT 1 cut(s) 522
SchI GAGTC 3 cut(s) 193, 697, 1001
ScrFI CCNGG 2 cut(s) 462, 771
SduI GDGCHC 4 cut(s) 71, 912, 960, 1096
SfcI CTRYAG 2 cut(s) 897, 1436
SinI GGWCC 2 cut(s) 266, 617
SmlI CTYRAG 2 cut(s) 739, 1357
SmoI CTYRAG 2 cut(s) 739, 1357
SpeI ACTAGT 2 cut(s) 517, 523
SsiI CCGC 2 cut(s) 586, 1144
SspI AATATT 2 cut(s) 262, 562
SspMI CTAG 7 cut(s) 426, 443, 483, 518, 524, 590, 920
SstI GAGCTC 2 cut(s) 912, 960
StyD4I CCNGG 2 cut(s) 460, 769
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 2 cut(s) 159, 324
TaqI TCGA 1 cut(s) 455
TatI WGTACW 2 cut(s) 126, 520
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 6 cut(s) 437, 457, 646, 985, 1020, 1353
Tru1I TTAA 9 cut(s) 257, 288, 572, 668, 728, 974, 1007, 1319, 1406
Tru9I TTAA 9 cut(s) 257, 288, 572, 668, 728, 974, 1007, 1319, 1406
TscAI CASTG 2 cut(s) 164, 1369
TseFI GTSAC 4 cut(s) 247, 566, 1034, 1270
TseI GCWGC 2 cut(s) 495, 766
Tsp45I GTSAC 4 cut(s) 247, 566, 1034, 1270
TspDTI ATGAA 3 cut(s) 17, 263, 1145
TspGWI ACGGA 1 cut(s) 952
TspRI CASTG 2 cut(s) 164, 1369
VneI GTGCAC 1 cut(s) 1092
VpaK11BI GGWCC 2 cut(s) 266, 617
XapI RAATTY 4 cut(s) 308, 477, 1133, 1327
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 7 cut(s) 426, 443, 483, 518, 524, 590, 920
ZrmI AGTACT 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.