Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012746

Physical Location & Seq

Genomic Coordinates Forward (+)

3504916 .. 3506854

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1049900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGAAGGGTTTTGCTCCTATCAGTCTTGTGATTTTGGTAATCTTTCAGTTCTCTGTGGGTGTTTGGAGTTATGAGGAAGCAGATGAAGGTGTAGCTCCGATGGAGAAAACTGAGCAGGAAGCTCTGTACTCTGCAGTACAAGGCTTTGTGGGTAAATGGTGGAATGGTTCAGACCTCTATCCGGATCCTTGTGGGTGGACTCCTATACAGGGGGTGTCTTGTGATTTGTATGATGGGGTTTGGTATGTGACCACCATGAATATTGGACCTATTCTTGACAACTCCCTAAATTGTTCCCCAAGTGCAAAATTTAGACCACAACTGTTTGATTTGAAGCACCTAAAATCCCTATCCATTTTCAATTGCTTCCTCTCACCCCACAAACATCCAGTTCCAATCCCCTCAGAGAACTGGTGGAACCTTGCTGGCAGCTTAGAATCACTAGAGTTTCGATCGAATCCGGGCCTCACTGGACAAATTCCTACAACCTTTGGCAGCCTTAGAAAGCTCCAATCATTATTGCTAGTAGAGAATGGATTAAGTGGTGGACTACCAACAAATATCGGTGAATTGGTCCGATTGAAACGGCTAGTTCTAGCCGGCAACTGGTTTACGGGCCAAATCCCTGAAGGGTTTGGTGGATTGAATCAGCTGTTAATCCTTGATTTAAGTAGGAACTCACTATCCGGGCCTTTGCCAATCACCATTGGAAGCTTGACTTCACTCTTGAAGCTTGACTTGAGCAGCAATCAACTGGAAGGGCAGCTACCATTGGGGTTTGGTAATCTAAAGATGTTGACTTTATTGGACCTCAGGAGCAACAATTTCTCAGGTGGGTTGACCAAATCACTTGAAGAAATGCATTCCTTGGAAGTGTTGGTCTTGTCCAAAAACCCAATTGGTGGAGACATCAAAACCCTAGAGTGGCAAAACATGGAGAAATTGGTAATTTTAGACCTCTCTGGATTAGGTCTAATTGGTGAGATTCCAGATTCAATTTCAAACCTAAAAAAATTGAGATTTTTGGGTCTGAGTGACAACAAGCTCACAGGCAACCTCTTGCCAAAGATTGCAACTTTGCCCTGCCTCAGTGCACTCTACCTCCATGGCAACAACCTCACAGGGGAGCTTAAATTCTCTGAGTCGTTTTATCACAAAATGGGGAGTCGTTTTGGGGCTTGGAACAACCCTAATCTCTGTTACGTCAGTGGAATGGTGCCAGCAGGCCATGTCCCATTCGGGGTGAGGCCATGTCAGCAGGGGGAGGAGGAGGTCACATTGGTTGAAAAACCCAATTCAAAAACAGAGTTGGGTGATGAGATTTTGAATCAGAATTCACATTACACTACTTCTTTGGGAATCTCAAGCTTTGGCATTGATGGGTTCTGGTGGCTTAGTGGATTTCTGCAATTACTGATGTTTCTGTTATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0016020 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

479

Amino Acids

52.46

Weight (kDa)

5.37

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	163 - 383	5.4e-16	Leucine-rich repeat region
LRR_8	PF13855	193 - 252	3.4e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13230 AT3G25670
fragaria_vesca	FvH4_4g28250
malus_domestica	MD13G1048600.v1.1 MD16G1049900.v1.1
prunus_persica	Prupe.1G303600_v2.0.a1
pyrus_communis	pycom13g04290 pycom16g04360
rosa_chinensis	RchiOBHm_Chr4g0436111
rosa_laevigata	RLG00000006538
rosa_multiflora	Rmu_sc0006301.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377220
rosa_rugosa	Rorug04G0292100
rosa_samantha	Rh4AG346100 Rh4BG355200 Rh4CG369800 Rh4DG348800
rosa_wichuraiana	Rw4G030250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1216
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccIII	TCCGGA	1 cut(s)	181
AclWI	GGATC	2 cut(s)	179, 192
AcsI	RAATTY	4 cut(s)	308, 477, 1133, 1333
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	2 cut(s)	128, 138
AfiI	CCNNNNNNNGG	7 cut(s)	181, 209, 606, 902, 924, 1123, 1240
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
Alw21I	GWGCWC	1 cut(s)	1096
Alw26I	GTCTC	1 cut(s)	900
Alw44I	GTGCAC	1 cut(s)	1092
AlwI	GGATC	2 cut(s)	179, 192
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	5 cut(s)	463, 616, 689, 1225, 1247
ApaLI	GTGCAC	1 cut(s)	1092
ApeKI	GCWGC	4 cut(s)	429, 495, 744, 763
ApoI	RAATTY	4 cut(s)	308, 477, 1133, 1333
AspS9I	GGNCC	6 cut(s)	266, 463, 574, 616, 689, 808
AsuC2I	CCSGG	2 cut(s)	462, 688
AsuHPI	GGTGA	6 cut(s)	366, 578, 694, 992, 1255, 1325
AvaII	GGWCC	3 cut(s)	266, 574, 808
AxyI	CCTNAGG	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	1096
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	1216
BarI	GAAGNNNNNNTAC	2 cut(s)	750, 782
Bbv12I	GWGCWC	1 cut(s)	1096
BbvI	GCAGC	4 cut(s)	441, 507, 756, 775
BccI	CCATC	3 cut(s)	94, 227, 1373
BceAI	ACGGC	1 cut(s)	602
BcnI	CCSGG	2 cut(s)	462, 688
BcoDI	GTCTC	1 cut(s)	900
BfaI	CTAG	5 cut(s)	443, 524, 590, 596, 920
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	4 cut(s)	430, 496, 745, 764
BlsI	GCNGC	4 cut(s)	431, 497, 746, 765
Bme1390I	CCNGG	2 cut(s)	462, 688
Bme18I	GGWCC	3 cut(s)	266, 574, 808
BmgT120I	GGNCC	6 cut(s)	266, 463, 574, 616, 689, 808
BmiI	GGNNCC	3 cut(s)	186, 419, 1218
BmrFI	CCNGG	2 cut(s)	462, 688
BpuEI	CTTGAG	2 cut(s)	760, 1348
BpuMI	CCSGG	2 cut(s)	462, 688
BsaJI	CCNNGG	2 cut(s)	867, 1105
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	1086, 1116
Bsc4I	CCNNNNNNNGG	7 cut(s)	181, 209, 606, 902, 924, 1123, 1240
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	5 cut(s)	389, 416, 475, 611, 759
Bse21I	CCTNAGG	1 cut(s)	812
BseAI	TCCGGA	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	867, 1105
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	7 cut(s)	181, 209, 606, 902, 924, 1123, 1240
BseMII	CTCAG	7 cut(s)	102, 417, 826, 843, 1022, 1102, 1131
BseNI	ACTGG	5 cut(s)	389, 416, 475, 611, 759
BseRI	GAGGAG	2 cut(s)	1280, 1283
BseSI	GKGCMC	1 cut(s)	1096
BseXI	GCAGC	4 cut(s)	441, 507, 756, 775
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	5 cut(s)	465, 618, 691, 1227, 1249
BshNI	GGYRCC	1 cut(s)	1216
BsiEI	CGRYCG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	1096
BsiSI	CCGG	4 cut(s)	182, 461, 600, 687
BslFI	GGGAC	1 cut(s)	1217
BslI	CCNNNNNNNGG	7 cut(s)	181, 209, 606, 902, 924, 1123, 1240
BsmAI	GTCTC	1 cut(s)	900
BsmFI	GGGAC	1 cut(s)	1217
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	5 cut(s)	465, 618, 691, 1227, 1249
Bsp1286I	GDGCHC	1 cut(s)	1096
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	184, 452
Bsp19I	CCATGG	1 cut(s)	1105
BspANI	GGCC	5 cut(s)	465, 618, 691, 1227, 1249
BspCNI	CTCAG	7 cut(s)	103, 416, 825, 842, 1023, 1101, 1132
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	186, 419, 1218
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	2 cut(s)	179, 192
BspT107I	GGYRCC	1 cut(s)	1216
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	5 cut(s)	389, 416, 475, 611, 759
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	867, 1105
BssMI	GATC	2 cut(s)	184, 452
BssT1I	CCWWGG	2 cut(s)	867, 1105
Bst4CI	ACNGT	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	427, 601, 1221, 1225
BstDSI	CCRYGG	1 cut(s)	1105
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	2 cut(s)	187, 455
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	2 cut(s)	184, 452
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	1 cut(s)	1255
BstSCI	CCNGG	2 cut(s)	460, 686
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	1096
BstV1I	GCAGC	4 cut(s)	441, 507, 756, 775
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	812
BsuRI	GGCC	5 cut(s)	465, 618, 691, 1227, 1249
BtgI	CCRYGG	1 cut(s)	1105
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	3 cut(s)	468, 1096, 1213
Cac8I	GCNNGC	4 cut(s)	427, 601, 1221, 1225
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	6 cut(s)	266, 463, 574, 616, 689, 808
Csp6I	GTAC	2 cut(s)	127, 137
CviAII	CATG	5 cut(s)	256, 934, 1106, 1229, 1251
CviQI	GTAC	2 cut(s)	127, 137
DpnI	GATC	2 cut(s)	186, 454
DpnII	GATC	2 cut(s)	184, 452
Eco130I	CCWWGG	2 cut(s)	867, 1105
Eco47I	GGWCC	3 cut(s)	266, 574, 808
Eco57I	CTGAAG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	1333
EcoT14I	CCWWGG	2 cut(s)	867, 1105
EcoT22I	ATGCAT	1 cut(s)	864
ErhI	CCWWGG	2 cut(s)	867, 1105
FaeI	CATG	5 cut(s)	259, 937, 1109, 1232, 1254
FaiI	YATR	9 cut(s)	72, 206, 231, 246, 257, 935, 1107, 1230, 1252
FalI	AAGNNNNNCTT	4 cut(s)	703, 735, 722, 754
FaqI	GGGAC	1 cut(s)	1217
FatI	CATG	5 cut(s)	255, 933, 1105, 1228, 1250
Fnu4HI	GCNGC	4 cut(s)	430, 496, 745, 764
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	4 cut(s)	430, 496, 745, 764
FspBI	CTAG	5 cut(s)	443, 524, 590, 596, 920
GluI	GCNGC	4 cut(s)	430, 496, 745, 764
HaeIII	GGCC	5 cut(s)	465, 618, 691, 1227, 1249
HapII	CCGG	4 cut(s)	182, 461, 600, 687
Hin1II	CATG	5 cut(s)	259, 937, 1109, 1232, 1254
HincII	GTYRAC	2 cut(s)	798, 840
HindII	GTYRAC	2 cut(s)	798, 840
HindIII	AAGCTT	3 cut(s)	712, 731, 1366
HpaII	CCGG	4 cut(s)	182, 461, 600, 687
HphI	GGTGA	6 cut(s)	366, 578, 694, 992, 1255, 1325
Hpy166II	GTNNAC	6 cut(s)	198, 548, 612, 798, 840, 1094
Hpy188I	TCNGA	7 cut(s)	99, 172, 406, 578, 1032, 1141, 1332
Hpy188III	TCNNGA	6 cut(s)	182, 275, 727, 814, 963, 989
Hpy8I	GTNNAC	6 cut(s)	198, 548, 612, 798, 840, 1094
HpyAV	CCTTC	3 cut(s)	80, 623, 752
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	1203
HpyCH4V	TGCA	6 cut(s)	134, 305, 862, 1073, 1094, 1408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1255
HpySE526I	ACGT	1 cut(s)	1203
Hsp92II	CATG	5 cut(s)	259, 937, 1109, 1232, 1254
Kpn2I	TCCGGA	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	184, 452
LmnI	GCTCC	5 cut(s)	19, 100, 513, 816, 1126
Lsp1109I	GCAGC	4 cut(s)	441, 507, 756, 775
MaeI	CTAG	5 cut(s)	443, 524, 590, 596, 920
MaeII	ACGT	1 cut(s)	1203
MaeIII	GTNAC	4 cut(s)	247, 1034, 1199, 1273
MalI	GATC	2 cut(s)	186, 454
MboI	GATC	2 cut(s)	184, 452
MboII	GAAGA	1 cut(s)	866
MfeI	CAATTG	2 cut(s)	361, 897
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	1096
MlyI	GAGTC	3 cut(s)	193, 1151, 1174
Mph1103I	ATGCAT	1 cut(s)	864
MroI	TCCGGA	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	599
MseI	TTAA	4 cut(s)	539, 656, 668, 1131
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	4 cut(s)	182, 461, 600, 687
MspR9I	CCNGG	2 cut(s)	462, 688
MunI	CAATTG	2 cut(s)	361, 897
Mva1269I	GAATGC	1 cut(s)	862
MwoI	GCNNNNNNNGC	1 cut(s)	1255
NaeI	GCCGGC	1 cut(s)	601
NciI	CCSGG	2 cut(s)	462, 688
NcoI	CCATGG	1 cut(s)	1105
NdeII	GATC	2 cut(s)	184, 452
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	5 cut(s)	259, 937, 1109, 1232, 1254
NlaIV	GGNNCC	3 cut(s)	186, 419, 1218
NmuCI	GTSAC	3 cut(s)	247, 1034, 1273
NsiI	ATGCAT	1 cut(s)	864
PctI	GAATGC	1 cut(s)	862
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	7 cut(s)	437, 457, 646, 985, 992, 1327, 1359
PflMI	CCANNNNNTGG	1 cut(s)	902
PkrI	GCNGC	4 cut(s)	431, 497, 746, 765
Ple19I	CGATCG	1 cut(s)	455
PleI	GAGTC	3 cut(s)	193, 1150, 1173
PpsI	GAGTC	3 cut(s)	193, 1150, 1173
PspN4I	GGNNCC	3 cut(s)	186, 419, 1218
PspPI	GGNCC	6 cut(s)	266, 463, 574, 616, 689, 808
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	652
RsaI	GTAC	2 cut(s)	128, 138
RsaNI	GTAC	2 cut(s)	127, 137
SaqAI	TTAA	4 cut(s)	539, 656, 668, 1131
SatI	GCNGC	4 cut(s)	430, 496, 745, 764
Sau3AI	GATC	2 cut(s)	184, 452
Sau96I	GGNCC	6 cut(s)	266, 463, 574, 616, 689, 808
SchI	GAGTC	3 cut(s)	193, 1151, 1174
ScrFI	CCNGG	2 cut(s)	462, 688
SduI	GDGCHC	1 cut(s)	1096
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	3 cut(s)	266, 574, 808
SmlI	CTYRAG	2 cut(s)	739, 1363
SmoI	CTYRAG	2 cut(s)	739, 1363
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	5 cut(s)	443, 524, 590, 596, 920
StyD4I	CCNGG	2 cut(s)	460, 686
StyI	CCWWGG	2 cut(s)	867, 1105
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	1206
TaqI	TCGA	2 cut(s)	451, 455
TatI	WGTACW	2 cut(s)	126, 136
TfiI	GAWTC	7 cut(s)	437, 457, 646, 985, 992, 1327, 1359
Tru1I	TTAA	4 cut(s)	539, 656, 668, 1131
Tru9I	TTAA	4 cut(s)	539, 656, 668, 1131
TscAI	CASTG	3 cut(s)	475, 1096, 1213
TseFI	GTSAC	3 cut(s)	247, 1034, 1273
TseI	GCWGC	4 cut(s)	429, 495, 744, 763
Tsp45I	GTSAC	3 cut(s)	247, 1034, 1273
TspDTI	ATGAA	3 cut(s)	17, 99, 272
TspRI	CASTG	3 cut(s)	475, 1096, 1213
Van91I	CCANNNNNTGG	1 cut(s)	902
VneI	GTGCAC	1 cut(s)	1092
VpaK11BI	GGWCC	3 cut(s)	266, 574, 808
XapI	RAATTY	4 cut(s)	308, 477, 1133, 1333
XspI	CTAG	5 cut(s)	443, 524, 590, 596, 920
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.